Spip006147.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- egg
- Assembly
- GCA_905187475.1
- Location
- LR994573.1:40565497-40574358[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.25 9.7e+02 -0.4 0.0 32 42 45 55 37 62 0.81 2 2 3.3e-14 1.3e-10 40.9 0.1 6 75 1424 1486 1421 1488 0.89
Sequence Information
- Coding Sequence
- ATGAGTGTGGAGGATGAAGGTTCTTTTGACAGCCCTGAACCTGCCGAGGATGTCGGAGAGGACACCATGACCGATTTGCTTGAGAAGCCGCAGGTGATGTTGGAAGAGGACAGCAGGGAGTCCGAGGGCAGAGACGACATTTTCTACAGTCCCACAGGGGAAGCGAATCTCTCGGCGGAGGAGAATCTGACTCGAGGGGAAGACCCCAACTTGCAGGATTTGGTTGAGCTTGTGAGTGAAGAAGAGGACATCTTGGAAAAAATAGAAGAAATCGCGGAGGTTTCTACGCCGGCTCCGGCTTCGGTTGGTAGCGAAGTCGCTGCCGACACGGAGGACAGTGGTCTCTCGAAGGACGTGGGTGACGAGCGCGAAGGGACTCCATTGAATGATGAACCAGAGGAAGAGGTAACAATATCGGAAGTTGTGGAAGTCACAACTGTGGAAGGAGCAGAAGATGACAAATCTGCGTCAAAAAGTGATGAACTGGCGACAGAAAAGGACGTTGAAGCCGAAGGGGAAGTTGGGAAAAAATTGGATGGGGCATCTGCAGAGAAACTCGGAACATCCACACAGACTCTGGAAACGTCTACAGAGACTCGAGGAGCACCTAAAAAGACTTTGGGAGCATCACAAGAGGTCTCAAAACCTCTGAAGACGGTGGAAGATCTTTTGCTGGAGGACGGCTCCGTGAACGATGAAGAAGAGGACTCGAACCTTTCAAAGTCGGCGGAAGAACTTTTACTGGAGGAGACGCCAGAAGTGTCTCCAGAGATTCCAGAAATTGCAGAGGAGATTTTGCTGGAGGAGACCTTGGAAGAGGTTACGGAGGCAACAGGTGCAGAAGATATGCCGGTCCAGGAGAAATCGCTGGATGGGACGGTGGAGAAGGATGAAGAATTGCAAGCGATTGAAGAAGACGATTTGCTGGAAGAGAAGTCTCAGGAATTGTCGGAGGAGATCTCTTCGGAAGTGTCGGTGGAAAATTCTCTGATAGCGTTGGATGAAAAGTCTTTGGAGGAGAAGTCTCAGAAATTTTCGGTGGAAAAGTCTTCGAAAGAATCGAATGAAAACTCTTTGGAAGTGACGGAGGAGAAGACACGGGAGACGGCTAAGCAAAAACCATCGGAAGGATCCCTAGAAGAGGATGCACCACTTGAAAAGCGTGCAGAAGAAGTTTTGCTGGAAGGAGATTCATCGGAGGGAAATTCGATTGAAGATTCGGTGTCTAAGAAGGATGAGAAGGTGGCGAAATCTGTGGAAGCATCAGAGGAAAAGGTCTCAGACTCTTTGGAGACTACCCAACATGTTTCGCTTGAAGAGAATTTCTCGGAAAAGGCGCTCAAGACTGCAAAGGAACTCGCTGAGCCCTTAACGAGGATTGAAGCTGCAACAATTCCGTTAAAACCATCTGCGAAGAAACCAACTAAGACGTTGAAAGAATCGAAGACGTCGAAGGAATTGGAGACGGTGAAGGAATCGGTGACCTCTACGGACTCATCCGGGCAAAAGCTCTCAGAGCCACCGACTAAAGCCGATGACGTTGTGATGGAAAACTCGCCATCAACATCCCTGAAGAGAGGACCAAAACGGCCGAGGAGTGAAGAAGGTGATTTGTTGGAGAAAGACCATCCGGAGCCACCGCAGGAGAAGATTTTAAAGACCACGTCAGACGTGAAGACTTTCAACCCGTTTAAGACACTTGAAGAGGTTTTCATGGAAGAAGAACTTGAAGAGGAACGTCGAAAGGCTCAAGCGGCTGAGGAAGATGTGGGGGAAGATGAATCTCAGAAAGCGGATGCAGAGAAACAAGATCTAGATGATAAGGCGGAGGAAAAAAAGTGTACACAGACGGGTCCAGATGCCAGCACAGAAAAACAGGAGACAGTTCCAGAATCGAGTGTTTCTGCGGCAGAAAAGAAAAGCGACGGAGTCAAATCCAGTGAACTGCAAGAAACACAGAAAGCAGTTCAAGAAGAGACGACACAGTCTAAAGGTGAAGCGCCAAAGTTGGTTACAAAAGAGTCAGAGGGTTCCGAGGAAACATCCGAAGCTCCAGCAACGATCGAAAAGGTCGAAAAAACCAAAGCAGCAGGAGACGACCCAGTTAAGGTGTCAGAGATTGTCGAAGACGACAAAGCAGATGCTTCTTCCAGCCCGAAGCCAAACGAAAAGGACGATGAACTGGCTCCAAAAGCGATCACCAACGAGCCGGCAGAGGCTCCAACTCAAATAGTAAAGACCCTCGCTGGATCGTCAGTGTTCGGACCGGACATAGAGCCAATCCAGTTCAAAGAAAATGCAGAGAAACGTGTTCTCCCACAACCGTGCTGTTCGAAGGACATTGAGATGATGGAGACAGAAGTCACATCCAAGAAAGACTATCCACCACCTCCATCCAGTGCCGCCGCACCATCGCCAACCTCAGACGAAGAAGATTCACTCCTGGTCATCGATACCTCCCGCCGGGAAGAGGATTCCGAAGCAGAAAGAGCGGAAGCAGCGGCTCAGCAGAGTTCTTCCTCATCCTCTGCATCACCCACACCGTCGTCGAGCAGTGAGGAAGAGCTGGAAGTGTTTCACGGCAAGGAGTGCGTGAACTATGACTGCGATCAATCATCGGACGTGTACTTCCAGGCACCAGTGTTCGGTTTAAATTACTACAAAGTGGTGAGGAAGCGTAAGAAGGCGCAGTATCTCTGTGAGAATTGCTACGACAAAGCAATTGGGTCTTATGAGGACATGTGCAAGGTTCTGACGCAGAAGCAGCCGTTGCTGGAACGTGCGGACGTTGTACGGCAGGAGTTTGTTGAGATCATCGACAGCAGCGATGAGGAGGACAGCGACGACACTGAAGAGAGCTCGAAGGATGATAATGCCCTTCCCCGCGAAAGCATCGATCTGCTGTCAGCCGAACTCGAAACAGCGATTCGAAAAGTCATGAACTCGGTCGATATTCACAACCAACTGACGTGGACAAAACAGATCCTCTCACAGCGCCTCGACAACCTGACGGAAGAGGCAGATTCCGTGTCCGAGCGTCTGTTGGAGCTCCAAAAGAAAGCCGATCAAATGCACAACTCGCTCTATCAGTGTCCAAAGATCAAAATTCGTCAACTGACTCCTCTGGATCTCAACAGTGGGCGTACATTTCAATCAGAAACTGAAGACACGATCCCACCACATGGAGAGATTGTCCGAGCAGAAATACAAGTCAATGAGACTTATTATGCGGTGAAGAACAAAGCCATCGCCAGTTGGGTGCTGTGCAAGGTCACTGAGACGGTCGATAACGTCCCGAACATGGGAAACCTCAAACATTTCAAAGTCAAGTTCATCAAGTCCAAGTATCAGATGATGAAGACTGTGTCGGCCAAGCACATGGCGTACTTCAATCCTCCTGAAGTTCGGTTGCCAATTGGCACACGAGTGATTGCGTACTTTGATGCCACATCTCTGAGCAAGGGAAAGGATAAGGTCCTCATTCCGAGTGCCTTCTATCCCGGCATCATCGCCGAACCCCTCAAGGAGATGAACAAATTTAGGTACTTGGTGTTCTACGACGACGGTTACTTCCAGTATGTCTACCACAAGGATGTCCGATTGGTGTGTAACTCGTCCGAGAATGTCTGGGAGGATGTCCACCCTCAGTCTCGTGAATTCATGCGCGCCTATCTCACACAGTACACCGTGAGTCGACCGATGGTGTACACACAGAAAGGTCAGAGTATGCTCGTTGATTACATGGGCAAATGGATCTATTCTCGGGTGATCGACGTTGACTGCAGCTTGGTGCAGGTGCTCTTCGAAGCACAGCACCGTTCCGAGTGGATCTACAGAGGATCAGCTCGGTTGGGTCCAGTGTATAAGGAATACAATAACTTAGCTCCGAGAAACAATTGGAGTAGTTCTCGATCAGTGAGGGTAAGTCAACGCTCGGAGCCATACGTTCAGTATGTGAATTGTGACGATATCTTTCCAACTCCAAAGCCAGCGCCAGCGCCGCAACCGCCACCGCAGCAGAAACCAGGAGAGGTTCGCTCAGTGGCTAAAAAGAGCGTTAGTCGAGTTGATTCCGTTCCCAACACAACTCCTGTTCCAGCCGTGCGTCATTTGAATAATTCAACGATTTTCGTTGATGACGATAACAAACCCAAGGGCAAGGTGGTTTACTACACAGCCAGGAAGAATGCTCCACCCCGGAAATATGAGCCACATTTATGTAGTCCCACCTGCCAGTATCAGATTTCACATAATCTCCAATACTATAGTCCATTGGCCAAGCCACTGCTCTCTGGATGGGAGCGACAGATCATGCGGCAGAAGTCGAAGAGATTTATTGTTTATCGTGGTCCTTGCGGAAAGCGGTTGCGATGCATGGAGGAGCTTCACAGGTATCTTCGGCTCACCGAAAGTGAGCTGAATGTAGATAACTTTGACTTCGGTCCGGAGACAAATTGTCTGGCGGAGTACGTGATCGAGAGCTGCATCGTCCAGAAGAAGGACATTTCATATGGCCAGGAGCAAATGCCGATTCCATGCGTGAACTACTACGACAACACAATGCCGCCAGATTGTATCTACTCCAGCCGGCGGATTCCCACCGAGGGTGTTCCACTGAATTTGGACACGGAGTTCTTGGTCGGTTGCGACTGTGAGGATGATTGTTCGGACAAGTCCAAGTGCTCCTGTTGGGAGCTGACATACGCTGGCGCGAAGTACGGTATGCCGAATGTCCCCAACGAAATGGTTGGCTATCAATACAAGCGACTGTACGAACACGTGCCCACGGGAATTTATGAATGCAATTCGAGATGCAAATGCAAGGCGAACTGTGTGAATCGCGTGGTCCAGCAACCTCTTCAGTCCAAACTGCAAGTGTTCAAGACTTCAAATCGTGGATGGGGCTTGCGGTGTATAAACGACGTCCCGCGAGGAAGCTTCATCTGCATTTATGCGGGGCATCTGCTCACCGAGCAAAAGGCCAATGAGGGTGGTCTCGATGCTGGAGATGAGTACTTTGCTGAGTTGGATTACATTGAAGTGGCGGAGCAAATCAAGGAGGGCTATGAGTCCGATGTTGTTGAGCCAGATGAAGATGAGGACCTTTACAATCCAGACAAAGATGACGACGACGATGAGTTTGTTGGCCCTGGCGATTCCAGCCGTTCAAAATCATTCAACACCCGTTCGAGAACAAGAAAGTCAGCGAACGGCGACCACGTGTCTCAGGAGAGGCAGGTAATGAGCTTCGAACCGAACAAGACAATAGGCCAGCCAGACAATTCTAACTCAGAGAAACCAACAATTCGAAAACTCTTTGGTAAGGATGAGGCTTGCTACATCATGGATGCAAAAATCACAGGCAACTTGGGACGATACTTTAATCATTCCTGTTCACCAAATCTTTTCGTTCAGAATGTGTTCGTTGATACTCATGATTTACGTTTCCCTTGGGTCGCATTCTTTGCATTTACACACATTAGAGCTGGCACGGAATTAACATGGAATTACAATTATGAGGTGGGAGTTGTACCAGGAAAAGTCTTGTACTGTCAATGTGGAGCACCGAATTGCCGTCAGCGATTGCTTTAA
