Svit012443.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Syrphus vitripennis
Gene Symbol
lov
Assembly
GCA_958431115.1
Location
OY288109.1:15321694-15339143[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-17 8.7e-15 55.2 0.0 1 44 635 678 635 679 0.96

Sequence Information

Coding Sequence
atgttaAACGACTCCGGAGGCGTGGAAGCACGACAACGAAGGCGCAGAAGAACGACTCCATCAccgacaacaaaaacaaaaaggacgaGGACGATTATCACCCCCACAATGACGACAAACAACGCCAGCAATCAGGACCACTACAGTTTGCGGTGGAATAACCATCAAAATCACATCCTCAGAGCATTTGATGCACTCCTGCAAACCAAGGCTCTGGTCGATGTGACGCTCGTGTGTGCGGAAACCAGCATTCGTGCACATAAGATGGTCCTCTCAGCCTGCTCACCGTTTTTTGCGCGAGTTTTCGCCGAAACTCCCTGCAAGCATCCGGTCATAGTTCTGAAGGACTTCCGAGGATGGGTGgtacaagctattgtggacttTATGTATCGCGGTGAGATAAGCGTTCCACAAGAACGACTTCAGACACTCATTCAAGCTGGGGAGTCATTGCAAGTTCGAGGTTTGGTGGAGAGTTCGGTGCCGGAGACAACTCCAACCCCGGCTGCATCACCTGATGACTTCGGAATGATCGATACGTCCCTGATGTCTTCGGAGCTGGAACGTTGTTCGAGTTTCGATGATGAGTCACCTTCGATGGTGACGTCTGGTTCAAAAATAATCCTGCCATCCCGCCTCTTTGCATCGTCGTCGTCACACAACGAGAACAATGTACTCAACACATCGACAGGATCCCAGCCGGAGCTTTGTACATCTCCGATGCCGCGAAGAAAGCAGGCCAGACCACGTCGGCGGTCGGGGGAGTTTCCTCCTCAAGAGGAGAGCAAACCATCGACGCCAACTCCCATCGAGGAACCCGCAATAGCAGTGATAAAAAACGAAGAGGAACCATTGGAGAGTGAGGACGTCAAGGAAGACGAAGAGGAACATAACCCACCCGAACGACCAGAATCCAGTTTAAATGGTGACGCTGATGCCGAAgacgaaaatgaaaatgaacatcAACCCGAGGAGAAAGAGGAAATCCACAAAAGGGACAACGAAAGTCCTGTCGAGGGTCCAGAAGATCTCTGCACAAAGAAAGACTCAACTGGCAGTACTGATCAACAAACTCTCATCGAAGACAGCGccaacatcatcaacaacaacaacatcaacaacaataataacacaaATAAACTGAACAACAATCGAATAGTCCTGTCACTTAAGGACATCCGTCAATTGAATAAACCGCCATCTATTGGTCGGAGTAGTCATCCCTTTCCACCGAACTTGAGAGACCTCGATGCACAAATGCACGCAGCTGCAGCGGACTTTCACATGGATCAAATGGATTTGTCACTAGCAGCCGCTGCAGCGGCGGCAGCAGCACAACATCATCAAAATCGACAGGAGCAACAACAtcaacaccatcatcatcagcaacagcaacagcagcagcaacaacaacaacagcaacaacatgcCCAGCAACAGCATCAAgcacagcaacagcagcaacaacaacagcaacatcagtCTTATGCGAATAGTCTGCTGGGTCAAATGGGAATGCAAGGACTTCATCCACCCGGACAATTTGGTCACGAACGAATGGAGGACAGTATAAATCGTTTGAACAAGGAATTCACACCGAGTTCACCAATGAGCCTGCCATCACATTTCAATCCACCTGATGGGCCGCCACATCCACCGTCACCGCTGCCCTTTCCTGGTATGTCGTCGGCGTTGACACTAACGCCGCCACACATGTTTGGATTGGATTCCCCGCTAGGACTATTCCCGCCAGGTATTGATCCTGGCAAACTGTATAACCCGCTCATGGAAATGTCCGATCCTCGGGGACTAGGAGGAGATCATCCGCCATTtctcaaaaagaaaatgtCCCGCCCAAAAGGACAGCATTCAGCACCCAGAGGAGGACCACCTCGATCTTGGACCAATGCTGAATTAACCGAAGCTCTGCAGCATGTGTGGAATAAAAAGATGACCACCAGCCAAGCATCGCGAATATTTGGCATTCCCTATAATTCCCTGCTAATGTATGTTCGTGGTAAATACGGCAAGAGTCTCAAGCTGGAACAACTGCGAAAGGACTGCATAAGTGGCCCACCAGTTGAACTCCTACAAATGGGACTGAATAACAACAATGGCGGAAATGGTGGTGGAGGAGGTAGTGCCTCGAGTGGTAATAATGGAAGTAAAAATCAGGATTCCAATCGCAGCAAGGACTCACGAGACTTGGACTGCGGTGGAAGTGGAGGCAATGGGCCACCAGGTGGCCCCTTGGGTCCCCGGAGTTCAAGTTCCGAGCCGGATCTGCTATCGGGCCCCAACTCAATATTCAATCCATTCCAACAAGGTTTCTATCCCGACTTCCCGGGTGGCTTCCCAGGCCTCCCACTCGGCATGTTAAACCTCCTCCCGCCCGAAAGACACCAACAATCAGCAGCAGCTGCGGCCGCTGCTGCCGCCATGCATATGGCAATCGATGAAGACTGCAAATCGGATCGATCCAAACAATCGATGGATGATGAATTCTCTCAGCCATTGGCTTTGAATCGTGACGAACGTCGAGAGCTGACGCAACAAAATGGGCAGGATTGA
Protein Sequence
MLNDSGGVEARQRRRRRTTPSPTTKTKRTRTIITPTMTTNNASNQDHYSLRWNNHQNHILRAFDALLQTKALVDVTLVCAETSIRAHKMVLSACSPFFARVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVPQERLQTLIQAGESLQVRGLVESSVPETTPTPAASPDDFGMIDTSLMSSELERCSSFDDESPSMVTSGSKIILPSRLFASSSSHNENNVLNTSTGSQPELCTSPMPRRKQARPRRRSGEFPPQEESKPSTPTPIEEPAIAVIKNEEEPLESEDVKEDEEEHNPPERPESSLNGDADAEDENENEHQPEEKEEIHKRDNESPVEGPEDLCTKKDSTGSTDQQTLIEDSANIINNNNINNNNNTNKLNNNRIVLSLKDIRQLNKPPSIGRSSHPFPPNLRDLDAQMHAAAADFHMDQMDLSLAAAAAAAAAQHHQNRQEQQHQHHHHQQQQQQQQQQQQQQHAQQQHQAQQQQQQQQQHQSYANSLLGQMGMQGLHPPGQFGHERMEDSINRLNKEFTPSSPMSLPSHFNPPDGPPHPPSPLPFPGMSSALTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRGLGGDHPPFLKKKMSRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPVELLQMGLNNNNGGNGGGGGSASSGNNGSKNQDSNRSKDSRDLDCGGSGGNGPPGGPLGPRSSSSEPDLLSGPNSIFNPFQQGFYPDFPGGFPGLPLGMLNLLPPERHQQSAAAAAAAAAMHMAIDEDCKSDRSKQSMDDEFSQPLALNRDERRELTQQNGQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00310172;
90% Identity
iTF_00984372;
80% Identity
iTF_01396661;