Spip014279.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- -
- Assembly
- GCA_905187475.1
- Location
- LR994571.1:104925789-104927444[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00055 5.4 7.3 0.0 22 45 168 191 163 195 0.85 2 4 0.0013 13 6.2 0.0 21 44 195 218 192 223 0.90 3 4 0.0013 13 6.2 0.1 26 44 284 302 269 306 0.85 4 4 0.0018 18 5.7 0.0 21 45 307 331 304 337 0.90
Sequence Information
- Coding Sequence
- ATGCAACCAGGGGGAGTGGAACCACCACCAGCCATGTACCAATATCCCCCAATCAATGGTTATGATTCACAGCAGCCGTATTATCAGCAACAGAACACCGAAGAAAATCTTTACCATAGTGCCTATAATCAGTTCAGCACTAACGAAGAGATAGATCCCAATCAAAAGTACGAATATCATGAACCTGACGAGAATTTCATTTCTATAGATGACGCAAAGGTGCGAACGTTTCTTGTTGACTTGGTACAGAAGGAGAAGGAGAAAAAGGAAGAAGAAGAAGCGGAAGCTAGAATGAAACTAGACAGACATGATGAAGAGAAATCCGGCGAGGAGATTGAAGCTCTTGTAGACGCAATGGACGAGAGTGATGAGAGTTCGATGCATGATCTTGACTACGATGAGGATGGTGAAATATTTCTCTTGGACTCCGATGTTGATTACATCGATGAGAACGAGGAGGGTGTTGAGTTAAATTGGATTGATTTGGAACAAAAAGCTCAAAAGCAGACGATGGAATGTTTTCTCTGTGGAAAGAGTGTTGTATCCAGCTATAATCTGCGAAGACATATGATGATTCACACAGGTGAACGCCCCTACGGCTGTGACATGTGTTATAAACGCTTCCGAGAATTCAGTGACCTGAAAAAACACCGTCGTGTGCATTCAACTCAAATGAACTACAAGTGTATGGTGTGCCGCGTTAATGATCCATCAACATATGACCCAACAAAATGTGTTGCATGCGATAAAAACTCTCCCGGCGATGATACACAGCAAATGGCGGACTTACTGCTGGACAGTGTGCCGAATATTGCTACACCTACATCAGCCGGAGGTAAAAAACAATTTCCATGCCCTATGTGCAATCGTATTTTTGGAACGCGACACAATCTTAAACGACACTTTATGATACACACCGGTGAGAAGCCATTCAGTTGCAGCATCTGCCAAAAACCATTCCGGGAGGTGTCCACCTTAAAGAAGCATATGCATACACACACCAAAGTGAAGGTATACAAGTGCGGCCACTGTCAAGAGAGATTTACCGACTACGATTCATATGTGGAGCACAAGGATACGCATCCAAAGAAAGCTACACCAGTTAAACGGACGAAACGAGGCCTTAAAGGTCACGTGATACCGAGCAAACGACGGCGTAGCGATACAGAGTCAGCAGCAGCTGATGATGAGGAAGAGTTCGAGTGTCCTGAGTGTGGAGAAAAATCAGCATCCATTGAGCTATACGCAGATCACATTAAGCAACATGACTCCTCAGTTGAATTCCAGTGTTATATATGCAAGCAAATGTTTGAGTCTCGAGATTTGTTGGTGTCACACTTCTCGCTGCATGATGTTGACGATGAATCAAGTGCGGATGGTTAA
- Protein Sequence
- MQPGGVEPPPAMYQYPPINGYDSQQPYYQQQNTEENLYHSAYNQFSTNEEIDPNQKYEYHEPDENFISIDDAKVRTFLVDLVQKEKEKKEEEEAEARMKLDRHDEEKSGEEIEALVDAMDESDESSMHDLDYDEDGEIFLLDSDVDYIDENEEGVELNWIDLEQKAQKQTMECFLCGKSVVSSYNLRRHMMIHTGERPYGCDMCYKRFREFSDLKKHRRVHSTQMNYKCMVCRVNDPSTYDPTKCVACDKNSPGDDTQQMADLLLDSVPNIATPTSAGGKKQFPCPMCNRIFGTRHNLKRHFMIHTGEKPFSCSICQKPFREVSTLKKHMHTHTKVKVYKCGHCQERFTDYDSYVEHKDTHPKKATPVKRTKRGLKGHVIPSKRRRSDTESAAADDEEEFECPECGEKSASIELYADHIKQHDSSVEFQCYICKQMFESRDLLVSHFSLHDVDDESSADG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01541692;
- 90% Identity
- iTF_01396033;
- 80% Identity
- iTF_01396033;