Tfer034460.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina fera
Gene Symbol
-
Assembly
GCA_905220375.1
Location
LR999966.1:121625378-121644054[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.5 2.9e+02 3.6 4.1 1 23 240 263 240 264 0.87
2 20 7.6 8.8e+02 2.1 2.9 2 23 323 344 322 344 0.95
3 20 0.0038 0.43 12.5 0.7 1 23 421 444 421 444 0.97
4 20 0.089 10 8.1 2.6 2 23 452 473 451 473 0.97
5 20 0.0093 1.1 11.2 0.2 2 20 549 567 548 570 0.94
6 20 0.006 0.69 11.8 1.7 1 23 643 666 643 666 0.92
7 20 0.0049 0.57 12.1 0.3 1 22 673 694 673 694 0.96
8 20 0.0092 1.1 11.2 5.5 2 23 764 785 763 785 0.94
9 20 0.28 33 6.6 0.1 2 19 812 829 811 832 0.89
10 20 0.0048 0.55 12.1 6.8 1 23 883 906 883 906 0.97
11 20 0.0053 0.61 12.0 0.9 1 23 943 966 943 966 0.97
12 20 2.5 2.9e+02 3.6 0.9 2 23 1021 1041 1020 1041 0.85
13 20 2.5e-05 0.0029 19.3 0.8 1 23 1047 1069 1047 1069 0.98
14 20 0.0003 0.034 15.9 2.3 1 23 1075 1097 1075 1097 0.98
15 20 1.4e-05 0.0016 20.1 2.9 1 23 1103 1125 1103 1125 0.99
16 20 0.00021 0.024 16.4 0.3 3 23 1151 1171 1150 1171 0.99
17 20 1.9e-06 0.00022 22.9 3.3 1 23 1177 1199 1177 1199 0.99
18 20 1.3e-07 1.5e-05 26.5 1.4 1 23 1205 1227 1205 1227 0.99
19 20 0.00035 0.04 15.7 3.8 1 23 1233 1255 1233 1255 0.96
20 20 0.18 21 7.1 5.4 1 21 1261 1281 1261 1285 0.87

Sequence Information

Coding Sequence
atgacgAGTGAGTGTTTTATTAATGGAGTGCAGTATACATGTCGCACTTGCTTTGATCCAGGAGCAACAGTATATCCTCTTGCAGAGGAGTGCAGCAACTCTAAAAGTTGGCGAGATTTATTGACCGATATTGTTAAGTTAAAGACAAACGACGACGAGTTGCTTCCAAAGACCATTTGTTCGAAATGTTTAGAGAAACTTATCAGTTACTACGATTTTATACTTCATGTTCAAAATGTGAATGAAAAGTTCCATCAGCTTTTAGCAAGTGGCAAACCTATTCCACAAAATGATATTCTGGCCAGCAGCTCTAAAAATACAGCAGAGTTCTCAGCAGTATCTGCCTCTACATTGCCTTTGGGTCAGTGTGTCGCCGAAATTAAGTGTGAAGCCGAACGTCTTATTCCTTAcgatattgttttaaataacaaCAATGGAAGGAACGATGCAGTAAAAGAAGATACTTGTGATCCTTTTATGGAAACTTTGGAAGAGGATGTTGAGCTCGCTTTAGATATGTTGCAAGACCAACAGAGaagATCCCAAAATAAAGGCAATCGAGTTCTTGAAGATTATATTAATGATGATAATTCTGATAACAGgtCCTCATCCTCCAGGAGTGCAAGTGAACACCAATTACCCACTAGtcAGCCATTCGAAAAGGAAAGTGAAGAACAATTGTGCAAATACTTTCCAATGGAAAAAGTCAACCATAATTTCGTGTGTGGGATATGCAACAAATCATATACTTGGGACAGAAATTGTCGCAGGCATATAAGCAGGACGCACCACCAAGGTAAATCGTACAAATGTGCATTTTGCGATCAGCATGCGCAATGTAAAAGTTACTTAATTGGACATCTTCAACGTGCACATCCAGACGAATCATTTGAATCTAACGCAAAACAATTAGGTCTTTTTTTTGGGGAACGTCTTTATAGCAAACCTCTTCTATTACCACGAATAGAATGTAAACTGTGTTGTACtacatttttaactaaaaagaaACTTATTCAGCATCTAGAGAGCCATAGTGAGGTTAATACTCTAAACAGTTTAAAACTAAGCAGTGATATTATTCACCGTTGGTTCAAAACTAAGAGAAACTTGCaagttataaaaacaatgatatGTAAAGACATTCGAGAAAAAAACTGGGTCAaatattatacaattttaaatgatttttcttaCGAAGTATCCATTAGTGATACGGATGCAGATGATTTGGAAGAAGAAACAGAAGCAGctgtcaaaaaatataaatgcgaATTGTGTGGAAAAgactttttgtataaatatcaaGTGTTTGCTCACTTGAGAGAGGATCATTTGAACGAAAAAACTCCTTTGAAATGCAGCCATTGTAATTTGGAATTTGtatcaataaaaatgtatgaacAACACAAAACAACCCACTGTCAGtctaaacataaaatattgCGTTGTTATAATTGCAAGGGCAAGTTTGTCTGgctcgaaaatataaaaaaccacaATTGTATTACGAAAATATTGGATATTGAGAAACCTCTTAATGTTGAAATAAATGAGAGTTGCAATGATGAAATGCGTTCATCGCCAAAAACtcttaatgttaaaataaatgagAATTGCACGGATGAAATGCCAGAAAATATCATAAGATGTGGTCTTTGTGACATGACCTTTGAAAAACTACGCGATTTACGACAACACATGCCCTTGCACGCCGATGGCAAAACTGGAGTTGACTTTAGTGGTTGCATTTATGTAAATCAATTTGAAAATGTATCCAGCAATCGCGAATTGTTGCAACAAAAGATTAAAAATGCCTTCACGAAACGTCAAATAAGTCAGCTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATAGCGATGAAaatgatgctgatgatgaaaAAAGCTATTTGTGTGAATTGTGCtatgaaacatttaaaaaacgaaaacttCTGTTTAAACATCAAATTGAACAACACAAGGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAGTATGTTAGTATTGATTTGTTAGAACAACATATGAAAAGAGAGTGTTGGAATGAACATCGACGAGTGGCTGAACAATGTGATTGTTGTAAAGAGCGTTTTATATGGCCAGATAGCATGCTGAGACATAGAGAAATACAGcggtacataaatattgaaaattcgcAAACGGATAACGTGGCACAGAAAACAATAATAGCTTCATCAATCTCCAACTCTGATGTGTCAAGTGCCAATATCGaagtttgttattgttttttatgtCCTAAAACTTTTGCCAATAATGATCAGTTCAATCATCATTTCATCCGTCATAGTTTCGGACTATCCACTATCAAAACTGTTGCCAGCACAATACATTCTGTATGGTGGCCAAACGGCAAAAAgataataaaatgcaaaatatgtgatcaagtatttttaaatatggccgaattaaatgaacatttttcttctaaaaattcccaaaacatgTGTGGAGGAGGGCAACATTCAGTGGCAAATTACTCTATTACTAATCAAATGGGGTTTGAGTTACATTTAGAGATGGATTCGGAAACAGAAACTGAGAGCATCAAAAATGAAGAAAATGAAAAGACATTGCCGTATAAATGTTGCATGTGTACTAAATCATTTAagcgaaaatttcaaataactcAACATCAAACATCGATGCACAATTATGAATTGTTGGAACTCAAATGCGAACGTTGCTTTTTTAGAACTGTTTCACAGAAAGTCTTAGATTATCATAAAGTAGGCCAGTGTTTTAATGTTGAGAAATTGTACCAATGCGATCAGTgtaatttcaaatttatgtgGCAAGAGAACCTCGAGAAGCATATTTCGATATTTCATACTTCGGACGTTTTCGTCAAAGCACTGCAGGCGAGTAACACAGCGAGTAATACCAATGTACAATGCCTTGAAGCAAAAGAAGCTTCCCAGAAGGATTTGTCGTCAGCATTACATGGAGAGGATTCAGATGCAAGTGACTGCAGTCAATCTAAAGATAAGTGTAAATGTCCCATATGTGGAATTTACATTGCCAAAAATAGTTATTCAGAACATATTAGGAGACACGAATGTGACAAATCCTACAAATGCGATTTTTGCGAAATTGCCTTTATAACAAGATCGTCATTAAAGAAACATCAGGTCATGCATACGGGAGAACGTACTTTCACATGTACATTATGCTCGAAATCGTTCAAGCTGCGAAAAGCTCTAAATGTACATAAACGTTTACACGCCGAAAATCTATCATACAAATGCACAATTTGTTCAAAATCATTCTTGCAATCGGCACATCTGACTGCTCATATGCGATACCATTCGGACGAAAAGCTGACTCCAGACAAGAAGTCGGACTCAACCCAAAATGGACAAGTGAAGAGAAAGACGAAGTTGTGTCCTATTTGTGGTATCTGTTTGTCATACAAAACGAGTCTTGCAATACATATAAGAAGCCATACGGGGGAGAGGCCATTCACATGCGATCTTTGTGATAAAACCTTTGTTACTAAAGTCCATTTAAATCTGCATCGACGCACACACTTTACTGAACGTCCTTTTAAGTGTACAACTTGCGAAAAATCTTTTGTCCGTAAATCCAAATTAATAGCACACATGCGCATTCACACTGGAGAGCGTCCATATCAGTGCACAGTTTGtcagaaaaaatatacaaattggtGCAATTTGAAGGAGCATTCGCTTAATCATACTGGCAAGAAATCCTTTCTATGTGAGATTTGCAATAAATCCTTTAAATGTTCGTGGTATCTCAAAAAGCATCGTGTCAGATGTGCCCATCATACAGAAAACATTTAA
Protein Sequence
MTSECFINGVQYTCRTCFDPGATVYPLAEECSNSKSWRDLLTDIVKLKTNDDELLPKTICSKCLEKLISYYDFILHVQNVNEKFHQLLASGKPIPQNDILASSSKNTAEFSAVSASTLPLGQCVAEIKCEAERLIPYDIVLNNNNGRNDAVKEDTCDPFMETLEEDVELALDMLQDQQRRSQNKGNRVLEDYINDDNSDNRSSSSRSASEHQLPTSQPFEKESEEQLCKYFPMEKVNHNFVCGICNKSYTWDRNCRRHISRTHHQGKSYKCAFCDQHAQCKSYLIGHLQRAHPDESFESNAKQLGLFFGERLYSKPLLLPRIECKLCCTTFLTKKKLIQHLESHSEVNTLNSLKLSSDIIHRWFKTKRNLQVIKTMICKDIREKNWVKYYTILNDFSYEVSISDTDADDLEEETEAAVKKYKCELCGKDFLYKYQVFAHLREDHLNEKTPLKCSHCNLEFVSIKMYEQHKTTHCQSKHKILRCYNCKGKFVWLENIKNHNCITKILDIEKPLNVEINESCNDEMRSSPKTLNVKINENCTDEMPENIIRCGLCDMTFEKLRDLRQHMPLHADGKTGVDFSGCIYVNQFENVSSNRELLQQKIKNAFTKRQISQLYQAIDKDGKEMDISDSDSDENDADDEKSYLCELCYETFKKRKLLFKHQIEQHKDVSMPFTCKECKMQYVSIDLLEQHMKRECWNEHRRVAEQCDCCKERFIWPDSMLRHREIQRYINIENSQTDNVAQKTIIASSISNSDVSSANIEVCYCFLCPKTFANNDQFNHHFIRHSFGLSTIKTVASTIHSVWWPNGKKIIKCKICDQVFLNMAELNEHFSSKNSQNMCGGGQHSVANYSITNQMGFELHLEMDSETETESIKNEENEKTLPYKCCMCTKSFKRKFQITQHQTSMHNYELLELKCERCFFRTVSQKVLDYHKVGQCFNVEKLYQCDQCNFKFMWQENLEKHISIFHTSDVFVKALQASNTASNTNVQCLEAKEASQKDLSSALHGEDSDASDCSQSKDKCKCPICGIYIAKNSYSEHIRRHECDKSYKCDFCEIAFITRSSLKKHQVMHTGERTFTCTLCSKSFKLRKALNVHKRLHAENLSYKCTICSKSFLQSAHLTAHMRYHSDEKLTPDKKSDSTQNGQVKRKTKLCPICGICLSYKTSLAIHIRSHTGERPFTCDLCDKTFVTKVHLNLHRRTHFTERPFKCTTCEKSFVRKSKLIAHMRIHTGERPYQCTVCQKKYTNWCNLKEHSLNHTGKKSFLCEICNKSFKCSWYLKKHRVRCAHHTENI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01397774;
90% Identity
-
80% Identity
-