- Protein Sequence
- MSVEDEGSFDSPEPAEDVGEDTMTDLLEKPQVMLEEDSRESEGRDDIFYSPTGEANLSAEENLTRGEDPNLQDLVELVSEEEDILEKIEEIAEVSTPAPASVGSEVAADTEDSGLSKDVGDEREGTPLNDEPEEEVTISEVVEVTTVEGAEDDKSASKSDELATEKDVEAEGEVGKKLDGASAEKLGTSTQTLETSTETRGAPKKTLGASQEVSKPLKTVEDLLLEDGSVNDEEEDSNLSKSAEELLLEETPEVSPEIPEIAEEILLEETLEEVTEATGAEDMPVQEKSLDGTVEKDEELQAIEEDDLLEEKSQELSEEISSEVSVENSLIALDEKSLEEKSQKFSVEKSSKESNENSLEVTEEKTRETAKQKPSEGSLEEDAPLEKRAEEVLLEGDSSEGNSIEDSVSKKDEKVAKSVEASEEKVSDSLETTQHVSLEENFSEKALKTAKELAEPLTRIEAATIPLKPSAKKPTKTLKESKTSKELETVKESVTSTDSSGQKLSEPPTKADDVVMENSPSTSLKRGPKRPRSEEGDLLEKDHPEPPQEKILKTTSDVKTFNPFKTLEEVFMEEELEEERRKAQAAEEDVGEDESQKADAEKQDLDDKAEEKKCTQTGPDASTEKQETVPESSVSAAEKKSDGVKSSELQETQKAVQEETTQSKGEAPKLVTKESEGSEETSEAPATIEKVEKTKAAGDDPVKVSEIVEDDKADASSSPKPNEKDDELAPKAITNEPAEAPTQIVKTLAGSSVFGPDIEPIQFKENAEKRVLPQPCCSKDIEMMETEVTSKKDYPPPPSSAAAPSPTSDEEDSLLVIDTSRREEDSEAERAEAAAQQSSSSSSASPTPSSSSEEELEVFHGKECVNYDCDQSSDVYFQAPVFGLNYYKVVRKRKKAQYLCENCYDKAIGSYEDMCKVLTQKQPLLERADVVRQEFVEIIDSSDEEDSDDTEESSKDDNALPRESIDLLSAELETAIRKVMNSVDIHNQLTWTKQILSQRLDNLTEEADSVSERLLELQKKADQMHNSLYQCPKIKIRQLTPLDLNSGRTFQSETEDTIPPHGEIVRAEIQVNETYYAVKNKAIASWVLCKVTETVDNVPNMGNLKHFKVKFIKSKYQMMKTVSAKHMAYFNPPEVRLPIGTRVIAYFDATSLSKGKDKVLIPSAFYPGIIAEPLKEMNKFRYLVFYDDGYFQYVYHKDVRLVCNSSENVWEDVHPQSREFMRAYLTQYTVSRPMVYTQKGQSMLVDYMGKWIYSRVIDVDCSLVQVLFEAQHRSEWIYRGSARLGPVYKEYNNLAPRNNWSSSRSVRVSQRSEPYVQYVNCDDIFPTPKPAPAPQPPPQQKPGEVRSVAKKSVSRVDSVPNTTPVPAVRHLNNSTIFVDDDNKPKGKVVYYTARKNAPPRKYEPHLCSPTCQYQISHNLQYYSPLAKPLLSGWERQIMRQKSKRFIVYRGPCGKRLRCMEELHRYLRLTESELNVDNFDFGPETNCLAEYVIESCIVQKKDISYGQEQMPIPCVNYYDNTMPPDCIYSSRRIPTEGVPLNLDTEFLVGCDCEDDCSDKSKCSCWELTYAGAKYGMPNVPNEMVGYQYKRLYEHVPTGIYECNSRCKCKANCVNRVVQQPLQSKLQVFKTSNRGWGLRCINDVPRGSFICIYAGHLLTEQKANEGGLDAGDEYFAELDYIEVAEQIKEGYESDVVEPDEDEDLYNPDKDDDDDEFVGPGDSSRSKSFNTRSRTRKSANGDHVSQERQVMSFEPNKTIGQPDNSNSEKPTIRKLFGKDEACYIMDAKITGNLGRYFNHSCSPNLFVQNVFVDTHDLRFPWVAFFAFTHIRAGTELTWNYNYEVGVVPGKVLYCQCGAPNCRQRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -