Svit021048.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288109.1:74275808-74276275[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-09 1.3e-06 29.0 0.0 1 40 16 55 16 59 0.92 2 2 6 4.6e+03 -1.5 0.0 32 44 121 134 117 135 0.76
Sequence Information
- Coding Sequence
- ATGAACAGCTCAGAAAAAATAACGAAACGCCAATTTCATAACTACACCGAAGATGCGCTTAGTAACgccttaataaaaataagagagCACAATTGGCCAATTAGAAAGGCAAGTAGGGAATACGGGGTTCCTAGAGGTACATTACAAGACCGCATCCATGGCCGAGTTGTAGAAAAGCCAAGAAAAATGGGACCGGACAATGTCCTTAGTTTAGCCGAAGAGAATCAGCTAGTAAAGTGGCTCGTAGACCTTGCTAAGTGTGGCTTTCCACAAAAGCCCTCAGACCTCTTGAATATGGTCCAAAAGATTCTCCGTAAGGAAAAACGAAAGACTCCATTTAATGATAGCCTACCCGGTAAAACGTGGTACTACGCCTTCCTAAAGCGTCATCCTGAACTGTCCCTCAGAACACCAGAGGGACTCTCAAAAGGATGGGCTATCGTGACAGAGGAGTCAGTAAGGAAGTGA
- Protein Sequence
- MNSSEKITKRQFHNYTEDALSNALIKIREHNWPIRKASREYGVPRGTLQDRIHGRVVEKPRKMGPDNVLSLAEENQLVKWLVDLAKCGFPQKPSDLLNMVQKILRKEKRKTPFNDSLPGKTWYYAFLKRHPELSLRTPEGLSKGWAIVTEESVRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01318163;
- 90% Identity
- iTF_01318163;
- 80% Identity
- -