Basic Information

Insect: Syritta pipiens
Gene Symbol: RREB1
Assembly: GCA_905187475.1
Location: LR994571.1:8813798-8819595[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.025 2.6 8.8 0.8 1 21 237 257 237 259 0.93

2 14 0.00023 0.025 15.2 0.2 1 23 269 291 269 291 0.98

3 14 6.7e-06 0.0007 20.0 5.2 1 23 297 319 297 319 0.98

4 14 0.18 19 6.1 5.9 2 19 528 545 528 551 0.95

5 14 2.8 2.9e+02 2.4 0.6 1 19 590 608 590 610 0.78

6 14 0.0062 0.65 10.7 0.1 1 23 761 783 761 783 0.97

7 14 0.00013 0.013 16.0 1.7 1 23 792 814 792 814 0.99

8 14 0.00032 0.034 14.7 2.0 1 23 820 843 820 843 0.97

9 14 0.00066 0.07 13.8 2.1 1 23 1187 1210 1187 1210 0.95

10 14 6e-05 0.0063 17.0 0.3 2 23 1514 1535 1513 1535 0.97

11 14 0.1 11 6.9 6.3 1 23 1541 1564 1541 1564 0.97

12 14 1.4 1.5e+02 3.3 6.3 1 23 1666 1688 1666 1689 0.95

13 14 0.0058 0.62 10.8 0.5 3 23 1738 1758 1736 1758 0.96

14 14 0.00097 0.1 13.2 4.8 1 23 1764 1786 1764 1786 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.025	2.6	8.8	0.8	1	21	237	257	237	259	0.93
2	14	0.00023	0.025	15.2	0.2	1	23	269	291	269	291	0.98
3	14	6.7e-06	0.0007	20.0	5.2	1	23	297	319	297	319	0.98
4	14	0.18	19	6.1	5.9	2	19	528	545	528	551	0.95
5	14	2.8	2.9e+02	2.4	0.6	1	19	590	608	590	610	0.78
6	14	0.0062	0.65	10.7	0.1	1	23	761	783	761	783	0.97
7	14	0.00013	0.013	16.0	1.7	1	23	792	814	792	814	0.99
8	14	0.00032	0.034	14.7	2.0	1	23	820	843	820	843	0.97
9	14	0.00066	0.07	13.8	2.1	1	23	1187	1210	1187	1210	0.95
10	14	6e-05	0.0063	17.0	0.3	2	23	1514	1535	1513	1535	0.97
11	14	0.1	11	6.9	6.3	1	23	1541	1564	1541	1564	0.97
12	14	1.4	1.5e+02	3.3	6.3	1	23	1666	1688	1666	1689	0.95
13	14	0.0058	0.62	10.8	0.5	3	23	1738	1758	1736	1758	0.96
14	14	0.00097	0.1	13.2	4.8	1	23	1764	1786	1764	1786	0.99

