Tfer034463.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina fera
Gene Symbol
-
Assembly
GCA_905220375.1
Location
LR999966.1:121669091-121676022[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.055 6.3 8.8 2.3 1 23 223 246 223 246 0.97
2 20 0.17 20 7.2 2.9 2 23 306 327 305 327 0.96
3 20 0.0042 0.49 12.3 0.5 1 23 404 427 404 427 0.96
4 20 0.039 4.5 9.3 2.6 2 23 435 456 434 456 0.97
5 20 0.03 3.5 9.6 0.3 2 20 516 534 515 537 0.93
6 20 0.0058 0.67 11.9 1.2 1 23 610 633 610 633 0.92
7 20 0.0048 0.55 12.1 0.3 1 22 640 661 640 661 0.96
8 20 0.0036 0.41 12.5 3.0 2 23 735 756 734 756 0.94
9 20 0.28 32 6.6 0.1 2 19 783 800 782 803 0.89
10 20 0.0026 0.29 13.0 5.4 1 23 854 877 854 877 0.96
11 20 0.11 13 7.8 3.2 1 23 914 937 914 937 0.93
12 20 4.8 5.5e+02 2.7 1.4 2 23 992 1012 990 1012 0.88
13 20 0.00015 0.017 16.9 1.1 1 23 1018 1040 1018 1040 0.97
14 20 3.6e-05 0.0041 18.8 2.6 1 23 1046 1068 1046 1068 0.98
15 20 1.9e-05 0.0022 19.7 2.1 1 23 1074 1096 1074 1096 0.98
16 20 0.0027 0.31 12.9 0.1 3 23 1122 1142 1121 1142 0.99
17 20 1.1e-05 0.0013 20.4 2.2 1 23 1148 1170 1148 1170 0.99
18 20 1.1e-06 0.00013 23.6 0.4 1 23 1176 1198 1176 1198 0.99
19 20 0.00038 0.044 15.6 1.4 1 23 1204 1226 1204 1226 0.96
20 20 0.075 8.6 8.4 1.8 1 21 1232 1252 1232 1256 0.90

Sequence Information

Coding Sequence
ATGAGGAATGATTGTTTTATTAATGGAGTGCTGTATAAGTGTCGCACTTGCTTTGATCCAGGAGCAACAGTATATGCTCTTGCAGAGGAGTGCAGCAGCTCCAAAACTTGGGGAGATTTATTGAATGATGTTGTTAAATTAAAGACAAACGACGAGTTACTTCCAAAGACCATTTGTTCGAAATGTTTGGAGCAACTTATCAGTTACTACGATTTTATACTTCATGTTCAAAATGTGAATGAAAAGTACCACCAGCTTTTAGCAAGTGGTAAACATTATCCACAAAATGATAGTATTTCCAGCAGCTCTAATAATACAGCAGAGTTCTTTGAAGTGTCTACCAGTGCTTTGCGTTTGGGTCAGTGTGTTCCGGAAATTAAGTTGGAAGATGAGCTGCTTATTCCTTACGACATTGTTTTGAATAAGGACAATAGAAGAAACGATTCAGTAAAAGAAGATACTTGTGACCCTTTTATGGAAACCTTGGAAGAGGATATTGGGCACGCTTTAGATACGTTGAAATACGAACAAAGatcccCAAATGAAGAAAATCGAGTTCTTGAAGATGATATTAACGATTATAATTCCGATAACAGtcAACCATTCGGAAAGAAAACTGAACAACAATTCTGCAAATACTTTCCAATCGAAAAAGTCAACAATAATTTCGTGTGTGGGATATGCAAGAAATCATATACTTTAGATAGAAATTGTCGCAGGCATATAATCACGATGCACTACCAAGGTAAATTGTACAAATGTGCATTTTGCGATCAACATGCCCAATGTAAAAAGTACTTAACTCGCCATCTTAAACGTACACATCCAGACGAATCATTTGAATCTAATGCCAAACAATTAGCTCGTATGTTTGGGGAGCGTCTGTATAGCAAACCTCTTCTATTACCACGAATAGAATGTAAACTGTGTTGTACTACTtttgtaactaaaaaaaaacttcttcagCATCTAGAGAGCCATAGTGAGATTAATACTCTAGACAGTTTACAATTAAGCAGTGATATTATTCAGCGTTGGTTTCCAAATAAGAGAAAATtgcaatttataaaaacaatgatatGTAAGGACATTCGAGACAAAAACTGGATCAaatattatacaattttaaatgatttttcctatGAAATATCCATTAGTGATACGGATGCAGAAGATTTGAAAGAAGAAACAGAAGCACCTGCCAACAAATATATGTGCGAATTGTGTGCAAAAGATTTTTCGTACAAATATCAAGTGTTTGCTCATTTGAAAGAGGATCACTTGAACGAAGACATTCCTTTAAAATGCAGCCATTGCAATCTGGAatttatatcaataaaaatgtatgaacaacacaaacaaacacactgTCTGAATGAACATAAACTATTGCTTTGCCCCAATTGCAATGGCAAGTTTGTCTGgctcgaaaatataaaaaaccacaATTGCGTTACGAAATCATTGGATATTGTAAAACCTAGAGAAGTTAAAATAGGCAAGAGTTACAATGATGAAAAGCGTTCATCGCCAAAAACTATCATAAGATGTGCTCTTTGTGACATGACCTTTCAAAAATTGCGCGATTTACGACAACATATGCCTTTGCACGCCGATGGCAAAGCTGGAGTTGACTTTAATGGTTGCATTTATGTAAATCAATTTGAAAATGTATCCACCAATTGCGAACTGTTGGAACAAAAGATTAAAAATGCCTTCACGAAACGTCAAATAAGTCAACTGTATCAAGCTATTGATAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATAACgatgaaaatgatgatgatgatgaaaaaagCTATTTGTGCGAACTGTGCTATGAAACGTTTAAAAAGCGAAAACTGCTGCTTAAACATCAAATTGAACAACACAAGGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAGTATGTTAGTATTGATTTGTTAGAACAACATATGAAAAGAGAATGTTGGAATGAGCATCGACGAGTGGCTGAACAATGCGATTGTTGTAAAGAGCGTTTTATATGGCCGGATAGCATTCTGAGACATAGAGAAATACAGcgatacataaatattgaaaatttgcaAACGGATAACGTGTGTCGTACCCAGGCACAGAAAACAATAATAGCTTCATCAATCTCCAACTCTGATGTAACAAGTACCAATATCCaactttgttattgttttttatgtCCTAAAACTTTTGCCAATAATGATCAGTTCAACGATCATTTCATACGTCATCGTTTCGGACTATCCACCATCAAAACTGTTGCCAGCACAATACATTCTGTATGGTGGCCAAACGGGAGAAAgataataaaatgcaaaatatgtgatcaagtatttttaaatatggccgaattaaatgaacatttttcttctaaaaattccaaaaacttgTGTGGTGGAAGACAACATTCAGTGGCAAATTACTCTATTACTAATCAAATGGGGTTTGAGTTACATTTAGAGCTGGACTCGGAAACGGAAACTGAAAGCACTGACAATGAAGAAAATGAACAGACATTGCCATATAAATGTTGCATATGTAGTAAATCATTTAAgcgaaaatttgaaataattcaacATCAAACATCGAAACATAATTATAAATTCGTGGAACTCAAATGCGAACGTTGCTTTTTTAGAACTGTTTCACAGAAAGTTTTAGATTATCATAAAGTAAGCCAGTGTTTTAATGTTGAGAAATTATACCAATGCCATCAGTgtaatttcaaatttatgtgGCAAGAGAACCTTGAAAAGCATAATTCGATATTTCATACTTCGGACGTTTTCGTCAAAGCATTGCATGCGAGTAACACAGCGAGTAATACTAATGCTCAATTGATTGAATCAAAAGAAGCTTCCCAGATTAATTTGTCGTCAGCATTACATCAAGAGGAATCAGATAGAAGGGACTGCATTCAATTTGAAGATAAATGTAAATGTCTCATTTGTGGAATTTACATTGCCAAAAGTAATTATTCAGAACATATTAAGAGACACGAATGTGACAAATGTTTCAAATGTGATTTTTGCGAAATGACCTTTATAACAAATACCTCATTGAAGAAACATGTAGTCATGCATACGGGAGAACGAACTTTCTCATGTACATTATGCTCGAAATCGTTCAAGCGGCAAAAAGGTCTAAATATCCATAAACGTTTACACACCGAAAATCGACCATACAAATGCACAATTTGTTCGAAATCATTTCAGAAATCGGCACATCTGGCTGCTCATGTGCGATACCATTCGAGTAAAAAGCTGACGCCAGACAAGAAGTCGGACTCAACCCAACATGGACAAGTGGAGAGAAAGACAAACTTATGTCCTATTTGTGGTGTCTATTTGTCATACAAAACAAGTCTTTCAATACATATTAGAAGTCATACGGGTGAGAAGCCATTCAAGTGCGATCTTTGTGATAAAAGCTTTAAAGTATTAACCTATTTAAATCTGCATCGACGCACGCACTTTACTGAACGTCCATTTAAATGTACAATTTGCGAGAAATCGTTTGTCAGTGCTGTCAGATTAAAAGCACACATGCGCATTCACACTGGCGAGCGTCCATATCAGTGCACAGTTtgtcagaaaaaatttatgaattcagGCACTTTGAAGGAGCATTCGCTTAATCATACTGGTAATAAACCCTTTGTATGTGAGATTTGCAATCTAGCCTTTAAATGTTCGTGGTATCTCAAAAAGCATCGTGTCAAAAGTGGCCATCATATAGAAAataattga
Protein Sequence
MRNDCFINGVLYKCRTCFDPGATVYALAEECSSSKTWGDLLNDVVKLKTNDELLPKTICSKCLEQLISYYDFILHVQNVNEKYHQLLASGKHYPQNDSISSSSNNTAEFFEVSTSALRLGQCVPEIKLEDELLIPYDIVLNKDNRRNDSVKEDTCDPFMETLEEDIGHALDTLKYEQRSPNEENRVLEDDINDYNSDNSQPFGKKTEQQFCKYFPIEKVNNNFVCGICKKSYTLDRNCRRHIITMHYQGKLYKCAFCDQHAQCKKYLTRHLKRTHPDESFESNAKQLARMFGERLYSKPLLLPRIECKLCCTTFVTKKKLLQHLESHSEINTLDSLQLSSDIIQRWFPNKRKLQFIKTMICKDIRDKNWIKYYTILNDFSYEISISDTDAEDLKEETEAPANKYMCELCAKDFSYKYQVFAHLKEDHLNEDIPLKCSHCNLEFISIKMYEQHKQTHCLNEHKLLLCPNCNGKFVWLENIKNHNCVTKSLDIVKPREVKIGKSYNDEKRSSPKTIIRCALCDMTFQKLRDLRQHMPLHADGKAGVDFNGCIYVNQFENVSTNCELLEQKIKNAFTKRQISQLYQAIDKDGKEMDISDSDNDENDDDDEKSYLCELCYETFKKRKLLLKHQIEQHKDVSMPFTCKECKMQYVSIDLLEQHMKRECWNEHRRVAEQCDCCKERFIWPDSILRHREIQRYINIENLQTDNVCRTQAQKTIIASSISNSDVTSTNIQLCYCFLCPKTFANNDQFNDHFIRHRFGLSTIKTVASTIHSVWWPNGRKIIKCKICDQVFLNMAELNEHFSSKNSKNLCGGRQHSVANYSITNQMGFELHLELDSETETESTDNEENEQTLPYKCCICSKSFKRKFEIIQHQTSKHNYKFVELKCERCFFRTVSQKVLDYHKVSQCFNVEKLYQCHQCNFKFMWQENLEKHNSIFHTSDVFVKALHASNTASNTNAQLIESKEASQINLSSALHQEESDRRDCIQFEDKCKCLICGIYIAKSNYSEHIKRHECDKCFKCDFCEMTFITNTSLKKHVVMHTGERTFSCTLCSKSFKRQKGLNIHKRLHTENRPYKCTICSKSFQKSAHLAAHVRYHSSKKLTPDKKSDSTQHGQVERKTNLCPICGVYLSYKTSLSIHIRSHTGEKPFKCDLCDKSFKVLTYLNLHRRTHFTERPFKCTICEKSFVSAVRLKAHMRIHTGERPYQCTVCQKKFMNSGTLKEHSLNHTGNKPFVCEICNLAFKCSWYLKKHRVKSGHHIENN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01397741;
90% Identity
-
80% Identity
-