Spip012709.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Syritta pipiens
Gene Symbol
-
Assembly
GCA_905187475.1
Location
LR994571.1:79421222-79426314[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.3e-05 0.0025 18.3 2.1 1 23 270 292 270 292 0.96
2 18 6.1e-06 0.00064 20.2 0.4 1 23 298 320 298 320 0.97
3 18 1.2e-05 0.0012 19.3 0.5 1 23 326 348 326 348 0.98
4 18 9.9e-06 0.001 19.5 3.1 1 23 354 376 354 376 0.97
5 18 2.3e-05 0.0024 18.4 4.7 1 23 382 404 382 404 0.99
6 18 5e-05 0.0053 17.3 6.1 1 23 410 432 410 432 0.97
7 18 1.1e-07 1.2e-05 25.6 4.3 1 23 438 460 438 460 0.98
8 18 7.3e-08 7.6e-06 26.2 2.4 1 23 466 488 466 488 0.97
9 18 9.7e-05 0.01 16.4 5.7 1 23 494 516 494 516 0.97
10 18 1.2e-05 0.0013 19.2 6.5 1 23 522 544 522 544 0.98
11 18 2.1e-06 0.00022 21.6 4.5 1 23 550 572 550 572 0.98
12 18 4.8e-06 0.0005 20.5 8.1 1 23 578 600 578 600 0.98
13 18 1.2e-06 0.00012 22.4 7.9 1 23 606 628 606 628 0.98
14 18 4.3e-07 4.6e-05 23.8 7.7 1 23 634 656 634 656 0.98
15 18 0.00014 0.014 15.9 9.5 1 23 662 685 662 685 0.95
16 18 0.00011 0.012 16.2 0.5 1 23 691 713 691 713 0.97
17 18 0.00051 0.054 14.1 4.4 1 23 723 745 723 745 0.98
18 18 4.2e-06 0.00045 20.7 1.7 1 23 751 774 751 774 0.96

Sequence Information

Coding Sequence
ATGATAACAAATGCTTCAATGAATCAACAGCAGCTTCCGAACGGCACTATTATTTCAGCGCCACGTCATCCGGATTCCTTACATGTCCATGGAACGATGTCCTCCGATGATAATCGACACGTCTCACGCGGTATGCAAGACATAAAGGAGGAGAAACCTTTCGCAAATGGCAAACAAAACAATCACATGGCTCACGGTAATCCAGCATCTTCCGTATCATCGAAAATGAATTCTGGCAGTGGTGGCAACAATGCGCAATCTGCCGAACCAAGTGGTGGTGGTGGTAGCGGACAAATGGTTAACAAATTACAGGGGGGCGGAGGTCCCGGTGGATCGGGTGGCGGCGGTGGTGGAGGTAGTGAACAGCAAGAGCTAAGCGGTAAACAACCGCCGCATGGTGTTGAAATGTACAAAGTCAATATTGAAGATTTGAGTCAATTTCTATCATATCACGAGGTCTTCGGCAAGATCCATGGCGAAATAAATCAACAGCAAATATCATCGCACACGGTAACGCATCCTACTACGAATGTATCAACCTCAAATGCTGGTGGCAATACCTCTGTTAGTGGTAGTGTCACCGGTTCACTACCTCCACCCCCGCCACCATCGACAAATGGCAATTCGATAGTGACAACAAATAGCCTTACCAGTTCAGGGACAGGTGCACAAGCAGCCCCTCCACCGGGTGGTGGACCGTCTGCCCCAGGTGATCTGATACTGCCTAAAATGGAAAACCAAGGGATGGGTGTAGATCAGAATACTCCGCTGCTGGCACCCGATGGAACGCCCATCATGGGTGGCACCCATATTTGTGACATTTGTGGCAAAATGTTTCAATTTCGTTATCAACTTATTGTTCACCGTCGCTATCACAGCGAACGTAAGCCATTTAATTGCCAAGTATGCGGCCAGGGATTCACAACGTCACAAGATCTCACCCGTCACGGTAAGATCCATATTGGCGGTCCAATGTTCACATGTGTCATTTGCTTCAATGTGTTCGCTAACAACGCCAGCCTGGAGCGGCATATGAAACGTCATTCAACAGACAAGCCATTCGCGTGCACCATATGCCAGAAGACATTTGCCCGCAAAGAGCACTTGGACAACCACTTTCGCAGTCATACTGGCGAGACGCCATTCCGTTGCCAGTATTGTGCGAAAACGTTTACGCGAAAGGAACACATGGTGAATCATGTGCGCAAGCATACCGGAGAGACGCCGCATCGTTGCGATATTTGTAAGAAATCTTTTACGCGGAAAGAGCACTATCTAAACCATTACATGTGGCATACAGGTCAGACACCGCATCAATGCGATATATGTGGGAAGAAGTACACAAGGAAGGAACACCTAGCCAATCATATGCGATCCCATACGAACGATACACCATTCCGGTGTGAGATATGTGGAAAGAGTTTTAGCAGAAAGGAACACTTTACCAATCACATTTTATGGCACACAGGAGAAACCCCTCATCGCTGTGATTTCTGTGCGAAGACGTTCACCAGGAAGGAGCACCTATTGAATCATGTCCGCCAACATACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACACCTAGTGAATCACATTCGTCAACACACAGGCGAGACCCCCTTCAAGTGCACCTACTGTACCAAGGCGTTTACAAGAAAGGATCACATGGTTAACCATATCCGTCAACATACCGGAGAATCACCGCATAAATGCACCTACTGCACGAAAACCTTCACGAGGAAAGAACATCTGACCAATCATGTGCGCCAACATACGGGTGAGTCGCCTCATCGTTGCACCTACTGCAAAAAAACATTTACACGCAAGGAACACCTAACAAATCACATCCGGTTGCATACAGGCGATTCGCCCCACAAATGCGAATACTGCCAAAAGACGTTTACACGCAAGGAACACTTGAACAACCACATGCGGCAGCATTCGAGTGACAACCCACACTGCTGTAATGTGTGTAACAAACCGTTCACACGCAAGGAACATTTGATCAATCATATGTCACGTTGTCATACTGGTGATCGACCGTTCGCCTGTGAGACATGTGGTAAAAGTTTCCCATTAAAAGGCAACTTACTCTTCCATCAACGTAGTCACACCAAGGGTCAAGAGTGTGAACGTCCATTTTCGTGTGAGAAATGTCCGAAGAACTTCATATGCAAAGGTCATCTGGTGTCGCATATGCGTTCGCATTCAGGTGAAAAACCACATGCGTGCACTATGTGTAGTAAGGCATTCGTTGAGAGAGGGAATCTCAAGCGTCATATGAAAATGAATCATCCAGATGCAGTAATGCCGCCACCTCCGACACCAATTCCGGGTATATTGACGCAAATAAAACAGGAGATCAATCCGATAATAATTCCTCATCAACCTCCGACGATGCACACAATTCAACAAATCACTTCAACTGCAGGCAGCTCAAGTGCAAACAATCCAGGAAATCCAGCACTCCTGGCGCCGGCGATAGCTCGTGCTGCTATGCAACTGCAACATTTGCCCACGAACGTTGAACAACATCCCGTGGTTTACTAG
Protein Sequence
MITNASMNQQQLPNGTIISAPRHPDSLHVHGTMSSDDNRHVSRGMQDIKEEKPFANGKQNNHMAHGNPASSVSSKMNSGSGGNNAQSAEPSGGGGSGQMVNKLQGGGGPGGSGGGGGGGSEQQELSGKQPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEINQQQISSHTVTHPTTNVSTSNAGGNTSVSGSVTGSLPPPPPPSTNGNSIVTTNSLTSSGTGAQAAPPPGGGPSAPGDLILPKMENQGMGVDQNTPLLAPDGTPIMGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYLNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPIPGILTQIKQEINPIIIPHQPPTMHTIQQITSTAGSSSANNPGNPALLAPAIARAAMQLQHLPTNVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01318419;
90% Identity
iTF_00672970;
80% Identity
-