Spip018964.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- -
- Assembly
- GCA_905187475.1
- Location
- LR994572.1:76040045-76041451[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00015 1.5 9.1 0.1 21 52 182 213 169 215 0.82 2 9 0.0012 12 6.2 0.0 21 50 210 238 206 240 0.83 3 9 3.4e-05 0.33 11.2 0.2 21 47 265 291 254 296 0.84 4 9 0.0016 16 5.9 0.1 21 44 293 316 290 324 0.89 5 9 0.12 1.2e+03 -0.1 0.1 21 44 321 344 316 349 0.71 6 9 0.00028 2.8 8.3 0.1 18 46 346 374 341 381 0.85 7 9 0.19 1.8e+03 -0.8 0.0 21 46 377 402 373 408 0.75 8 9 0.0014 14 6.1 0.1 23 44 407 428 401 433 0.89 9 9 0.011 1.1e+02 3.2 0.2 21 45 433 457 430 463 0.88
Sequence Information
- Coding Sequence
- ATGGCTGGCCAGATAGCACAGATCGAGTTCGCAGATACGGTCAACGAAGCCTCCGATTCGCCGGATGACGACGAAGGCGTCACGTCTGACGTGAGTGGAGCACTACCGACGGAAGACATGATCAAAGAGGAGCCAGAGTTCATCATCGGCGCTGATGTCGAGCAGGAGGAGAAGAAAATCCGTGCGTTTTTCAACAAGATTCATGTCGATGAGGAGGAGCGTAAGCAACTCAACTGGTTAACGTGTATGCTGTGCGAAGAGCGTTTTCTATCGACCAAAGATCTGTCGCTGCACGTGCAGGAACACACCAAGAACGAGCGACAGCCAAAGCCGAGACCCCCGGAGGAACTGACCAACCGGCGGGCACCAAAGACCCAGTTCAGGGGATTCACACGGCAAGAGCTATTCCAGGACTACCTCAACATCAGCGTGGAGCTAGATGGAAAGCCCACGTACACGTGCAAGCTGTGCCCGAATAAGATTTTCGCCCGCCAGGTGTCCATACGGAACCACATGCGAATCCACGAGAAACCCACGCACACCAACGAGCGAAAGTACGAGTGCAACATCTGCGACGCAGTCTTTACACGTTCCAGCTCACTGGCGTCGCACCTACGCGTCCATAGCGGTGAGAAGCCATTCGTGTGCGCGATCTGCGGGAAGACCTTCCGCGAGTCGGGCCAGCTCAGCGCCCACAACAAGACTCACTTCGACAAGATTCTCGAGTGTCCGCGATGCGACAAGAAGTTCATCTCGAACACAACTCTTCGCATCCACTGTCGCACGCACACCGACGAGCGACCGTATGCGTGCACATTTTGCCCGAAGATGTTCCGCTCTAGCACGAACCTAAGGATACATGTCCGAGTGCACACCGGCGAGAAGCCGTACAAGTGCGAGATCTGCTCGTACGCCACCAAGCAGTCGGGATACCTGCAGGCCCACATGCGGTCGCACACCGGCGAGCGTCCGTACAAATGTACGCTCTGCGAAAATGCTTTCTCGGAGAAGAAGCGTCTCGTGACTCACATGCGTCGCCACACGGGCGAGCGTCCATACAAGTGCGTCTATTGCGACGCGGCGTTCATACGGAGCGACAACCTGAAGTACCATCTGCGGAAGCACACGGGTGAAAAGCCGTACGAGTGTGACGTGTGCGGGAAACGATTCGCACAAGGAACCACGCTCAGTATTCACCAAAAGATCCACACCGATGTTAAACCGTATAATTGTCCACAATGCTCGATGACGTTCAGGCAGAGTGGAGCGCTGGTCACCCATATGCTGACACACTCGGACGAACGGCCGTTCAAGTGCGAACACTGCGAGAAGGAATACCGGCAAAAAGCGCTGCTGAAGCGTCATGTTGCCAATGTTCACGACCGACGTAAAGCTCCATCGACTTAA
- Protein Sequence
- MAGQIAQIEFADTVNEASDSPDDDEGVTSDVSGALPTEDMIKEEPEFIIGADVEQEEKKIRAFFNKIHVDEEERKQLNWLTCMLCEERFLSTKDLSLHVQEHTKNERQPKPRPPEELTNRRAPKTQFRGFTRQELFQDYLNISVELDGKPTYTCKLCPNKIFARQVSIRNHMRIHEKPTHTNERKYECNICDAVFTRSSSLASHLRVHSGEKPFVCAICGKTFRESGQLSAHNKTHFDKILECPRCDKKFISNTTLRIHCRTHTDERPYACTFCPKMFRSSTNLRIHVRVHTGEKPYKCEICSYATKQSGYLQAHMRSHTGERPYKCTLCENAFSEKKRLVTHMRRHTGERPYKCVYCDAAFIRSDNLKYHLRKHTGEKPYECDVCGKRFAQGTTLSIHQKIHTDVKPYNCPQCSMTFRQSGALVTHMLTHSDERPFKCEHCEKEYRQKALLKRHVANVHDRRKAPST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395954;
- 90% Identity
- iTF_01395954;
- 80% Identity
- iTF_01395954;