Svit001413.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:14212560-14217811[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.072 11 7.8 4.2 1 23 1177 1200 1177 1200 0.97 2 12 0.00025 0.038 15.5 5.3 2 23 1364 1385 1364 1385 0.97 3 12 2.4e-05 0.0036 18.7 0.3 1 23 1391 1413 1391 1413 0.97 4 12 1.5e-07 2.3e-05 25.6 3.6 2 23 1420 1441 1419 1441 0.97 5 12 7.3 1.1e+03 1.5 0.1 6 23 1455 1472 1453 1472 0.95 6 12 0.0079 1.2 10.8 3.4 3 23 1479 1500 1477 1500 0.95 7 12 0.14 21 6.8 0.1 2 23 1511 1531 1510 1531 0.96 8 12 0.0002 0.03 15.8 0.8 1 19 1537 1555 1537 1556 0.96 9 12 0.00013 0.019 16.4 0.4 1 23 1567 1589 1567 1589 0.98 10 12 0.00022 0.033 15.7 9.0 1 23 1595 1617 1595 1618 0.96 11 12 0.0012 0.18 13.4 4.7 1 23 1623 1645 1623 1645 0.98 12 12 0.0014 0.22 13.1 6.0 1 23 1651 1673 1651 1674 0.96
Sequence Information
- Coding Sequence
- ATGGGTGGAAACGTACAATGTCCCGTTTGTACTTTGTTCCTGCTTCCGGGCATGAATTTGTCGGACCATCTGGAAACTCATCCAAAAGAGCAGGTCATAAAAGCCCTGGTTCAAATGAGCCTTAAAACTGAGACATCTGAATCAATAACACCAGATACTCCTAAAAAAGCCAACAAAAGTTCTTTCTCAGATCCTGATGAAACTTCTCATCTGGCCACAGAGGATGAAAGATCTTCTCCGGTATCGGAAATAAGTGGCAGTGCAAGTGACATTGCAACTGGTATGGTAGAACCATCAACTACAAAACGAACTGAAAAAGAAAGCAATAATACATTGCTCCAAGCCGCCGCAGCGCCTTCAAATGTATTGAACAGACAAAGTggatacatatttgaaaataacaatagCTGCAGCAACAGCAGTAGCAGTAATTTCTTTGGCCCACCGACTCCATAttatcatcaacaacaacaacaacaacaaaatcatcatcatcatcaacaattacagcaacagcaacatcatcaacaacatcaacaaaatcTAAATCATCAACAACAAGTTAATCACAACTATCAACCTTATCATGGTCTTTCGCATGGTGGAAATAACAATTTTACTGGTCACGGACCTACGCATCCTCCAATGCGActtttCTCCTATCAACCAACACCCAAGCCATTGCAACCACCCCCTGCATATGGCGCCGCCATAAGTCAACTTCGATCTCAAAATAGCCAAAATTTAATGTCAAACACAATTCATCGTCCGTTGTATTCTCCAGGAAACTACAACCTTCCGGGATCGGCGTCAACATCAACATTGTCATCATCGACACCATCTCGTTTGCCTCCTCCACTTCCGCCACCACCTCTTAACCAACGCTATCAGTCGAATTTCGAAACAATGGAAGCATCGTTTACTGACGCAGATGATACAAGTGCAATATCTCCAAGGCGAACTTCGATGACACCACCTATTAGACCTCCTCCCCAATTGTATCGTTCACCTCAATCTTCATCAAATGCCCAATTCAGTAGACAGTCAAGCTCCCCCTATTCAGTTATGTCAGGCTCTCCATCCGTATTGAGATTTGCTGAATCGCCTGTCACAGCGCACTATCTAGAGCGAGAGAACGGTGATTTCATTGTGCAAGAAACACCCAAGCATGTGGTGGAATGTGTAGAAAAAGATGATGGAGAATTTTCTGTGATCGAACGAGTCTATCATATGCCACCGAGTGTTGTTCAAAtcaatgaagatgaagaagacgAAATTTCTGAACACGGATCGAATAGCGAAGATGTCAAACTGATTGAGGACGATCGTCAGAATGAAAATTGGACAAGTGGTGAATCTTCAGATCAAGGACAAGAAGCATTAGATAATTcagataaacaacaaaaaaaatctggaatAACCGTACTCAGTGATGTACAATTAGATTTAAGTGAATATCTAGACCTAATGGGTAACATTATAGCATCTGGAAAAGTTGCTAAACATCGATCCGAACTCATAAAGATTGAAAAATTCGAACCGGAAGaagtaaaagaagaagagaCAATATGTCTGGATGACGATGATAATGCAGCTGTTtctttaataaacaataataatgagAATTGTGAAGAAACCGAAAAACACAAATTACAAGTTAGTAATGAGACAGAAGCGTATTGCTCTCTGCCATTGCAatcggatttttcaaaaacagaatcTTCTGCATCTACATCGTCAGTGGTTACAATGACAACAAGCGTTATTCGTCTTGCGGCAACTGTCAATCCAAAACCCAGTACACTTGCAACtgcaaaaaatattgacaagCCTTTGCATGCAGAATCCCCTAGTACAATAACAACGACAACAAAAGTTGAGGAACAAATGGAAGTAAGTAACGTTGAGGAAGAGCAGCCTACAACTAGccttaaaatagaaatagaatcaATAAGCAATAGTAAATCATCTTATATGGATGTGGAATTCGTTGAAACAAGCACACCTACAAACAAGACTGAGGAAGCAATAAAAGCAACAactttagaaaattcaaaaacccaaGCTCCAGTAGAAGATATTTCTTCTACACacccaaaagaagaaaaacaacaagaaaaacatGAAAGCAAAGACGTTAATTTACCAATTAGCTCGTTCCAACAAACATTGAAGCGGCCAATAAAAAAGGGTCCGAAAAAGCTTATAATTAAGCCAAAAAACAAAGATGCTAGTACATCGCAGACAATTACCGAAAAGGCGGCAACTTCAATCAGTGTTCCCACGCCGCCAATTCAATTACCAATGCCAATACAAACACCATCTACCTCGACTAAAAATATCGATCTAGAAGAGCAAGAGCAAAAGGACGAATTAACTACAGAAGATTCCTCACCTCAAGATGAACTGAATAGTATTAAAATAGAAAGTGTATCTTCTGTAACATCGGATCCAATTCTCTTGAGACCTTTGCTTGCCGACGCTAATGAAAAACTTCCGCCAGAAGATGATCCGCAAATCCAACCCCAACCATCAACATCAAGTTCAATAATATCAGAAGAGAAAAGAGCAACAGAAGTGTTTGATTTGGAAGAACAAAAAGCGACCACCGATTTAACAGCATTACTTGATGAGTGTCTGaaaaaagaggaagaagaagagcATCCTATGCATTCAATATTTGGCATGGATATCAGAGCCAATGAAACTCTAAACAATGCACTGACTCCACCACCGCCAACGCCTGAATTCCCATCATCTTCTTTGTTTGCAAAGCCATTGACAACGACGACAACCGAGAATGTATCAATTCCAGAATCTATGCTTCTTGATGGCAGTGTCAGTAATTTGCATGAACCAGATGATAACCAACTCCACCAACACCAGCAGCAAGAACACCAGCAAAGTAACTCCAACTTTGTGGAGTATCCATTTAGTTTCCTTTATGGCGGCGAGGCAAACCACCAAGAAGAGGATGAAAAACACAATATTCCAGCACCAATTTACTGTACTGAGGACTTTAACAAATACAGCGTAAGTACAAGTGGAGGTAACAGTGCGAGTTGTACTTGGTATCAGTCACAAAGCAGTGAAAATGATTTCGAGATGGACGGAAAAGGAAGCTATCTTGATTTGGATTCGTGCAAGCGAAGTACCTCGTTTGCAGCCGCCACTGAGGGTAGCATGCCAACTTCGGATGCACTTAACATAAGAACAGACGAAAAGATGCCAGCAAAGGGTGAGATCTCAGAACAAGAGAGTAATTGTGGCGTGGAGAATTCATGGAGCCAACCGctTTACAATGAGTTTGCTGTTCGTTTTCCAAacccatatcaaaattttatgtcaaaTCAGGAGAGCTGGAGTCAAGATCATTACTTCCGTCCCCAGGATTTGAGTTCATCCGTTGAAACAAAGaatttcccTTTGCGTTCAACAGAAGAACCTTCTGCTGTTATTGACGCACTTCCATCAACGTCAAAACGGAAGCCTAAAGAACTAATAGCAAAATTGCCGCGAAAGAAGAACTTCCAGTGCACTCACTGCAATACACACTTTCCTCTGCTTAAAGAAAAGAACGCACACATGATAAAACAGCACGGTTATAAGCGTGTTAACCGTCGACTCATACGTGACCCACCGACGTCAACTGTTACAACAGCAACTCTTAATGCAGTTGACCCCGCCGCAGCTGCATCTTTGCTACTGGGCCTGGATGGAGATGCACCACCATCTTTGTCTGTTGGCGAAGATGAAGACTCCAAAGTGGCGATTGTTAAAATCGAACAAGAGAACCCAGATTGTAAGAACAAAAATCTATCTAACTTGGCAATTAGTAGCAAAAAAGTTTCTTCTTCCTCATCAACGGCAAACAGCGGTACAAATGTATCACGCACTAAATATGACTCGATGCGGGCACGAGATAATCGAATgcttatcaattttaatttgagtgcgttaaatgttaaaaatgaagGCGAAGTGCACAACTATTATTTGGAGTCAAAATCGTCATTTTGCTGTTTCGTTTGCAAGCGGGACTTTCTAACAGTTAAGCTATTTGACGAACATTTAGTTGAGCATCCCGCCGAATGTTTTACATGCCACAAAAAGTTCACAAGATGGAAAAACTTTATGGTTCATCTTAAGCGTCATTTAGGTTGGAAAGATTTTGCATGCACTTATTGTGAAAAGAAGTTTGTTATACGTAGTGCTTTGGTAGAACATATGCGAATGCATACTGGCCAAACACCActtaaatgtaaaatatgtGGAAAGAGCTTCAAGCGTTATTCGAACCTAACACAACATCGTAAGCGACATGGCACTAAAATAAATCGTTCCAAAGAATACGTTTGTTTTTGTGGTGAGGTTTTACCATCGAAGGCTCGCTTTATCTGGCATAAAGAGACACACGATCTAAAGCCAAAATGCTGTCCATACTGCAGAGATAGGTTTGTTCATGCCAATAGTTTGAGACGTCACATACGACTAGCGCACTCTGATAAATTTGATTACACCGAACCAATGGAGTGTCCTATGTGTAAGCAAATTTATGCCAAATCTAGTATCAAGGCCCACATGGCGACGCACTCAATGGATACACAACACGAGTGCCTAATTTGCAGCAAATCATTTAGTACGAAATGGAATTTAAAGATTCACAATTGGGTGCACGCCAATCGCACTACAAAACCTTTCAAGTGCGAGCAATGTGTGAAGGCGTTTGTGCGCGAAGTAGATTACAACAATCACATCAATTCGCATAAACAAATCAAGCCCTACACTTGCGAACATTGCGGCTGCAAGTTTATCCGCAAATATAACTACATTCGGCACCGACGCGAGCACCATGGAAACAAGAAGTTCACCTGCGATCTCTGCGGCAAACTCTTCCACCGGCACTACTATCTAATTGAGCATCGGCGCATCCACACTGGCGAACGACCATTCCAGTGTACGATATGTGGCAAGAGTTCCACCACAAAGACTAACCACAACAAACATCTGAAGATTCATCATTCACGGGATCCGTTCACCTCGGAGGCGtaa
