Svit012949.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288109.1:23689135-23690731[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.6e-05 0.0099 17.3 0.1 1 23 54 76 54 76 0.97 2 11 1.1e-06 0.00017 22.9 1.6 1 23 82 105 82 105 0.98 3 11 0.00017 0.026 16.0 1.0 1 23 111 133 111 133 0.97 4 11 3.5e-06 0.00053 21.3 3.3 1 23 139 161 139 161 0.98 5 11 0.003 0.45 12.1 3.3 1 23 166 188 166 188 0.97 6 11 0.01 1.5 10.4 0.4 3 23 196 217 195 217 0.95 7 11 0.0033 0.5 12.0 0.1 1 23 223 244 223 244 0.98 8 11 0.00014 0.021 16.3 4.4 1 23 250 272 250 272 0.99 9 11 2.4e-05 0.0036 18.7 2.1 1 23 278 300 278 300 0.99 10 11 0.018 2.7 9.7 0.6 2 23 307 332 306 332 0.83 11 11 0.00073 0.11 14.0 2.9 1 20 338 357 338 358 0.95
Sequence Information
- Coding Sequence
- atggatACAACAATGGATCTGAAAAGATCCCAATCGGAAGACGATGCTAGCAGTTCCTTACGAGACAGTGGCATATCCTTGTCCGATGAGACACTTGAAGAAGAACTAATAAATGAACCAGCAGAAAAGAAGAGGAAATGGCGAAAAGCACCCAAAAAATATGACTGCGCTGTGTGTGAGAAAGAATTCAAAGGCCTTACCGATTTGAAGCGACATCTATTGATTCATTCGAATCAGAAACCATTCAAATGTGAAATGTGTGAGAAATCATATCGACAAAAAGTCAATTTAAGTTATCACATGAAAATGGTGCATAGCAATCATAAGGAATTCATTTGTGGATTCTGTAAGAAACCATTTGCCTACAAACAACGCCTTAGACTGCATTTGCGGGTGCATACTGGAGAGAAGCCTTACTGCTGTCAATATTGCACAAAGTCTTTTGCCAGAAGTGGACAGCTAAAATTGCATTTAGAAACCCACGAgacaaacaaatttcattgtGAAATATGCTCATCCACATTTAATAGCGAAAAAACTCTCAAAACTCATGTGTCACGGCATGGCGATGAACCAAATCGTATTTGTCAAATATGCAAAAAAGCATTTATGAATTCGAAAATTATGCAAGCTCACATGACAAGAGTTCATTCCAATGCTGAACAATTTGAGTGCCCGATTTGTGAACTAACAATCACCACAGAGGATCTCCAAACGCATATGCAAATTCATAATCCAACTAAACGTTTTCAGTGCGATCACTGTGAAGCTGCTTTTGCGCAAAAATGCCAGTATAAAGTTCATTTGAGAAAACACACTGGCGAACGGCCATTTCAATGCAGGGTTTGCTGGCAGACTTTTGCTCACAACAGTGTTCTTAAATTGCATATTCGAAAACACACCGGTGAAAAGCCAATAAAATGCTTGCTGTGCAAGGATTCCTACGTAGCCTTTTCTCAATTGGCTCACTTAAAAACCCACATGCGTGCcatacacaaaaaagaaaactcctACGCCTGCGAAGGATGCAAAGAATGTTTCAAAGTTAAATTTCATCTCGAAAGACACAAAGAAGCTTGTAAGAAGTATCAACTACTCAAACGAAATGATTCGCTTGAAGTTCACGAAAATTCCGAAGAAAACAATGAGCAATTAACTAGCCTTAGGTATCTTATAGCAGTGCTAATAAAGAGTATATCAACGCCAGAAAAACTCACCGATTTGGGTTTTGGAAAGAGGctaatcgataatgtgcttttAGCGTCTCTCAAATTGGCCAAacgaaaatgttttgaaaagaagaaaatgccCGAATTAGATCGACTGAAATTAAATGTACAATCATTCTTAGAATGGATTGTTCCTGAGGAGATATGGAATGAATTTAAAAAGGAATGTTCATCTATTGAGAATATTTTGGAGAAAATTGTAACAATGTATTTAAAACAGGTAACAGAGTaa
- Protein Sequence
- MDTTMDLKRSQSEDDASSSLRDSGISLSDETLEEELINEPAEKKRKWRKAPKKYDCAVCEKEFKGLTDLKRHLLIHSNQKPFKCEMCEKSYRQKVNLSYHMKMVHSNHKEFICGFCKKPFAYKQRLRLHLRVHTGEKPYCCQYCTKSFARSGQLKLHLETHETNKFHCEICSSTFNSEKTLKTHVSRHGDEPNRICQICKKAFMNSKIMQAHMTRVHSNAEQFECPICELTITTEDLQTHMQIHNPTKRFQCDHCEAAFAQKCQYKVHLRKHTGERPFQCRVCWQTFAHNSVLKLHIRKHTGEKPIKCLLCKDSYVAFSQLAHLKTHMRAIHKKENSYACEGCKECFKVKFHLERHKEACKKYQLLKRNDSLEVHENSEENNEQLTSLRYLIAVLIKSISTPEKLTDLGFGKRLIDNVLLASLKLAKRKCFEKKKMPELDRLKLNVQSFLEWIVPEEIWNEFKKECSSIENILEKIVTMYLKQVTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694047;
- 90% Identity
- iTF_00427509;
- 80% Identity
- -