Cido006257.1
Basic Information
- Insect
- Calameuta idolon
- Gene Symbol
- -
- Assembly
- GCA_030142285.1
- Location
- JARQSV010000387.1:94820-101002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00022 0.016 15.7 1.2 1 23 230 253 230 253 0.96 2 21 2.6e-05 0.0019 18.6 1.6 1 23 259 281 259 281 0.98 3 21 0.078 5.6 7.7 7.7 1 23 290 313 290 313 0.94 4 21 0.0012 0.089 13.3 1.8 1 23 319 341 319 341 0.96 5 21 4.7e-05 0.0034 17.8 2.3 1 23 346 369 346 369 0.96 6 21 0.0004 0.029 14.9 0.7 1 23 375 397 375 397 0.98 7 21 1.4e-06 0.0001 22.6 0.9 1 23 401 423 401 423 0.98 8 21 0.00067 0.048 14.2 5.5 1 23 429 451 429 451 0.98 9 21 0.00012 0.0088 16.5 2.3 1 23 457 479 457 479 0.97 10 21 0.011 0.78 10.4 1.3 1 23 620 642 620 642 0.96 11 21 0.00054 0.039 14.5 2.1 1 23 805 827 805 827 0.99 12 21 0.65 47 4.8 0.8 2 23 841 863 840 863 0.94 13 21 0.035 2.5 8.8 7.7 2 23 870 891 869 891 0.97 14 21 0.0012 0.09 13.3 1.9 1 23 900 923 900 923 0.98 15 21 0.059 4.3 8.1 2.1 1 23 938 961 938 961 0.94 16 21 3.2e-06 0.00023 21.5 1.3 1 23 967 990 967 990 0.96 17 21 0.031 2.2 9.0 0.8 3 23 997 1018 995 1018 0.94 18 21 0.0033 0.24 12.0 0.2 1 23 1023 1046 1023 1046 0.97 19 21 4.4e-08 3.2e-06 27.4 0.4 2 23 1053 1074 1052 1074 0.97 20 21 1e-06 7.4e-05 23.0 0.4 1 23 1080 1102 1080 1102 0.97 21 21 9.2e-07 6.6e-05 23.2 0.1 1 23 1108 1130 1108 1130 0.98
Sequence Information
- Coding Sequence
- ATGAGCGTAATGAAATCACAGGACTGTTTagtcaagaaaaataaacctCTGGGCATCGTCAGGGTGAAAGGCGAGTATCAGCTCCTGCCGGAAGACCATAGATGCGTCACAAGAAAGTGCTTAGGATCGACAGTGCATGGAGTCGCGCTAGTGGAATTGGCGAAGAGGCGCTCGCACTGCAAAGGAAGCAACACATCGAGAAATTCCGAAGGAGGTTGGCATGATTTGTACGTATCGACAGACGCGAAGGCTGAAATTAGGAAGATTGACGGCGATCAGGACGTGGCCGAAGAGCGCGTGAcgttcaatgaaaaagaagaagaagaaaaagaagaagaagaagaagcaggaagaggaggaggagtggAGGAGGAAGCGGAAAACGAGCTGCGAGTCGCAACGGAGAAGCTCAACATTTCCTGGACGAGGAAAAAGTCGCGAGGCAAGCTAATCACTTTTGGAAAGTCTGAGCAAAAAGAGGCGACGCTGAGCTCGCAGGTACCCGGAGCTCCGCTTATCAGCGAGGAGGAGTCAAGTTGCGAGGAGCAGAAGGAACTCGCAGAGAAGGAATCGCATCCTGTGCTGCTGGAAGACGGTACGCTCCTCGAGCtcaagacgaagaagaaggacgaACCCACGGAGAAGAGGCAGCGAGAAGTCCTCTACAAGAGGCTGAGGGATGGAAACTACACGTGCGACATCTGCCAAATGACTTTCGAACAGAAGAGCAAGATTCTACGTCACATAACGAGCAAGCACAGCTTTCACAGGCCGTTCAAGTGCGCGACATGCTCGAAGGCTTTCAAGTACAAGTACGACCTGAAAGCTCACAAGCTCGTGCACGAGGAGGTCGACTCGAGTCTCCTGCACTGCTGCGACAAGTGCGAGTACCGTACGAAGACAAAGAACAATCTCAAGTCCCACTACATACGCAAGCACACGGACGACTACAAGTTCTCCTGCGAGCACTGCGGAAAGCGATTCAAGATGGAGTGGGACCTCAAGTTCCACATCGGCACCCACAGCAATTCCCAGCACATGTGCGACATCTGCGGTCGCTTCTACACGAGCAACTATTCCCTCTACAAGCATCGCAAAGTCGCTCATCTCAACGAGTACAAGTTCCAATGCTCGATTTGCAACAAACGGCTCCTGACCCAGGAGAATCTCGAGAGCCACATGCTCCAGCACAATCAGAGCTACGTCTGCAAGGACTGCGGCAAGGTATTTGCCTCGAAGAGGTACCTGGCCACTCATAAGACCACGCACACTGGCGTCAAGCCCTATCCCTGTCACATATGCGAGAAGAACTTTCGCACGTCTCACATGCGCAAGACGCATCTGCTGACGCACTCGGCGGAGAGGCCTCACATTTGCGACCTTTGCGGACAGGCGTTCAAGAGGAGGTACTACATGATCGAGCATCGCAGGAAGCATCCTGACGCCCACCTATCCTCGCCACCGGTTCCTCTTGGTAGGAACAAGATACTCGGGGAAGAGCAAAGAAGCGGAGCTGCTGTTGCTGAACGCGAGggaagagaaaggaggaaatTGCTCAAAAGCGATGCGTATGGCTGCTTCGTTCTAGGAGAGAATTCGATGCCGATGAGACTGTGGCAGCTGTCTGACTCCCATGGGAATCTCCGTTATTCGCTGGTCCCGGCATCGGATGACTCTTCGGGAAGGACCAGCAGACAGCAGGAAGTCATCGTGTCGAGCAACATCAAGGTCGAGGTGGCTGAAGAGTTTATGGGAGTTGGTGGGTCGGCAGGAAAGTCTGAGCAGGTGGAGCTCTCTAGCGAGGAGAGTCGTTACTTGGGCTCGCTTGCTCATCTTTGCGAAGTGGCCATCGAGTGCTTCTCTTGCGACACCTGCACTATGAAGTTTCCCGTAGAGAGTATGCTGCTCAGACACAAGTTTCGTCACAGACGTAACTTTCGAGCAAGACGACTGTTCGTGCGGAATAAGAAAGTCTCTTCGTCCCAAAATTTACGGGTCAGCTCCAGCGAGGCTCGTTCGCCAAACGATCCTATCTACATGTGTCGGCTCTGCAACTTCCGGTGCGACAGACGAGTCATTCTGAGCTCACACGTCGCGGCGAAGCATTCCTCCGCTCAGCTCGAGAAGGAAGTGCCGGCTTCTCGTAACTGCTCCGACTGGGAGTCACATAGCATGAAGACATCCAACAGACGGCAGACCTCTAAGCGGGTGAAAAGGAAAGGGGAAACGCGTCAAGTAGCGGAAAAGAAGAGCAAGTGTTGCGGCGACGGTGTCAATGTCGACGATAACGATGAGAACGATGCGAAGAGTCTAGACGACAACGTGGAGGAAGCCGAGGAGAAAGACGAAGACAAAGTTGAAGGGGAAGACGATGGCGAAAGTAAGAAGGAACATGAGCAGGGCGAGAGGAATTATCGTTGCGACGTGTGTTCGTTCGAAACCAGCcgaaatgataaatataagaaacatCTGAGGATACACGAGCGACGGCACGGAACGAGTCCTCGAGGGATGATCCTGTCATGTGGTCGCTGCGACTTTCGGTGCAAGAACGTCCCCACTCTGGATGCGCACATCGCCCGCAAGCACGACGTCAAAGAGCAGTGCCAGTGCAACATCTGCGACTTCAAGTGCGCGAAGAAGAGCACTTTGTACTCGCACAAGAGGAGGCATCGGATCCAGGAACTCGGAAACATATACTCGTGCAACGAGTGCGGCTTCAAGACCGGGAACAAGACCAGCCTCTACTCGCACATCAAGCGGAAACACAAGTCGACTCGTTCGGCGTCAGGCGTCAAGGGGCCggaatttttcttctgcaaTCAGTGCGACTACAAGAATAAGAACAAGTACGAACTGAAGGTTCACGTGGCACGCAAGCACACCGACGACTTCAAATTTTCGTGCGAAACATGTGGCAAGAAATTCAAGGTGAAGGGAGATCTAACCAATCACATAAGGTTCACTCACAAGGAGCAACCTGTGATCTGTGATGTTTGCGGCAAGACCTGCCTCAACAGCAACTCCTTGTACGTACATCAGAAATTCGCCCACTACAAGGCCAAGTACGAGTGCGGCATCTGCAAGCGACGCATGGTGAGTCAAGAGAATCTGGACGAGCACATGCTGCGTCAACACGAGAAGCGGGAGAACGTCGTGTGCGAGGAGTGCGGCAAGACTTTTTCGCGGAACAGTCGGCTAAAGGTGCACATGAGGATTCACACCGGCGACAAGCCCTACGCCTGCAACATCTGCAACAAGTCCTTCGCTCGGCGCACTGCCCTTAAGCAGCACCTCCTCATACACACGGGAGTGAGACCTTACGTGTGCGACATTTGCGGCAAGGCCTTTACGCAAAAACCGGGACTCATTAGCCACCGGAAGTCTCATCCTGGATCTCATCCGCCACTGCCGAGGGTTCTGATAGACCACATTCTGAATGACGTCATGAACAATTAA
- Protein Sequence
- MSVMKSQDCLVKKNKPLGIVRVKGEYQLLPEDHRCVTRKCLGSTVHGVALVELAKRRSHCKGSNTSRNSEGGWHDLYVSTDAKAEIRKIDGDQDVAEERVTFNEKEEEEKEEEEEAGRGGGVEEEAENELRVATEKLNISWTRKKSRGKLITFGKSEQKEATLSSQVPGAPLISEEESSCEEQKELAEKESHPVLLEDGTLLELKTKKKDEPTEKRQREVLYKRLRDGNYTCDICQMTFEQKSKILRHITSKHSFHRPFKCATCSKAFKYKYDLKAHKLVHEEVDSSLLHCCDKCEYRTKTKNNLKSHYIRKHTDDYKFSCEHCGKRFKMEWDLKFHIGTHSNSQHMCDICGRFYTSNYSLYKHRKVAHLNEYKFQCSICNKRLLTQENLESHMLQHNQSYVCKDCGKVFASKRYLATHKTTHTGVKPYPCHICEKNFRTSHMRKTHLLTHSAERPHICDLCGQAFKRRYYMIEHRRKHPDAHLSSPPVPLGRNKILGEEQRSGAAVAEREGRERRKLLKSDAYGCFVLGENSMPMRLWQLSDSHGNLRYSLVPASDDSSGRTSRQQEVIVSSNIKVEVAEEFMGVGGSAGKSEQVELSSEESRYLGSLAHLCEVAIECFSCDTCTMKFPVESMLLRHKFRHRRNFRARRLFVRNKKVSSSQNLRVSSSEARSPNDPIYMCRLCNFRCDRRVILSSHVAAKHSSAQLEKEVPASRNCSDWESHSMKTSNRRQTSKRVKRKGETRQVAEKKSKCCGDGVNVDDNDENDAKSLDDNVEEAEEKDEDKVEGEDDGESKKEHEQGERNYRCDVCSFETSRNDKYKKHLRIHERRHGTSPRGMILSCGRCDFRCKNVPTLDAHIARKHDVKEQCQCNICDFKCAKKSTLYSHKRRHRIQELGNIYSCNECGFKTGNKTSLYSHIKRKHKSTRSASGVKGPEFFFCNQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFTHKEQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECGICKRRMVSQENLDEHMLRQHEKRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYACNICNKSFARRTALKQHLLIHTGVRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395278;
- 90% Identity
- -
- 80% Identity
- -