- Protein Sequence
- MGGNVQCPVCTLFLLPGMNLSDHLETHPKEQVIKALVQMSLKTETSESITPDTPKKANKSSFSDPDETSHLATEDERSSPVSEISGSASDIATGMVEPSTTKRTEKESNNTLLQAAAAPSNVLNRQSGYIFENNNSCSNSSSSNFFGPPTPYYHQQQQQQQNHHHHQQLQQQQHHQQHQQNLNHQQQVNHNYQPYHGLSHGGNNNFTGHGPTHPPMRLFSYQPTPKPLQPPPAYGAAISQLRSQNSQNLMSNTIHRPLYSPGNYNLPGSASTSTLSSSTPSRLPPPLPPPPLNQRYQSNFETMEASFTDADDTSAISPRRTSMTPPIRPPPQLYRSPQSSSNAQFSRQSSSPYSVMSGSPSVLRFAESPVTAHYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDEEDEISEHGSNSEDVKLIEDDRQNENWTSGESSDQGQEALDNSDKQQKKSGITVLSDVQLDLSEYLDLMGNIIASGKVAKHRSELIKIEKFEPEEVKEEETICLDDDDNAAVSLINNNNENCEETEKHKLQVSNETEAYCSLPLQSDFSKTESSASTSSVVTMTTSVIRLAATVNPKPSTLATAKNIDKPLHAESPSTITTTTKVEEQMEVSNVEEEQPTTSLKIEIESISNSKSSYMDVEFVETSTPTNKTEEAIKATTLENSKTQAPVEDISSTHPKEEKQQEKHESKDVNLPISSFQQTLKRPIKKGPKKLIIKPKNKDASTSQTITEKAATSISVPTPPIQLPMPIQTPSTSTKNIDLEEQEQKDELTTEDSSPQDELNSIKIESVSSVTSDPILLRPLLADANEKLPPEDDPQIQPQPSTSSSIISEEKRATEVFDLEEQKATTDLTALLDECLKKEEEEEHPMHSIFGMDIRANETLNNALTPPPPTPEFPSSSLFAKPLTTTTTENVSIPESMLLDGSVSNLHEPDDNQLHQHQQQEHQQSNSNFVEYPFSFLYGGEANHQEEDEKHNIPAPIYCTEDFNKYSVSTSGGNSASCTWYQSQSSENDFEMDGKGSYLDLDSCKRSTSFAAATEGSMPTSDALNIRTDEKMPAKGEISEQESNCGVENSWSQPLYNEFAVRFPNPYQNFMSNQESWSQDHYFRPQDLSSSVETKNFPLRSTEEPSAVIDALPSTSKRKPKELIAKLPRKKNFQCTHCNTHFPLLKEKNAHMIKQHGYKRVNRRLIRDPPTSTVTTATLNAVDPAAAASLLLGLDGDAPPSLSVGEDEDSKVAIVKIEQENPDCKNKNLSNLAISSKKVSSSSSTANSGTNVSRTKYDSMRARDNRMLINFNLSALNVKNEGEVHNYYLESKSSFCCFVCKRDFLTVKLFDEHLVEHPAECFTCHKKFTRWKNFMVHLKRHLGWKDFACTYCEKKFVIRSALVEHMRMHTGQTPLKCKICGKSFKRYSNLTQHRKRHGTKINRSKEYVCFCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICSKSFSTKWNLKIHNWVHANRTTKPFKCEQCVKAFVREVDYNNHINSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00427562;
- 90% Identity
- -
- 80% Identity
- -