Spyr029168.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaeva pyrastri
Gene Symbol
-
Assembly
GCA_905146935.1
Location
LR989928.1:56583516-56587103[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.8e-05 0.0036 18.5 2.1 1 23 200 222 200 222 0.96
2 18 7.2e-06 0.00094 20.3 0.4 1 23 228 250 228 250 0.97
3 18 1.4e-05 0.0018 19.4 0.5 1 23 256 278 256 278 0.98
4 18 1.2e-05 0.0015 19.7 3.1 1 23 284 306 284 306 0.97
5 18 2.7e-05 0.0035 18.5 4.7 1 23 312 334 312 334 0.99
6 18 4.9e-05 0.0064 17.7 5.7 1 23 340 362 340 362 0.97
7 18 1.4e-07 1.8e-05 25.8 4.3 1 23 368 390 368 390 0.98
8 18 8.6e-08 1.1e-05 26.4 2.4 1 23 396 418 396 418 0.97
9 18 0.00012 0.015 16.5 5.7 1 23 424 446 424 446 0.97
10 18 1.4e-05 0.0019 19.4 6.5 1 23 452 474 452 474 0.98
11 18 2.4e-06 0.00032 21.8 4.5 1 23 480 502 480 502 0.98
12 18 5.7e-06 0.00074 20.7 8.1 1 23 508 530 508 530 0.98
13 18 1.4e-06 0.00018 22.6 7.9 1 23 536 558 536 558 0.98
14 18 5.2e-07 6.7e-05 23.9 7.7 1 23 564 586 564 586 0.98
15 18 0.00016 0.021 16.1 9.5 1 23 592 615 592 615 0.95
16 18 0.00014 0.018 16.3 0.5 1 23 621 643 621 643 0.97
17 18 0.00061 0.079 14.3 4.4 1 23 653 675 653 675 0.98
18 18 5e-06 0.00065 20.8 1.7 1 23 681 704 681 704 0.96

Sequence Information

Coding Sequence
ATGGCACATGTGAATCCAGCTTCTTCCATTTCGTCAAAGATGAATTCTGGCAGTGGTGGAAACGGTGGAAACAATGGCCAATCAACCGAACCCGGTGGTAGTCAAATGAACAAACTACAATCTGGTTCTGGTACTGGTACCGGTAGTAGTGGAGGAGGTAATGAACAAGAAAGCAAACCGCCTCACGGTGTTGAAATGTATAAAGTAAATATTGAAGACTTGAGTCAATTTTTATCATATCACGAAGTCTTTGGCAAAATCCATGGTGAAGTAATAAATCAACAGCAAATATCGCACACGGTAACTCATCCTACTACGAATGTATCGACTTCAAATGCTGGCGGAAACACATCAGTGAGTGGTTCTGTTTCCGGTTCACTACCTCCACCACCGTCGACTAATGGAAACTCGATAGTGTCGACCAATAGCCTAACCAGTTCAGGAACTGGTTCTCAAACGGTTCCACCGACAGGTTCCGCTGGTGTATCTACTGCACCTGGGGAACTTATTTTACCGAAAATGGAAAATCAAGGGATGGGTGTTGACCAGAACACCCCTCTGCTTGCTCCAGACGGAACGCCAATCATGGGCGGAACGCATATTTGTGACATTTGCGGAAAAATGTTCCAATTTCGTTATCAGTTGATTGTGCATCGTCGTTATCATAGTGAAAGAAAGCCATTCAATTGTCAAGTTTGCGGACAGGGATTCACCACATCGCAAGATCTCACACGGCATGGTAAGATTCACATTGGTGGACCAATGTTCACGTGTGTGATTTGCTTCAATGTGTTTGCCAATAATGCCAGCTTGGAGCGGCACATGAAACGCCATTCGACGGACAAACCTTTTGCGTGTACCATATGCCAAAAGACGTTTGCCCGCAAAGAGCACTTAGATAACCACTTTCGTAGCCATACTGGTGAAACGCCGTTCCGTTGCCAGTATTGTGCAAAAACATTTACACGAAAAGAACACATGGTGAATCATGTTCGCAAACATACTGGTGAGACGCCACATCGTTGCGATATCTGTAAGAAATCTTTTACGAGGAAAGAACACTATGTTAATCATTACATGTGGCACACAGGTCAAACACCTCATCAGTGCGATATATGTGGCAAGAAATATACGAGGAAAGAACACCTAGCCAATCATATGCGATCACATACGAATGATACTCCATTTCGATGTGAAATTTGTGGAAAGAGTTTTAGCAGAAAGGAACATTTTACTAACCACATATTATGGCATACAGGAGAAACCCCTCATCGCTGTGATTTCTGTGCGAAGACGTTCACGAGGAAGGAGCACCTATTGAACCATGTCCGACAACATACGGGTGAGTCACCACATCGCTGCACCTATTGCTTGAAGACCTTCACTCGTAAGGAACATCTAGTGAATCACATTCGTCAACACACAGGCGAAACACCCTTCAAGTGCACCTACTGTACCAAGGCTTTCACACGGAAGGATCATATGGTAAATCACATCCGTCAACACACTGGAGAATCACCGCATAAATGCACCTATTGCACGAAAACGTTCACTCGGAAAGAGCATCTGACCAATCATGTGCGTCAACATACGGGTGAGTCGCCACATCGTTGCACTTACTGCAAAAAAACCTTTACACGCAAGGAACATCTTACCAATCACATCCGGTTGCATACAGGCGATTCGCCTCACAAATGCGAATACTGCCAAAAGACGTTCACACGTAAGGAACATTTGAACAATCATATGCGGCAGCATTCGAGTGACAATCCGCACTGCTGCAATGTGTGCAACAAGCCATTTACTCGCAAAGAACATCTGATTAATCATATGTCGCGTTGTCATACTGGTGATCGACCATTTGCTTGCGAGACATGTGGCAAGAGTTTTCCTCTCAAAGGTAATTTGCTCTTCCATCAACGTAGCCACACCAAAGGCCAAGAGTGTGAACGTCCATTTTCTTGCGAGAAGTGCCCGAAAAATTTCATTTGTAAAGGTCATTTGGTCTCGCATATGCGGTCCCATTCAGGAGAAAAGCCGCACGCCTGTACTATGTGCAGCAAGGCTTTTGTTGAGAGAGGAAATCTGAAGCGTCACATGAAGATGAATCATCCGGATGCTGTTATGCCACCACCTCCAACACCTTTACCCGGGCTTCTGACGCAAATCAAACAGGAAATAAAACCAATTATAATTCCTCATCAACCCCCAACAATGCATACGATACAACAAATCACTTCAACTGCAGGCAGCACAAGTGCAAATAATCCTGGAAATCCCGCCCTTATAGCTCCTGAACAACATCCAGTGGTGTATTAA
Protein Sequence
MAHVNPASSISSKMNSGSGGNGGNNGQSTEPGGSQMNKLQSGSGTGTGSSGGGNEQESKPPHGVEMYKVNIEDLSQFLSYHEVFGKIHGEVINQQQISHTVTHPTTNVSTSNAGGNTSVSGSVSGSLPPPPSTNGNSIVSTNSLTSSGTGSQTVPPTGSAGVSTAPGELILPKMENQGMGVDQNTPLLAPDGTPIMGGTHICDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCVICFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTMCSKAFVERGNLKRHMKMNHPDAVMPPPPTPLPGLLTQIKQEIKPIIIPHQPPTMHTIQQITSTAGSTSANNPGNPALIAPEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00672970; iTF_01395951;
90% Identity
iTF_00672970;
80% Identity
-