Sequence Information

Coding Sequence: ATGTTGAAAACATCAATGAAAAAGCAATTAACAGACATTTCACGAAAAATGGATCGAAGGGAATCGACGACATCGGAGTCATCTGTTGAGCCCATGGACTTGGGACGGACTCCTATGAAAATGAGTACAGACATAAAGAAAGAAAGCAGTAGTACAACAGCAACATTGCAACTTTCAACGCCAACACATAAAGATGCCATTTTATCAGATGCCAATACAAAACTCCCCATACGTCATGAGTCTGATGCCGATGAGTCAGATGAAAGAGATCGAGATCATCAAAGACGATCTCACAGTCAACATCACTACCACCATCGTCGGCGTGGTAACAGTGGTCGCGATAAGCGAACCGTCCACTTAGAGTGCACCGACAGCCCGCATTCATTGCGAAAAAGATTTCGAATTAGCAGTAACCAAAACGCTCCAGAACCTGTGAGCAATCTCAAACAGAAAATATCGAACAACGACTCTACGACATCGGCAAAGTCGATGTCAACAAATGTAACCGCAACAACGAACAACAATGAATCTGGCTTTGTCGACGCGAGCAGTAGCCACGTTCTGAACACATCCGGCTCATCGGCGACATCATCCGCATCCTCATCCTCGTCGCCGACATCATCATCATCAGCCTCACCATCCGCCAGTAATATCGCGTCGGTCGTCTCCAGCCCCGAGTCGGGCATGGGCGAACGTGACGACATGAAGTACCTTTGCCCAATTTGTGAGGTGGTATCGGCGACGCCACATGAATTTACCAATCACATTCGATGTCATAATTATTCATCTGGGGACACCGAAAATTTCACCTGCCGCATTTGCTCTAAGGTTCTTTCATCTGCGTCCTCGCTGGATCGGCATGTTCTGGTGCACACTGGCGAGCGGCCCTTTAACTGCAAATATTGCCAACTAACATTCACCACAAATGGGAATATGCATCGCCACATGCGAACCCACAAGCAACATCAACAGCACTATCATCGGAATTCAAATGGGACGAAGACTAGCAGTGGTGGTGGTGGCAGTGGCAGCAGTGGTGGTGGTTCTGGTGCTGGTGCAGGTAATAGTGGTGCCTCCAGTTTAATTCCTTCAATACCATCCGCCGACCAATCAGCTTCGGCTACAGCGACTGCAAACACAATACCCTCTAAAATCGCAAACGCTACTAACGGTGTTATTAATAGCAATGGTGACACAATTGCGAGTGGAGGTGGCGGCGAAAGCTACGAAAGTGATGGTGGTTGCTCAACGGATTCATCCAGTGGCATCAGTCAGAGCTCCAACAACAATAACAATAGCAATACCAACAACAAAAATATTAGCAACTTTAAGCGCAAGAGCACCGACAGCCTGGATGACATGGCCCTGATGAAACGACGCGTGAAGACTACTATCAACAACAACAACATCATCGATAATGTACACAACGAGAAGAGTACGATCGAAGAAGCTGATATTATCGATGCACTGAGACATCAACAGCAACAGAAATTATTTTGTCCAGTGTGTAATCGTAATGATTTTATGGGAATGCTAGCTCTGGTCACACACATGGACTGTGATCATTCAGATATTCCAGCAAAGTGTCGCCATTGTGATGTAGTTTTCAAGACCCATAAACAACTGAACGTCCACCCATGCACGAGTAAGCATAAAATTACTGGTTTCAAGGACCTAACATTTGTGGACTTCTCGAGTGAGAAGTTCCCCGTAATTGCGAAGTCCTTGTGTGAGCAGAGTCTTCGAACTCCAATTAGCAGTCAGAGATTTGAATGTACGAAGTGCTATAGAGCGTTCCCGTGTGCCAGTGCGGTTGAGATTCACGAGAAAGACTGCCTAGGGTCCGGCATGAATTTGTTTGTGGATACACCAGATTTTTCCTCCTCCCGTAAGCAACGAGCTTATAGTGAAAGCTCAGGTGGTGCTGATGACGACGATAACAGACGTGATGAGTTTTTCGCACGATTGTATTTGAAAAACAAATCCACTGCACAAAGTATGACAAGTTTATCGGCGTCATCACCTTCACTTTCCGACGTTAAATCATCCGAATTGGATAAGACACCTGTGAAAATGTCTCACTTAGAACAGTTCCAGGACTCAAAGGAGCTCGCCGATATTCAATCGATTTTGAACATAACCTCGTCGTCGTCAAATTTCCTGCGCAATTTTGAAAACTCAGTGAATGCGCCGATCAGCAACTATGGTGCTGAGAATGGCGAAGAAGAAGCCCAAGATGCATTTACTTCAGAGTTCCGCAAGATGAAGTTACGTGGGGAGTTCCCCTGCAAACTATGCACAGCGGTGTTTCCGAATTTACGTGCTCTCAAAGGACACAATCGCATTCACCTTAGTGCGGCGGGTCCAGGACCATACCGTTGTAACATGTGCACTTATTCGATTCACGACAAAGCGGCCCTGGTGCGTCATATGCGAACTCACAACGGCGATCGGCCTTATGAGTGTGCCATTTGCAACTACGCCTTCACGACAAAAGCGAATTGTGAACGTCACCTTCGCAATCGCCATTCTAAAACCACTCGTGACGATGTGAAAAGGGCAATTATATACCATCCGTCAGAGGATTCCAACTGCGACGATGCAATGAAGAAACTGCACATGTTCTCGTCACCTGAGTTCGATCAGGACGACTTAGAGCAACACCATCCGCCAAAGGATCGGTCAACCCCAGTGTCGCATTTAAAGGAAATGCTGCAAGCCGAATCGAAGCCGCTGAAAATCCAAGTGAAGAGCTTGGAAAAGTTGATCGATAAGCCATCTTTATCATTTAGCCACTCCGACGATGTTGAAAAGGAGCCGGAGTCTGCAGATTCTCAACAGGACAAGGGTATCCGACCAATGGACCTTAGCATGGATGCCTTAGACTTGAGTAAGAAATCAGTGAAGTCGACTAAGAATGAGGAGAAGCCACCTCAATCTCCAACCCCGTCACAACCAGCTACTGGACGTGTTTCAGCTGAGGAACAAAACATCGACATTAGACTCTTGGAAAAGAACCAAGAGCTTTTGCTTACCCAACAAAGATTGTTGCACGAAGCCATGCCCAAAATGGATCCCGCTCACTATATGCGATTGTCACAGCTCTATCAGAACTTAGTATTTCCGCTGCACCCGATTTTATTACAAAATGCGTTTTTCCCAAACACCGATTTAAACAAATTCCCGTCATTGGTGCGTCCGCTTTTCGAGCACGCTGCCAATTTAGATGCCGCTCCCTCATTGGCACTCAATAACTTAAACCAAAGTATGCAGCCAAAATCCGCCTCAGAAGAGACAAATTTGTTGATGAAGCAGTCCAGTTCACGTTCCCATTCTCCCAATCCTGCTAAGAGCCAACTGCTACCACGGAACTCTCCGCATCCGTCCGCATCGCAAATGCCACCGATGGCTCGTAACCATCCACACATGGTACCAGGGTCGCATTCCTCAGGAATGCTCCCCTCATCTGTGCCCAATTCAGGACCAGTCAAGATGGTCATCAAGAACGGAGTTCTTATGCCGAAACAAAAACAACGTCGCTATCGTACCGAACGGCCATTTGCATGTGAACATTGTTCAGCCCGCTTCACACTCCGATCCAATATGGAGCGCCACATAAAACAACAACATCCGCAATACTGGGCTCAACGTCAACGAAGTGGACACCACATAATGCGTGGGCGTGGCAACACGTCTGTGCTGTCGCATATGCAGACTCCGCACTCGCCTTTGGAAGTGAATCACCCGATTTCTAACAGTGGCATAATGACGAGCCACTTAAGTGCCATTTCCGATCAAGTGAAATACGCTATACTTGCACAGCAGCTCAAAGCCCGTAAGGATACAGATATTCTCCAACAGGCTCTGTCACAAGGCTCGAGCAGTGTGTTGGCACAAAATCCAACCACAACTGCTATAAGTAGCCTGCGCAAATCACTCAGTTCCTCGTCGAACACAAACAATGGCAGTATAGAGGATGATGATCCGAAATTGGTAATTGATGAAGATGAAGAGAAGGATGAAGATGAGGATGAAGACGAAGAAGATCGCAAACCTGAAAATCTAACAAAAATTCAAGACCTTCAAGCACAGACATCAAATGAAGCTGCCAAAAAAATGGCTGAATCTATTCTAGAACAGGCTATGAAAGCGTCCAGCACTAAAAACTCATACACCGCTAATTCGACCGAGGATGACCGTGCACTCGGCAAGGACTTCGGTCTTAAACTGTCAAAAAACATGATTGCTCAAGCCGAATTTGTGGGAAAATCTCTCAAAGAAGTGGCCAGTTCTCCATTCAAGGATGAGTCTAATGATCTCGTTTCGGTCTCCAGGCTGGTTGACAACGCCACAAATTCAATGTCGTTCAACAACTATTTTCGGCCCAGTGACGTTGTGAATCAATTGGAACAAAGCGATGAGGAGGGCTTAGTCGCATCAGGCAGCGCATCGGAAAGTAACAACTCAGGCCCAGAAGACATGGCTGGATCACAAGAGCCGAAAAAGAAGTCCGCTTACAGCTCAGCTCCGAACCGTGTGTCATGTCCATATTGCCAGCGTATGTTCCCTTGGTCAAGCTCTCTGAGGCGTCACATTCTAACCCACACTGGCCAAAAACCGTTCAAATGCTCCCATTGCCCATTGCTTTTCACCACCAAAAGCAACTGTGACCGTCATCTGTTGCGCAAGCATGGAAATGTCGAGTCAGCTGTGTCCTTGTACGTCCCTATCGAAGATGTCAATGAACCCCTGCCAGTGCCGAAATCTGTTGAGGAAATCGAGCTTCAGCAACAGCAGCAGATGCTACAGCAACAGCAACAAAAAAAGATGAAAGAGCAAAGGGAACTAGAGAAAATCCAACCGCCTCAGCCGCAAAAGCAACCATCACCAGAAACCCAAGAGCCAGTAATTAACCGAAGCTCAACACCACCCACCCTTAACTCGGTTTGCAAAGTCGAGCCAGTCCCACAAATTGTTTCTTCGTCTGAGTTGCCTTTCAAGTGCCACCTTTGTGACAATTCATTCGCAGAAAGATTTCAGTGTCTCGATCACATTAAGATCCATCATGCTCAAGAATTCGCCTTGCTGCTGTCGAAGGGGGCCATTGACAATGAAGCCGACGCCAATAGCCAAGTACAGTCCACTGAAGACGACGAGAAACGCGATGAAAGTCGTGGCAAATACCCCGACTACACAAACCGGAAAGTGATTTGTGCCTTCTGCGTGCGACGTTTCTGGTCTACAGAGGACTTGCGCCGGCACATGCGAACCCACTCTGGCGAACGTCCGTTCCAGTGCGATATCTGCCTGCGCAAGTTCACCTTGAAGCACAGCATGCTCCGTCACATGAAGAAGCACAGCGGTGGCGGCCACTCGAGTAATGGTGCTGCGAACGCCGGCAACAGCGGTTCAGACATATCCGACGATGAGCAGCCGCCTTCCAGCGTGACGCTTGCCACCTCCTTACGCTCTCATAAGATCCAAGAGCTCTTTTCTAAGGCCACCAGTGAGTGGCGTAACAACCGCCTATCTGGCGAGCACAAGGAGAACATTGAAGAGCACAACAACCAGTCCGACCTAATTGGAAACCTGCTAGGCATCAGCGACCAAGGCATCTTAAATAAGCTTCTCTCATCGGCAGACGAAGCGGCCAAGTTTCTGGGCGTCGAGAAATAA
Protein Sequence: MLKTSMKKQLTDISRKMDRRESTTSESSVEPMDLGRTPMKMSTDIKKESSSTTATLQLSTPTHKDAILSDANTKLPIRHESDADESDERDRDHQRRSHSQHHYHHRRRGNSGRDKRTVHLECTDSPHSLRKRFRISSNQNAPEPVSNLKQKISNNDSTTSAKSMSTNVTATTNNNESGFVDASSSHVLNTSGSSATSSASSSSSPTSSSSASPSASNIASVVSSPESGMGERDDMKYLCPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCQLTFTTNGNMHRHMRTHKQHQQHYHRNSNGTKTSSGGGGSGSSGGGSGAGAGNSGASSLIPSIPSADQSASATATANTIPSKIANATNGVINSNGDTIASGGGGESYESDGGCSTDSSSGISQSSNNNNNSNTNNKNISNFKRKSTDSLDDMALMKRRVKTTINNNNIIDNVHNEKSTIEEADIIDALRHQQQQKLFCPVCNRNDFMGMLALVTHMDCDHSDIPAKCRHCDVVFKTHKQLNVHPCTSKHKITGFKDLTFVDFSSEKFPVIAKSLCEQSLRTPISSQRFECTKCYRAFPCASAVEIHEKDCLGSGMNLFVDTPDFSSSRKQRAYSESSGGADDDDNRRDEFFARLYLKNKSTAQSMTSLSASSPSLSDVKSSELDKTPVKMSHLEQFQDSKELADIQSILNITSSSSNFLRNFENSVNAPISNYGAENGEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAAGPGPYRCNMCTYSIHDKAALVRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHSKTTRDDVKRAIIYHPSEDSNCDDAMKKLHMFSSPEFDQDDLEQHHPPKDRSTPVSHLKEMLQAESKPLKIQVKSLEKLIDKPSLSFSHSDDVEKEPESADSQQDKGIRPMDLSMDALDLSKKSVKSTKNEEKPPQSPTPSQPATGRVSAEEQNIDIRLLEKNQELLLTQQRLLHEAMPKMDPAHYMRLSQLYQNLVFPLHPILLQNAFFPNTDLNKFPSLVRPLFEHAANLDAAPSLALNNLNQSMQPKSASEETNLLMKQSSSRSHSPNPAKSQLLPRNSPHPSASQMPPMARNHPHMVPGSHSSGMLPSSVPNSGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWAQRQRSGHHIMRGRGNTSVLSHMQTPHSPLEVNHPISNSGIMTSHLSAISDQVKYAILAQQLKARKDTDILQQALSQGSSSVLAQNPTTTAISSLRKSLSSSSNTNNGSIEDDDPKLVIDEDEEKDEDEDEDEEDRKPENLTKIQDLQAQTSNEAAKKMAESILEQAMKASSTKNSYTANSTEDDRALGKDFGLKLSKNMIAQAEFVGKSLKEVASSPFKDESNDLVSVSRLVDNATNSMSFNNYFRPSDVVNQLEQSDEEGLVASGSASESNNSGPEDMAGSQEPKKKSAYSSAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDVNEPLPVPKSVEEIELQQQQQMLQQQQQKKMKEQRELEKIQPPQPQKQPSPETQEPVINRSSTPPTLNSVCKVEPVPQIVSSSELPFKCHLCDNSFAERFQCLDHIKIHHAQEFALLLSKGAIDNEADANSQVQSTEDDEKRDESRGKYPDYTNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGGGHSSNGAANAGNSGSDISDDEQPPSSVTLATSLRSHKIQELFSKATSEWRNNRLSGEHKENIEEHNNQSDLIGNLLGISDQGILNKLLSSADEAAKFLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223735;
90% Identity: -
80% Identity: -