Spip018690.1
Basic Information
- Insect
- Syritta pipiens
- Gene Symbol
- rfx7.L
- Assembly
- GCA_905187475.1
- Location
- LR994572.1:72314225-72322219[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-32 1.7e-28 99.2 0.0 3 78 85 160 83 161 0.97 2 3 2 1.9e+04 -3.6 0.0 22 41 483 502 482 504 0.83 3 3 0.73 7.1e+03 -2.2 0.0 22 41 958 977 951 984 0.81
Sequence Information
- Coding Sequence
- ATGTCTGGCAATGGTAGGGCGGCCGATGACATCAAGATTCCAGATGAGGAGAAATTGCGCAAAGTTCAAGCTGTCGTCGAGTCTGGGATTGGTGACCATGCCAAACAACAGGTCCTACAAATCCTTGATAGAATTGCCACACTCAAACCAGTTGAGCGATTACTTTTGTACCTTCGTATGCCGGGAGAAACTCCGGAATCAGATCCTCTTAGGCAGCCTCAAAATCCTCTAGGAACCAGATCTGAGATTAATCATACAATCAATTGGGTTCGTTCGCATTTGGAGCACGATCCAAAGGTTTCCATTCCAAAGCAAGATGTTTACAATGATTATCTAGCATTCTGTGAACGTTTGGACATAAAGCCTCTATCGACAGCTGATTTTGGTAAAGTTATGAAGCAAGTGTTCCCTGAAATTCGTCCAAGACGTTTGGGAACACGTGGTCATTCACGGTATTGTTATGCTGCGATGAGAAAAACAACGAAGCTACCACCGCCACAGCTTCCGACGCTGGCTGGAAAGTCCTCTGATGCAGCCGGTTGCGAGATAGAGGGTGATCCAGATGCCGAGTCATGGACCACCGTTCGGACGTGGGCAGAAGGGCTGTTTAACACGAAATTTGATAACATAAAAGAACTGGCCGACCACATTGGAAAGAACGACTATGCTAGTGGTGGTGCTGGAAGCTCAAGAGTCTTGCTTCAGAAGAAACTTCTACAAAGGGACGCAAAGGAGAAGAGAGTATATGCGGATTCGGGACCACTTAAGAAACGACGAAAGAAAAAACGCAAAGGCTCCACTTCTTCCGAATCAAGCACCACGCAGAATCCCTCATCCGTTGGATCGTTTAACGAGCCATCACGGTCGAGTGATGATATTCTGCTGAGTGCACGTTCAATAAAACAAGAAATTCTAGATTCACCAAATGCACAACTCAGACCTACAGCTCCACAGATGAACTTGACTGCACCCTACGATAGCCAGATGCACGGCCATCAACTGCACCCGATGAATTTAGCAACAGAAACTGAGCGCAGTAAATCTTTAAGCAGCGCCCTACCAACTAACAGTCCAGTGGCAAAGAATCTGACAAAAGCTATCTCAGGTTTATCGCCCAGCATGTTGCCTATCGAAACACCTCAGCTCGCATCTGTGAAGGAAGAAATCATCAATGAGGAGTACAATCCGCAGAATGTGATATGCAAAAAGGTTCGACGAGCACATCTAGCCAAGGGTATCCTGCCCAGCGGCACCGCCCCGACCTCAACAATCACCACTGCTGCTGTGACAGCTGCAATCGAAACCCAACCGAGGCCACCTGCTGTTGATATGCCTCCAGTAGTTGTGAGTAACTATTCTATGGGACCACCAGCTCAGATTACCTCGTCAGGAATGGAGCCGAAAATGGCACAGCTACGCGCAAGGAAACTTCGACTACTACAGGCCCAATCGGAAATCTATCAGGGTTACGATGCCCAACAGCAGCAGCAACACTCCTCCCCAGTGGTAGACAATGAGGAGATAGCCTTGGATAAAGATGTGGTACTTCCTGAAAACCTGGGACTACCGCGTGAACGTGTCATAAGCATTTGCAACATGGATAAACATGAATTAGATGACTATTTGAATACAAATGACGAAGACAACTCCCAAGATCAAGAAGCAGAATTGCTTCAATATTTTCAGACGGGAGGCGCTGAGAACAACAATAATAACAACACAAACCACAAGGTTACACTGCAACAACAACAGCAGCAAAACCAACAACAACAAAATATAGATGCGCATAACCCAACGTTGGCAGATATCAACTCCAGCTCAGCATTTGAGGTACCAAACAAAAAGAAATCAATTGGTACATCCGGTAGCAGCTTAACCCGCGATTGTGATGACATCACAGAGCTTCGCAATTATCTTCATCAGAATTTCAATAAAGATTCCTCTGGTGATTCGATGGGAACTCTAGGTGCGGGTCCAGCACTTAATCAAAGAACGAATATTCAAATGCAGAAATTTCCATCGAATGGAGATCATTATGTAATGCCGGGCATCTACAACGAAGGGTCAGCCTCAGCGTCTCTAGCAATTATGTCTCAAAAGCATCTAAACAACACAACATCACCATCGACCGCAACAGCAACAGCAGGGACAACGAAAACAACGAATTCTACTGCCTCCGTCGGCCATGCCGCCTTAACAGTGAATCCTGTAATTTTGCCAGTCGATGACTATACCCCCGTTGCAAATAATGTGCGTGCAACGCAAAAGAGGAAAATCAATTTAAACGCAATGCTAAACGCTCCCAGTACAACACAACGGCGAAAGAACTGCACCTTCTCTCCGATTTCACCAAACATCAATCTGAGTAATATGGCAGTGAATAATGCCACATCGGTTTCATGCACGACAGGGTCTATGTCAACAACAAACAACACAAATCTGTTTGCTAGTCCAAGAATGACCACATCTTCAGTGCGTAGCAAACCGATGTTACACAAGCAGCAATCGCTTCCAGCGGCGGACAAAAATGTCATCTCCTCTGCCAACGATCCGATGCTCGGAACCGGGCGCAACAGAAACTACAACACAATGGCCTCTGCGTCGGCACCACCGAGTCCTTCGATCCTGCAGGATAATATGATGTTTGGCAAAGGTTACGGAGGTGTTGGCGGGAATACGATGGGCGAGTATGTGTTGCTTGGCAATCAGGACTATCAACACAACTTTGTGAACTCCTGCGGCACCAGCAAAATGCTAACGAATGATCACAATTCACTGGAGTGCGTTCAGGATGAGCCGCCGCCGCATTTGATGGCCGAAACACGTTCGCGAAGTGTTCCACTGCACTACCGGAACAGTCCCGCCTTCAATCAGTCAACAAACTACGCAGGATTCTCGTCAACGTGTAGCTCCGCCGCGCAGACGCCTGTTCCGACGCAATTCGCCGACTTCAGTGACCCATCCTCGCTCTTGGATATCTTCAGCGATGCCAGCCAAACACATGGTTCCTCCATGAAAATAGAAGAATCCACAGGAAGTCTACTCTGCAGCACCGGTGACATCCTTCCCTTAGAGTACAACAGGAATCCAAATACCTTCGGTGGAATCGTCTCACGATCAGTGCCATCCACACCGCTCCCGCTTCAGATGATTGATCCGTTTCTAGCAGGTAAGAATCATCAACAGCAGCAGGATTCTTTTCCCAGCGCCCAAAGTAAATATTCAACTAAAATGTACGATATATCCAAGTCGATGCCAACCACGCCGATTACTTCGAACACCGCAACGCCATCGTTTCGATACAGCCCGGAACCGAATCGGGACTTTTTGATCAATGGCAATACTGTGGAGAGTACACCGGCCTATAGCCGAGCTCCATCAGTTGCCGGGGTTTCAGGGCCCAGTCTCTCCGATGCGTTGCTCGATGATGCCAGAGAAGGTGGCTCCAATTCCCTCACCGATGGCATCGATGATTTAGGAAATTTTGGAGATGTGTCCGAGTCAATTATCGAAGCGGATATATTGAATATGAATAATCTTTGA
- Protein Sequence
- MSGNGRAADDIKIPDEEKLRKVQAVVESGIGDHAKQQVLQILDRIATLKPVERLLLYLRMPGETPESDPLRQPQNPLGTRSEINHTINWVRSHLEHDPKVSIPKQDVYNDYLAFCERLDIKPLSTADFGKVMKQVFPEIRPRRLGTRGHSRYCYAAMRKTTKLPPPQLPTLAGKSSDAAGCEIEGDPDAESWTTVRTWAEGLFNTKFDNIKELADHIGKNDYASGGAGSSRVLLQKKLLQRDAKEKRVYADSGPLKKRRKKKRKGSTSSESSTTQNPSSVGSFNEPSRSSDDILLSARSIKQEILDSPNAQLRPTAPQMNLTAPYDSQMHGHQLHPMNLATETERSKSLSSALPTNSPVAKNLTKAISGLSPSMLPIETPQLASVKEEIINEEYNPQNVICKKVRRAHLAKGILPSGTAPTSTITTAAVTAAIETQPRPPAVDMPPVVVSNYSMGPPAQITSSGMEPKMAQLRARKLRLLQAQSEIYQGYDAQQQQQHSSPVVDNEEIALDKDVVLPENLGLPRERVISICNMDKHELDDYLNTNDEDNSQDQEAELLQYFQTGGAENNNNNNTNHKVTLQQQQQQNQQQQNIDAHNPTLADINSSSAFEVPNKKKSIGTSGSSLTRDCDDITELRNYLHQNFNKDSSGDSMGTLGAGPALNQRTNIQMQKFPSNGDHYVMPGIYNEGSASASLAIMSQKHLNNTTSPSTATATAGTTKTTNSTASVGHAALTVNPVILPVDDYTPVANNVRATQKRKINLNAMLNAPSTTQRRKNCTFSPISPNINLSNMAVNNATSVSCTTGSMSTTNNTNLFASPRMTTSSVRSKPMLHKQQSLPAADKNVISSANDPMLGTGRNRNYNTMASASAPPSPSILQDNMMFGKGYGGVGGNTMGEYVLLGNQDYQHNFVNSCGTSKMLTNDHNSLECVQDEPPPHLMAETRSRSVPLHYRNSPAFNQSTNYAGFSSTCSSAAQTPVPTQFADFSDPSSLLDIFSDASQTHGSSMKIEESTGSLLCSTGDILPLEYNRNPNTFGGIVSRSVPSTPLPLQMIDPFLAGKNHQQQQDSFPSAQSKYSTKMYDISKSMPTTPITSNTATPSFRYSPEPNRDFLINGNTVESTPAYSRAPSVAGVSGPSLSDALLDDAREGGSNSLTDGIDDLGNFGDVSESIIEADILNMNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -