Tfer041242.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999967.1:111029605-111034351[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 7.7 8.9e+02 2.0 0.4 2 20 437 455 436 457 0.91 2 17 0.0028 0.32 12.9 1.5 2 19 503 520 502 522 0.95 3 17 3.4 3.9e+02 3.2 0.6 2 23 564 586 563 586 0.93 4 17 0.61 70 5.5 0.4 5 23 596 614 593 614 0.92 5 17 0.00011 0.013 17.3 1.6 1 23 621 644 621 644 0.96 6 17 0.0023 0.27 13.1 4.6 2 21 652 671 651 673 0.94 7 17 0.74 85 5.2 0.0 1 20 682 701 682 703 0.93 8 17 0.16 18 7.3 1.1 1 20 723 742 723 743 0.96 9 17 0.062 7.1 8.6 5.2 1 23 752 774 752 774 0.94 10 17 0.43 50 6.0 0.1 1 23 790 815 790 815 0.97 11 17 0.085 9.8 8.2 0.3 2 23 828 850 827 850 0.94 12 17 0.0019 0.22 13.4 5.5 2 23 856 878 855 878 0.91 13 17 0.001 0.12 14.2 3.3 2 23 882 904 881 904 0.95 14 17 0.39 45 6.1 4.9 1 23 910 933 910 933 0.94 15 17 0.00032 0.037 15.8 0.4 1 23 938 960 938 960 0.98 16 17 0.00056 0.065 15.1 3.3 1 23 966 988 966 988 0.98 17 17 0.43 50 6.0 0.7 5 23 1004 1023 994 1023 0.85
Sequence Information
- Coding Sequence
- ATGGCGGTTAATGTTTCCACAATCGGCAGTGTCTGtttatattgtaaaacaaaCTCTGAAGTAGATGCTGGGAAAGATTTTCACGAAATTTACGATGAAGTAGGCCTCGAGCTGCAGTTACCCAACTTAgtggaaacattttttcatattaaagtgAAAAATGATGGGGCCAAACAACTCTGCGATGATTGTGTTAATCATCTTATAGAGTTGTATGATTTGGAAGAGCATaccaaagaaaaatgtaaagcatctgatgtggaaagagtggaaaaaacaaataataaaataactgaAGAGCAGCATACAAGTCATGAAACTAATTTACAAAGGACTACTGCCATTGAAGATAGAAACTTAACAGAAGCTGATCCTCTAACCCCCATCAATAGCAACCAAAAATATGGTACAAGGAAAGTAGATGATCTCAAATATGGAAATGtggaaaacttaattgataacGAAGAGCCGTTACCGTTCGCTCTCGCACATATTCAGGATGATAATAGTGCCACTGGAAATTTTTTGGAGGAGGAGTTCATAATTTTACACGAAAATGAAGACTCGCAAAATTTCAACGAAATAACTCCAAACAACATAATAGAAGTTATAGACCTGTGCGAGTCTGGGTGTAATGACCACATCGAATTTCTTGAAGATGAGGGAAACCAGCCTTTGGAAATAGAAGACGTAGATATAGATAACACAAACACTTCAAATAGCActgaaaaattagaaattataaGGGAATGTGAAATGAAAAGTAGTGAGAACGAAGCAGAAAATGAAGCTACGGAACTTGATTCAAATTATAGTAACCAAAATGATTACATAAATGATATTGTATATAAAGAAGAATTAGATGAAGCAGAGGCAGCTGATAAAGATAATTTACAAATTGGAAATGGTCAGGAAATTGATAAGGAAGACATTTATACTGATACAACTGAAGATATATATTATGAGGAAGACTCACCAATGAATGATGAAAAATATTGCTTAAATGATGAAATAACGATTaatgtggaaaataaaaataaaaattcttcagtAGAAGAATCTCAAAATATTAAAGAGACGACTACAACAACATCCAGCAAGTGTCAAGAGACGGAGGGTCAATTTTGTAAAGCAGAAATCAATGATGATGAAAAAGATGAAGTTTCAAATGATGATTTTTCGTTAGAAGAGGAGTATTTAATAGaagaaataagttGCCATCAACAATATGATGATATTGATTTGAATGAGTATTTGAGCAAGGTGTTGATaacaaaatttcaagacttgCAAATGATCTGGGAGACGGAATGcaaaTTATGTCTTGCCGACTATAATGACTTTGATGAACTATTAAGGCATTCGTGTATCACCGAGTTCAAAGAGGAACAGCAATTCTATTGTATAATGCCAAATTGTGATGAAAGTATGCATGATTTACCATCATTTGCCAGACATTTGATACTAAAGCATTATAATAAATTGGAAAGtgtggCAATTTACGGAAAATGTCCAGATTGCCagaaaacattttcaaatataatagattttaataaacattCTTGCTGTCGCACTATAAAACGAAAACCTGGATCTCCCAATTATTGCCAATACTGCGATATGGATTTTCAATCTTTAAAGAGatACGTTTTCCATATGCAATTTCATTTGACAAATCGGCGCCCTAAAGTGTGCTTATTGTGTGgtgatttatttaataattccaATGATTTCTTTGAACACACTCAATATCAACATATGACTGAAGGTTCTATGGCCTGCATAAAatGCGATCGTTTCTTTAAAGACAGGGAAGTTTTTGATAGTCATATGGATTTGCATGAGGATTCAAAGTATCAATATAGTTGTAGCTTTTGCcctaaaaaatacacaaataaattcgGCTTAAATCAACACATGGATATTTATCACAACAACAAATCTAATATTTCTCGATGTAAAGATTGTAATAAGGAGTTTGTCACTAAAACATCTTATCGCAATCATATAAAATGTCATGCAACTGATGTTCAAGTGGAATCTTTTGTATGTTCAACATGTGGTATTATAAGTAATGATTTGGAATTTATGAAgAATCACATTGAACAAGATGAAGATTCTTCTTGCTTTTCATCTTCAATAGAAGAGAAAACTTTGGGTGTGAGCTATACATGTGAAAACTGTTCTCTCGACTTTCATACAGTTAAGGATCTTAAAAGTCACCGTTTATGTGAAAGTCATAAAGATGATTTATTCCATTGTGGTATATGCCGACAAAGCTTCAAAACGCTGCGTCACATGCGAAACCATTCAATTAATCACAAGGATTTCAAAGAGCGCCAGAAAGCATTTCCCATAACACGTTTTTATGTCTGCAATATAGGGGATTGTGAAGAGTTCTATCCAATATGGACCTCATTGTATTATCATAAAAAACGTCCACATAAAACTGCAGAAACTTCGGCAACTCCCAACAAGCTAAAATGTCAATTTTGTCAACAACTGTTCATTTCGAAAATGTCCTTGGCCGTGCACGTGGCGAGAAGTCATAATAATTcAAACGTTAAATGTTCCCACTGTaaacgaaattttaaatctcaACAGCATTTGCAAGATCATATTGATTTCTTTCACACACCCATAGAATGTGACTTGTgctataaaaagtttaaacatcGTCGCAATTTACAGTCGCACAATAAAATGGTGCATCTAAATATTAAGCGCTATTTTTGTAGCCACTGCGACAAAGGATATTTTCATAAAAGCGAAAGGGATATACATGAgaaaaaaGTCCATCCCGACATTTCTTATAAATGTGAAGTGTGCAACTTTACAACTAATTATCCGGAATCTTTGGAAATTCATATGGACAAGCACAACAATCGGTTGAAATATCGGTGCTCAGTTTGCGGTAAAGCGTTCGGCagaaaacaacttttaaaatgtCACTTAAAAAGACATCTCAATCAAAAAGActATTCCTGTGCCGACTATTTGAATGAAAGCGGTTGTAATGGAACTTTTTTGACTAGCCATCTATTGAAAAGGCATATTCAAAGTAAACATCCAAACTCGAGTTTTAACATTAACATGCAAAGAGAAAAACaagataaaaaatcatttaataaataTGCGGAATCTGatcaaatagaaaatatttcttatgaaaTATTAGACGATGACGACCAGAGCAGCAGTAGTACGAGCGAAAAGAATTCTAAATCCTCCGAGTTAATGCAATTTAATGATACAGAATTTGAGGGAGACTCCATTGTATTGGTTTTGGATAATGAAATGGAAATTGATGAATAG
- Protein Sequence
- MAVNVSTIGSVCLYCKTNSEVDAGKDFHEIYDEVGLELQLPNLVETFFHIKVKNDGAKQLCDDCVNHLIELYDLEEHTKEKCKASDVERVEKTNNKITEEQHTSHETNLQRTTAIEDRNLTEADPLTPINSNQKYGTRKVDDLKYGNVENLIDNEEPLPFALAHIQDDNSATGNFLEEEFIILHENEDSQNFNEITPNNIIEVIDLCESGCNDHIEFLEDEGNQPLEIEDVDIDNTNTSNSTEKLEIIRECEMKSSENEAENEATELDSNYSNQNDYINDIVYKEELDEAEAADKDNLQIGNGQEIDKEDIYTDTTEDIYYEEDSPMNDEKYCLNDEITINVENKNKNSSVEESQNIKETTTTTSSKCQETEGQFCKAEINDDEKDEVSNDDFSLEEEYLIEEISCHQQYDDIDLNEYLSKVLITKFQDLQMIWETECKLCLADYNDFDELLRHSCITEFKEEQQFYCIMPNCDESMHDLPSFARHLILKHYNKLESVAIYGKCPDCQKTFSNIIDFNKHSCCRTIKRKPGSPNYCQYCDMDFQSLKRYVFHMQFHLTNRRPKVCLLCGDLFNNSNDFFEHTQYQHMTEGSMACIKCDRFFKDREVFDSHMDLHEDSKYQYSCSFCPKKYTNKFGLNQHMDIYHNNKSNISRCKDCNKEFVTKTSYRNHIKCHATDVQVESFVCSTCGIISNDLEFMKNHIEQDEDSSCFSSSIEEKTLGVSYTCENCSLDFHTVKDLKSHRLCESHKDDLFHCGICRQSFKTLRHMRNHSINHKDFKERQKAFPITRFYVCNIGDCEEFYPIWTSLYYHKKRPHKTAETSATPNKLKCQFCQQLFISKMSLAVHVARSHNNSNVKCSHCKRNFKSQQHLQDHIDFFHTPIECDLCYKKFKHRRNLQSHNKMVHLNIKRYFCSHCDKGYFHKSERDIHEKKVHPDISYKCEVCNFTTNYPESLEIHMDKHNNRLKYRCSVCGKAFGRKQLLKCHLKRHLNQKDYSCADYLNESGCNGTFLTSHLLKRHIQSKHPNSSFNINMQREKQDKKSFNKYAESDQIENISYEILDDDDQSSSSTSEKNSKSSELMQFNDTEFEGDSIVLVLDNEMEIDE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399832;
- 90% Identity
- -
- 80% Identity
- -