Spar006874.1
Basic Information
- Insect
- Syrista parreyssii
- Gene Symbol
- -
- Assembly
- GCA_030142615.1
- Location
- JARQTG010000209.1:95293-101461[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00018 0.012 16.0 1.4 1 23 240 263 240 263 0.96 2 21 2.6e-05 0.0017 18.7 1.6 1 23 269 291 269 291 0.98 3 21 0.079 5.1 7.7 7.7 1 23 300 323 300 323 0.94 4 21 0.0012 0.081 13.4 1.8 1 23 329 351 329 351 0.96 5 21 4.8e-05 0.0031 17.8 2.3 1 23 356 379 356 379 0.96 6 21 0.0004 0.026 14.9 0.7 1 23 385 407 385 407 0.98 7 21 1.5e-06 9.4e-05 22.6 0.9 1 23 411 433 411 433 0.98 8 21 0.00068 0.044 14.2 5.5 1 23 439 461 439 461 0.98 9 21 0.15 9.7 6.8 0.1 1 14 467 480 467 481 0.88 10 21 0.02 1.3 9.6 0.7 1 23 598 620 598 620 0.93 11 21 0.00038 0.024 15.0 2.1 1 23 790 812 790 812 0.99 12 21 0.32 21 5.8 0.8 2 23 825 847 824 847 0.94 13 21 0.035 2.3 8.8 7.7 2 23 854 875 853 875 0.97 14 21 0.0044 0.28 11.7 2.2 1 23 884 907 884 907 0.98 15 21 0.06 3.9 8.1 2.1 1 23 922 945 922 945 0.94 16 21 3.2e-06 0.00021 21.5 1.3 1 23 951 974 951 974 0.96 17 21 0.031 2 9.0 0.8 3 23 981 1002 979 1002 0.94 18 21 0.0051 0.33 11.5 0.2 1 23 1007 1030 1007 1030 0.97 19 21 4.4e-08 2.9e-06 27.4 0.4 2 23 1037 1058 1036 1058 0.97 20 21 3.5e-06 0.00023 21.4 0.4 1 23 1064 1086 1064 1086 0.97 21 21 9.3e-07 6e-05 23.2 0.1 1 23 1092 1114 1092 1114 0.98
Sequence Information
- Coding Sequence
- ATGCATCCGAGAAGACCGTTGCCGAAATGTCCTAGGCCTATGAGCATAATGAAATCACAGGACTGTTTAGTCAAGGAAAGTAAACCTCTGGACATCGTCAGGGTGAAAGGCGAGTGTCAGCTTCTGCCGGGCGACCATAGATGCATCACAAGAAACTGCTTAGGATCGACAGTGCGTGCAGATGCGGAAGTGGAATTGGCAAAGAAGCGCTCGTACGGCAAAAGATCAAAGATCAACACATCAAAGAATCTGGAAGGAGGTTGGCAGGATTCATACGTAGCGATGGACATAAAGGCTGAAATTGGGAAGGTTCAGACCGATCAGGATGTGGCCGACGAACGCGTGGCAGGCGatgaaaaagaacaagaagaagaagaagaagaagaagaagaagcaggagGACGAGAAGAGGAAGCGGAAGACGAGTTGCGAGTTGCCACAGAGAAGCTCAACATTTCGTGGTCGAGGAAAAAGTCGAGACGCGAGCGGATCACCTTTGGAGAGTCTGGGCAAAAGGAGGCGACCTTGACTTCGCAGATCCCCGGAGTTTTGTCGATCGGCGAGGAGGAATCAAGTTGCGAGGAGCAGAAGGACCTCGAGGAAGGATCGCAGGCTGGCCTGGTAGGTGGCGCGGCCGAGCTCAAGATCAAGAAGAAGGACGAAGCCACGGAGAGGAGGCAGCGAGAAGTTCTCTACAAGAGACTGAGGGATGGGAACTACACGTGCGACATCTGTCAAACGACCTTCGAACAGAAGAGCAAGATTCTCCGTCACATAACAAGCAAGCACAGCTTTCACAGGCCGTTCAAGTGCGCGACATGCTCCAAGGCTTTCAAGTACAAGTACGATCTGAAGGCCCACAAGCTCGTACACGAGGAGGTCGACTCGAGTCTGCTGCACTGTTGTGACAAGTGCGAGTACCGtacaaaaacaaagaacaaTCTCAAGTCCCACTATATCCGCAAGCACACGGACGATTACAAGTTCTCCTGCGAGCACTGCGGGAAGCGATTCAAGATGGAGTGGGACCTTAAGTTCCACATCGGCACTCACAGCAATTCGCAGCACATGTGCGACATCTGCGGTCGCTTCTACACGAGCAACTATTCCCTCTACAAGCATCGCAAGGTGGCTCACCTCAACGAGTACAAGTTCCAATGCTCGATATGCAACAAACGACTGCTCACTCAGGAGAATCTCGAGAGCCACATGCTCCAGCACAATCAGAGCTACGTCTGCAAGGACTGCGGCAAGGTCTTTGCCTCCAAGAGGTACTTGGCCACTCATAAAACCACCCACACTGGCGTCAAGCCATATCCCTGTCACATATGCGAGAAGAACTTTCGCACCTCTCACATGCGCAAGACTCACCTGCTGACGCATTCGGCGGAAAGGCCTCACATTTGCGACCTTTGCGGACAAGCCTTCAAGCGGAGAGGGCAAGAAAGTGGAGCTGCTGGAtgcgaagaaagagaaaagaggagaTTGCTGAAAAGCGATGCGTATGGCCGCTTCATCCTAGGACAGAATTCGGTGCCGATGAGACTATGGCAGCTGTCTGACTGTCATGGGAATCTCCGTTATTCGCTCATCCCCGCGTCGGATGACACTTCAGTGAAGGCCAGCAGACAGCAGGAGCTCATTGCGTCGAGCAACATCAAGGTCGAGGTGGCTGAAGAGTTTGTTGGGCTCGGTGGAACGACAGGAAAGTCCGAGCAAGCGGAACTCTCTAGCGAGGAGAGTCGTTACTTGGGCTCACTAGCTCATCTTTGCGAAGTGGCCATCGAGTGCTTCTCTTGTGACACGTGCACCATGAAGTTTCCCGTGGAGAGTATGTTGCTGAGACACAAATTTGGCCACAGGCAAAATTTTCGCACGAGGCAGCTGTTCATGCGCAAGAAGCAACAATCCTCTTCGTCCCAAAATTTACGAGCCAGCTCCAGCGAGGCTCGCTCGCTAAACGATCCCAACTATATGTGTCGACTCTGCAGCTTTCGTTGCGACAGGCGAGTCATTCTGACCTCTCACGTCGCAGCGAAGCATCCCTGCGCTCGGCTGGAGAAGGAAGAGTCGGCTCCTCGCACCTGCTCCGACTGGGCATCACAGAGCATGAAAACATCCAGCAGACGGCAAAATTCTAAGCGGGTGCTTCTGGTACGGGGGAGGCAGACAGGGGTGGCACGTCAAGTACCGGATGAGGAAACCGAGTGTTGTGGCGACAGTGGCAATGATGCCGATAACGATAAGGATGCACAGGATCTAGACGATAATATAccggaagagagagaggaagccgaagagaaaaacaaagtcGAACGCGGGGATGATGGCGAAAGTAAGGGGGGACTAAAAGAGGGTAGCGAGAATTATCGATGTGACGTGTGCTCGTTCGAAACCAGCCGAAAAGATAAATATCAGAAACACTTGCGGGTGCACAAGCGACGCCGTGGATCGAGCCCGCGAGCGATTCTTTCCTGCGGTCGCTGCGACTTCCGGTGCAAGAACGCCCCCACTCTGGATGCTCACGTCATCCGAAAGCACGACGCGAACGAGCAGTGCCAATGCAACATTTGCGACTTCAAGTGCGCGAAGAAGAGCACTTTGTACTCGCACAAGAGGAGGCATCGTATCCAGGAACTCGGAAACGTGTACTCGTGCAATGAGTGCGGCTTCAAGACCGGAAAGAAGACCAGCCTCTACTCGCACATTAAGCGAAAACACAAGTCGACTCGTTTAGTGTCAGGCGTCAAGGCGccagaatttttcttttgcaatcAGTGCGACtacaagaacaaaaacaagTACGAACTGAAGGTTCACGTTGCACGCAAACACACCGATGACTTCAAATTTTCGTGCGAAACATGCGGCAAAAAATTTAAGGTGAAGGGAGATCTGACCAATCACATAAGGTTCACTCACAAGGAGCAACCTGTGATCTGCGACGTCTGCGGCAAGACCTGCCTCAACAGCAACTCCTTGTACGTTCATCAGAAATTCGCCCACTACAAGGCCAAATACGAGTGCGCCATCTGTAAGCGACGCATGGTGAGTCAGGAGAATCTCGACGAGCACATGCTCCGTCAACACGAGAAGCGGGAAAACGTCGTATGCGAGGAGTGCGGCAAGACTTTCTCACGGAACAGTCGGCTGAAGGTGCACATGAGGATTCACACTGGCGACAAGCCCTACGCCTGTACGATCTGCAGCAAGTCCTTCGCTCGGCGCACTGCCCTTAAGCAACACCTCCTCATACACACGGGAGTGAGACCTTACGTGTGCGACATTTGCGGCAAGGCCTTTACGCAAAAACCTGGACTCATCAGCCACCGGAAGTCTCATCCTGGATCTCATCCGCCGCTTCCGAGGGTTCTAATAGACCACATTCTCAATGACGTCATGAACAATTAA
- Protein Sequence
- MHPRRPLPKCPRPMSIMKSQDCLVKESKPLDIVRVKGECQLLPGDHRCITRNCLGSTVRADAEVELAKKRSYGKRSKINTSKNLEGGWQDSYVAMDIKAEIGKVQTDQDVADERVAGDEKEQEEEEEEEEEAGGREEEAEDELRVATEKLNISWSRKKSRRERITFGESGQKEATLTSQIPGVLSIGEEESSCEEQKDLEEGSQAGLVGGAAELKIKKKDEATERRQREVLYKRLRDGNYTCDICQTTFEQKSKILRHITSKHSFHRPFKCATCSKAFKYKYDLKAHKLVHEEVDSSLLHCCDKCEYRTKTKNNLKSHYIRKHTDDYKFSCEHCGKRFKMEWDLKFHIGTHSNSQHMCDICGRFYTSNYSLYKHRKVAHLNEYKFQCSICNKRLLTQENLESHMLQHNQSYVCKDCGKVFASKRYLATHKTTHTGVKPYPCHICEKNFRTSHMRKTHLLTHSAERPHICDLCGQAFKRRGQESGAAGCEEREKRRLLKSDAYGRFILGQNSVPMRLWQLSDCHGNLRYSLIPASDDTSVKASRQQELIASSNIKVEVAEEFVGLGGTTGKSEQAELSSEESRYLGSLAHLCEVAIECFSCDTCTMKFPVESMLLRHKFGHRQNFRTRQLFMRKKQQSSSSQNLRASSSEARSLNDPNYMCRLCSFRCDRRVILTSHVAAKHPCARLEKEESAPRTCSDWASQSMKTSSRRQNSKRVLLVRGRQTGVARQVPDEETECCGDSGNDADNDKDAQDLDDNIPEEREEAEEKNKVERGDDGESKGGLKEGSENYRCDVCSFETSRKDKYQKHLRVHKRRRGSSPRAILSCGRCDFRCKNAPTLDAHVIRKHDANEQCQCNICDFKCAKKSTLYSHKRRHRIQELGNVYSCNECGFKTGKKTSLYSHIKRKHKSTRLVSGVKAPEFFFCNQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFTHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECAICKRRMVSQENLDEHMLRQHEKRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYACTICSKSFARRTALKQHLLIHTGVRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00253752;
- 90% Identity
- -
- 80% Identity
- -