Spip004224.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- stc
- Assembly
- GCA_905187475.1
- Location
- LR994573.1:4336810-4341793[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 1.9e+04 -4.0 1.6 15 19 333 337 332 337 0.81 2 13 0.055 5.4e+02 0.9 0.2 4 10 366 372 365 373 0.95 3 13 5.5e-07 0.0054 16.8 15.1 1 19 378 395 378 395 0.93 4 13 9.8e-07 0.0096 16.1 13.1 3 18 433 448 431 449 0.91 5 13 0.77 7.5e+03 -2.8 1.4 8 13 454 459 453 460 0.79 6 13 1.2e-07 0.0012 19.0 18.6 1 19 489 507 489 507 0.98 7 13 5.8e-05 0.57 10.4 16.0 4 18 555 569 548 570 0.86 8 13 0.045 4.4e+02 1.2 12.3 1 11 610 620 610 632 0.91 9 13 4.5e-10 4.4e-06 26.7 15.5 1 18 637 654 637 655 0.97 10 13 1.3 1.2e+04 -3.5 1.4 6 10 684 688 682 689 0.65 11 13 2 2e+04 -6.0 10.2 10 18 702 711 691 712 0.78 12 13 3.5e-08 0.00034 20.7 14.8 1 17 748 764 748 774 0.92 13 13 9.3e-07 0.0091 16.1 12.7 1 18 781 799 781 800 0.89
Sequence Information
- Coding Sequence
- ATGTCCGACGCGTTTCATCGGTACCACGACGCAGCAGGAGGCAGTGGAGGAGGCGGTGGCAACAGCAACAGCAGTGGTCCTACCACGAACAACAATTACGTGAACTTCAATCAATTCATGATGCAGCACAACATCATTGGCGGTGGTGGAGGCAGTGCAGGAGGCGATGGCGGAGGTGTGGAGCCCGTGGCGTCGTCCTCAACAAACCCATTCCATTACAACGGCGGCTACGGACACCAGCGGTATCAGATAGACGACTACTACTTCAACGGCGGTGGAGGAGAAGGTGGTGGCAACAATTCCGGGGTCTACAACTACATGCCGCGCTTCAACTACTCGAACTCCACCCTGCACGCCACGGCGGCGGAGTTCATCCCGAGATTCTCGGCCCTCTCACTCACTCCGGCGTCCTTCGGGAAGTCCAACGACGTGGCACCAGCCGACATTCAGAACGCCAACACAACAAACGGCACGAATGGCCCCTCGACAAGCAGAGCGCGGGCGCCAGACTCCCCGCCGAACAAGTCGCCTCCCCAGCGCTACACTGGCACCACGCCCAAGGGTCGTGAATCATCGTCACGCGGCTGTGCGGCCGCAGGTGCGTCGTCTTCACGGCGGCAGAACGGCCGCGACTACCATCGCAATCAGCGGTACGACAATCATCGCAGTAACAAGCGTCGGGACGACTGGAATCGCAACCGCGACCGTCTGAACTCCTTCCGCGAGGAGAAGTTCGCTCTGGAGAACGGAAAGGAAAGCCCACTCAACTCCCCGGAAAAGAAGTCCCCCAAGAAGCCGCAGCCGGAGAACGAGAAACTCTCGCAGCGCGAGAAACTCATCCGGGAGATCGAAGCGCGACGCCTCGAGTGTCTGGTGTGCGTGGAGCAAATCAAGAGTCACAATTCCGTTTGGTCGTGCCACAACTGCTACCACATCCTCCACCTGAGTTGCATCATCAAGTGGGCGTCCAGCTCGAAGTCACAGGACGGCTGGCGTTGTCCCGCGTGCCAAAACGTCGAAAAAGACGTTCCCCGGGAGTATTACTGCTTCTGCGGGAAGGTGAAGAATCCGCAGTTCAACCGCAACGACATCGCGCACAGCTGTGGGGAAGTCTGCGGCAGGATCGAGGGCTGTTCCCACGCCTGCACGCTCCTCTGCCACCCGGGGCCATGTCCGCCGTGCCAGGCAAACGTGACCCGCGAGTGCGGCTGCGGCAAGACCACCAAGACGATGCAGTGCTACCTCAAGGAGACCATCGAGTGCGACGCCAAGTGTCTGAAGCTACTCAACTGCGAGCTGCACGAGTGCGAGGAGAAGTGCCACGACGGCAAGTGCAAGCCGTGCGAGCAGAAAGTCGATCAAAAGTGCCACTGTGGCAAACAGGACCGTCAAGTGGCTTGCACCCGCGACTCGCACGACAAGAAGACCTACTCGTGCGGCAAACCGTGCGGCCGCGACCTCAGCTGCGGCAACCACAAGTGCAAGGACTGCTGCCACGCGGGCGAGTGCCGCCCGTGCAAGATGAGCCCCGATCAGGTGACCTCCTGTCCCTGTGGAAAGATGCCAGTGGTCCTGGAGCAGCGGAAATCCTGCCTAGACCCGATTCCTGTCTGCGATGGCGTCTGCAACAAAACACTGCGCTGCGGCCGTGCCGCACACCCCCATCACTGCACGAACAAGTGCCATCTGGGCAACTGTCCGCCGTGCAACAAGCAGACGGCGGTGAAGTGCCGCTGCGGTCACATGGACCAGATGATCAAGTGTCGCCAGCTATCGACCCGCGCCGATGACGCACGCTGCAAGAAGCGCTGCGTGAAGAAACGCTCGTGCGGCAAACACAAATGCAACCAGGAGTGCTGCATCGACATCGACCACATCTGCCCAATGCCCTGTAACTATACTCTCTCCTGCGGCAAGCACAAGTGCGATCAGCCGTGCCACCGGGGAAACTGCCCCCCATGCTACCGCAGCTCCTTCGAGGAGCTGTACTGTGAGTGCGGAGCCGAGGTCATCTACCCGCCGGTGCCGTGCGGCACAAAACGGCCGCCGTGCAAGCGCCCGTGTCTGCGCCAACACCCGTGCGACCACCCGGTCCAGCACAATTGCCACTCGGCAGCCAACTGCCCGCCGTGCATGATGTTCACCACCCAGTGGTGCTTCGGACAGCACGAGCAGAGAAAAACCATTCCATGCAGCCAGGAGAGCTTCAGCTGTGGGCTGGCTTGCAACAAGCCGCTGATTTGTGGACGTCACAAGTGTATCAAGCCGTGTCATCCCGGGCCGTGCCAGTCCGAGACGGGGGATGTCTGCAAGCAGAGCTGCTCTACACTGCGGGCCGCATGCGGCCACAAGTGCATGGCGCCGTGTCATGATGGAGAGTGTCCTGAAACGGCGTGCAAGGAAATGGTTGAGGTGACCTGTGAGTGCGGCAACAGGAAGCAGATGCGAGCTTGTCATGATTTTGCTCGCGAGTATCGTCGCATTGCCACCGCGCAACTGGCCTCATCTATGGCTGAAGTGCAGCGCGGCAACACCGTCGAGTTGAGCGACATTCTGGGACCGGTCAAGATGAACAACAATAAGGCCCTCGAATGCAACGATGAATGCCGCACCCTGGAGCGCAATCGTCGCCTTGCCATTGGTCTCCAAATCCGCAACCCCGATCTGCCACAGAAGCTACTCACCAAATACTCCGATTTCATTCGAGGCTATGCCAAGAAGGACCCTGTCCTCGTGAAGAACATACACGACGCGCTCACTAATCTGGTGAAGCTGGCCAAGGAAAGCAAACAAAAGTCACGCAGTCATTCGTTCCCCACGATGAATCGCGAGAAGCGCCAGCTGGTCCATGAGATGTGCGAGATGTTTGGCGTGGAATCGGTCGCTTATGATGCAGAGCCGAATCGGAATGTTGTAGCTACTGCTTATAAGGAAAAGTCATGGCTTCCAGCTCAAAGTATAATGGAGGTGCTACAACGCGAAAGCGGACAACGACGCGTCCCGGTGCCAAGTAACAATGCGTGGGGCGTCAAGAGGTAA
- Protein Sequence
- MSDAFHRYHDAAGGSGGGGGNSNSSGPTTNNNYVNFNQFMMQHNIIGGGGGSAGGDGGGVEPVASSSTNPFHYNGGYGHQRYQIDDYYFNGGGGEGGGNNSGVYNYMPRFNYSNSTLHATAAEFIPRFSALSLTPASFGKSNDVAPADIQNANTTNGTNGPSTSRARAPDSPPNKSPPQRYTGTTPKGRESSSRGCAAAGASSSRRQNGRDYHRNQRYDNHRSNKRRDDWNRNRDRLNSFREEKFALENGKESPLNSPEKKSPKKPQPENEKLSQREKLIREIEARRLECLVCVEQIKSHNSVWSCHNCYHILHLSCIIKWASSSKSQDGWRCPACQNVEKDVPREYYCFCGKVKNPQFNRNDIAHSCGEVCGRIEGCSHACTLLCHPGPCPPCQANVTRECGCGKTTKTMQCYLKETIECDAKCLKLLNCELHECEEKCHDGKCKPCEQKVDQKCHCGKQDRQVACTRDSHDKKTYSCGKPCGRDLSCGNHKCKDCCHAGECRPCKMSPDQVTSCPCGKMPVVLEQRKSCLDPIPVCDGVCNKTLRCGRAAHPHHCTNKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPMPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPPCKRPCLRQHPCDHPVQHNCHSAANCPPCMMFTTQWCFGQHEQRKTIPCSQESFSCGLACNKPLICGRHKCIKPCHPGPCQSETGDVCKQSCSTLRAACGHKCMAPCHDGECPETACKEMVEVTCECGNRKQMRACHDFAREYRRIATAQLASSMAEVQRGNTVELSDILGPVKMNNNKALECNDECRTLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRGYAKKDPVLVKNIHDALTNLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKEKSWLPAQSIMEVLQRESGQRRVPVPSNNAWGVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542617;
- 90% Identity
- -
- 80% Identity
- -