Svit033673.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288110.1:106810155-106813465[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6.2e-05 0.0093 17.4 1.1 2 23 411 432 410 432 0.97 2 16 1.5e-05 0.0023 19.3 1.1 1 23 438 460 438 460 0.98 3 16 0.00026 0.039 15.5 0.1 1 23 466 489 466 489 0.98 4 16 3.9e-05 0.0059 18.0 3.5 1 23 504 526 504 526 0.98 5 16 4.6e-05 0.0068 17.8 2.7 1 23 568 590 568 590 0.97 6 16 8.3e-05 0.013 17.0 1.8 1 23 596 618 596 618 0.98 7 16 1.5e-05 0.0023 19.3 0.6 2 23 730 751 729 751 0.96 8 16 5.2e-06 0.00078 20.8 3.1 1 23 757 779 757 779 0.98 9 16 3.8e-05 0.0057 18.1 0.7 1 23 785 808 785 808 0.98 10 16 0.00055 0.083 14.4 2.7 1 23 819 841 819 841 0.98 11 16 6.6e-06 0.00099 20.5 0.7 1 23 854 876 854 876 0.98 12 16 0.019 2.8 9.6 2.0 1 23 882 904 882 904 0.97 13 16 7.9e-05 0.012 17.1 0.3 2 23 910 932 909 932 0.94 14 16 0.83 1.2e+02 4.4 0.2 1 23 940 963 940 963 0.90 15 16 0.26 39 6.0 1.9 2 23 972 994 972 994 0.92 16 16 0.0027 0.4 12.3 1.3 2 23 1000 1021 999 1021 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTCAAATTAGATGATTCTGTTTGTAGGGTATGTTTAAGTTCATCGGGCAGCATAACAATTTTCGATGATTGCGGCAAAGATGACCAATTTCGATATTGTACTCTACTTGAGGCTTCCAAAGACGATGGACTCCCATCAAAACTTTGTAAGAAATGCAACGACCACCTAAAAGTTGCCTACGATTTTCGTTTCCAAGCTATCTATGCTGagaaatattttcgaaaaactatATTCTTGCCGTCCTTTAAGAAGGAAGACGATGGCACCAACAGCAATGTCGGTGAAGTtgataaaaacacaaacaatcaTCCTTCAGATGAACTCGACGAGAATATGGCCGAGATTGATATGTTACTCGCGATTCATACTGATCGTGTTGAAGATGCAAATGATGGcaatgatgacgatgataataatgatgaaaTGATGGACAATGCTGAGTTCTTTGATGATGACAGTATAGATATCGATgagaaacaaattgaaatcaTTGGAATGGACACATTTGAAAAGGAAAAGCGTGATCAAAAAGTAAAGTTAGAAATCGCCAATGTCCCACCGCCACTAGTTTCCATTACTGAACGTAGTACAAGGTATGAGATATCAACAGAGGCATTGTCAAGCTTACCATTGGGATCCCCACAATCGGGAATTAGCAATAATAGCAATATTATACAGCAAACTCATGTTAGCCTAGATGAAATGCAGCAGTACCCTGATTCGGTCAGTTTTGGCAATCACACACAATCCATTCAAGACATAACCGTGGAGAGTACCAATGGAAGATCAGAACATCTAGAAATCCATCGTGTCTTAAAGAATGATCCGTCTGGCTATGATTTTAATGTTCCATCAACGGTAGCTGTTGGCTACGGCTCTTATCCCACTTCATCACAAATTCAGTTCCAACAAATTCCCCTCCAAATGGAATACGAGcaacaaaataattcattgCCACTACAAGAATCTGTAAATGCAAATTCTGAGAACTATGATTACCATTATCAAGAATCATTCTCAACTTATAGTACACAAACTAATGATATAGTccctcaacaacaacaacaacaacaggaaAACATTCAACAGTTTCAACAACAAGATCAACAAGTCTCCGAAGAATTACCCCATGACAGCAAATTTAAGACTGAATATATAGAGGGAACAGTTGTTTCGAAGTCAAAGAAAGCAAAAACTACTTCATCAATCCGCAAAGATAGAATCGAATGCAATATTTGTGGAAGTGTCTTCACTCATTTGAATTCGCTCAAAACTCATCTGCTCAAGCATTCGGGCGAAAAGCCTTTCAAGTGTGAATTTTGCGATAAAGCTTTTGCTCGAAAAACAGTTCTCAATATACATCGCCGATTACACACCGGTGAGAAGCCATACAAGTGTTCCTTGTGCCCAAGTGCCTATGTCACCAAAGAAGCTTTGGcgCGCCATTTACAAAAAGACCACGAAGAAGAAGTGGGAGCAAACTTCCGTCGTGATAAAGTGTCATACATTTGTTCCATATGCAATAAGTCTCGTTGTTCTAAGTATTCCCTAGCTTCTCATATGAAGACACATTTTAATAATGAAGCAAAAGTCCGTCGAAAGATTGTTCgcaaaagaaaggaaaaaaagccAGCAAGTCGAGGCGATATGTCATCACCTGGAGAATTAGTGGCACAACACAatatgcttttgaaatattcttGCAAAATCTGCCATAAGGCCTTCCCCAACAAATGGGAACTGTGTACACATGCGGAATCACATAACATGCACAAAACATTCGAATGCGATGTTTGCCAAAGGACGTTCGAAAAGAAATTCCAACTGCTTTATCACTTGCAAACCCACGAAGGTGGTGAAGAATTGGTAAAAGCAAAAGTAAAACCAAGCAGTGTCAGTGAACAAAGGAGTTCTAGCAAAGAGATCGATGAAAATAAGACAGATAATGAGCCGTTGCCAGtgtcagctaaaaaaaaacttagagtGTCGAAGCGCCGGAAAAAGATGTCAAAAATTGATTATGAAGAAGAACAGGGTGATGAAGATGAGAATGAAATGAGCgataaaagtaaagaaaaaaattgtgacgATGATAAATCGGcgacaaacaatttaaataaaaagagatCAACTCGAGCTCAACGTGAAAATCTGAAAGTAATGCGAACAAGTAGTAAAATTGAGTGTCTTATCTGTCAAACCGTTTTTACCCATCCAACGTCCCTCAAAACTCACATGCTTGTACATTCGGGTGAACGCCCATTCAAGTGTGATCACTGTGATAAGTCATTTGCCAGAAAAACCGTTCTTAATATCCATCGTCGATTGCACACTGGTGAGAAGCCATATAAATGTCCTCTCTGTGATAGTGCTTGTGTCACAAAGGATGCACTTATGcgGCACATGTCTAAGGACCATGATGACGATAGGGAAGCTGATCGAATAAAATTCACTTGCGGCGTTTGCCATAAGTCAATGGGTACCAAGTACTCTCTCCAAACGCACATGAAACTTCACGAACAGAGCACTACAGCAAGTACAGCTGAGCTGAATTTCTCTTGCAACATGTGCACTGAATCATTCGACACTAAGTCCGATTATGCAAAGCACATGGAAGTGCATGATTCGCATAGAAATTTCCAGTGTGACATCTGCCAGGTGACCTTcgagaaaaaattcaaacttctgTTTCATttacaaacacacaaaattgaGGATCTACCGTGCAAGAAATGTGGCGAGACTTTTACTATAAGGGAAAATCTCATACAACACGTCAAACTGCAACACATTGCCCATGAGAATATGGACTTTCAATGCCCCACCTGCAATATGGGGCAATATGATACACGAGATTTAAAGTTGCACGTGTTGAATGCCCACGAAGTGGTCATGGGTGAATTAAATTCCTGCGATATGTGCGGTGAAAGCCATTCTACTGCAGCAGAATACTATAAACATATGCATGATAAACATGATTCAATCAGCAAAACGTGCAATGAGTGTAAGAAGTACTTTGACTCGCGAAAAGCTTTCGATAAGCACATACTTGCCCATTATATGTGA
- Protein Sequence
- MSVKLDDSVCRVCLSSSGSITIFDDCGKDDQFRYCTLLEASKDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSFKKEDDGTNSNVGEVDKNTNNHPSDELDENMAEIDMLLAIHTDRVEDANDGNDDDDNNDEMMDNAEFFDDDSIDIDEKQIEIIGMDTFEKEKRDQKVKLEIANVPPPLVSITERSTRYEISTEALSSLPLGSPQSGISNNSNIIQQTHVSLDEMQQYPDSVSFGNHTQSIQDITVESTNGRSEHLEIHRVLKNDPSGYDFNVPSTVAVGYGSYPTSSQIQFQQIPLQMEYEQQNNSLPLQESVNANSENYDYHYQESFSTYSTQTNDIVPQQQQQQQENIQQFQQQDQQVSEELPHDSKFKTEYIEGTVVSKSKKAKTTSSIRKDRIECNICGSVFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALARHLQKDHEEEVGANFRRDKVSYICSICNKSRCSKYSLASHMKTHFNNEAKVRRKIVRKRKEKKPASRGDMSSPGELVAQHNMLLKYSCKICHKAFPNKWELCTHAESHNMHKTFECDVCQRTFEKKFQLLYHLQTHEGGEELVKAKVKPSSVSEQRSSSKEIDENKTDNEPLPVSAKKKLRVSKRRKKMSKIDYEEEQGDEDENEMSDKSKEKNCDDDKSATNNLNKKRSTRAQRENLKVMRTSSKIECLICQTVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGVCHKSMGTKYSLQTHMKLHEQSTTASTAELNFSCNMCTESFDTKSDYAKHMEVHDSHRNFQCDICQVTFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHVKLQHIAHENMDFQCPTCNMGQYDTRDLKLHVLNAHEVVMGELNSCDMCGESHSTAAEYYKHMHDKHDSISKTCNECKKYFDSRKAFDKHILAHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894178;
- 90% Identity
- -
- 80% Identity
- -