Sumb016284.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01000011.1:59875-67776[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.5e-06 0.00052 20.9 1.2 1 23 158 181 158 181 0.97 2 13 0.11 13 7.0 0.1 2 23 243 265 242 265 0.88 3 13 0.00049 0.056 14.5 0.3 2 23 353 375 352 375 0.90 4 13 0.0025 0.29 12.2 0.4 1 23 692 714 692 714 0.98 5 13 0.014 1.6 9.9 0.5 5 20 803 818 801 820 0.91 6 13 0.0097 1.1 10.4 0.9 1 23 970 992 970 992 0.98 7 13 0.15 17 6.6 0.3 6 23 1003 1021 1003 1021 0.94 8 13 0.54 62 4.9 0.8 2 21 1026 1045 1025 1046 0.92 9 13 3 3.4e+02 2.6 0.3 2 10 1115 1123 1115 1135 0.78 10 13 0.0037 0.42 11.7 3.1 1 23 1140 1163 1140 1163 0.90 11 13 0.53 60 4.9 5.5 2 23 1169 1189 1169 1189 0.97 12 13 0.00092 0.11 13.6 1.6 3 23 1195 1216 1193 1216 0.92 13 13 0.0024 0.27 12.3 0.5 2 19 1224 1241 1223 1244 0.94
Sequence Information
- Coding Sequence
- ATGGATGGAATAACACCGCAAGTTTTAGAGAGTGTTACAAATTCTGAAGTGAAAACTGTTGTCTCCACAACATGCGATGAAAAAGTTACCATCAAGCAAGAAATCCAAGATATCACGGATGAAAACTTTGAACTTCAGTCTACAATATCGACAGGATCTGTGATCAATGTTGTCCAGATGGATCAccaaaaaatgtattccttTTACAAAGAAGGcttcaatttaaaagactGTTTTATTCGCCTCGAAAAATGCGATAAAATCTGGGAAACTCTAAAGGTTATAAAGAATCTCCAGCTCTCAAATCCCAAGGAAACGAACAATGGGGACTATGCAGCAGCTTTTCAGAATGCCATGCACAGTCATTCGAAGCCCACGACACCAGAACCAATGCAGTACCATCCAGTCTTAAACAACGGAAATGCTGCCTTGCCCAATTTTCAGTTCGCCATCAAGAGCTGGAAACGATTGTACACTTGTACCTATTGCGGAAAGCAATATACCGAGAACCGAAATCTAAAATTGCACATGGCAAAAGTTCACTCTGTATTTCCTACTTCCAAAAAAGTACCTATACCTAAGGAAGTTCCTCAAGTTCCtcttaataatgaaattacaCGTCCTCTAGATATTCCTCATTCCAAGGAGATTTCTCGTTCTAAAGAAGTTTCTCAAATCAAGGAAACTTCTCAACTTAACAAAACTTCTGTGAAGCCAAATCCTTTAGTCTGCCAAACGTGTGGCAAAAGTTATGCTGACGGTCGCTCAGTGGCTTCTCACTCTCTCCGTGTGCACGGAATTCTAACCGAGTACCATGAACGATGGTTAGCTCAACAGGAAAATCCAAACGACTTCACCGTGGAAGATCTGCTCAAACGACACTCTTGCAAAACTTGTAGTAAAAGGTACAGCTGCATGAAAAGTTTACGTTTACATTATTTGCGAGAACACAATGTAGTTATTCCTATGATGCGGAGAGGTCGGAATGCAACCACCTTCATGTCATTGCCGAAAAAAGCAGCAACACATTCCGGTGATATGCAAAAGCACATGAATGTCTGTAATATCTGCGGGAAAAAGTACACCAAAAATTGGTATCTGCGTGTACATTCACTAGAAGTTCATGGCATTCCCATGCCTTGTGGCAGAGTGAAGTCAAACTTCCCAACTAAGTTGCGGGtcataaagaaagaaattatcgAAGAACCTTCATCTCCAAAAGAGGAACAGAATTTCACTTCACCCGTAAATTCCCCAATATCAAATCAAAAGCACAAATTAGTAGTGACTGAAAAACTCAAATCCCCAATCATACCTGCACGAGTATTAAAGATGTACCAATTACCAAGGATACGAAAACCCTATCGGAAGAATAATTCTCTACCTGTAAAGATTGAGTATGAGACGAAGATTAAGGTAGAGGAAAAAAGAGAACCTCAAGTTTCGACTCCAAAGCAAGTCAGTTTGGACCGATACTTGAAAAGCTCTCCCATTGGGGAAAGCACATCCAACAAGATCAATTCGAATTTACCTCCACCACAAAGTGGtcctataaaagaaaaaatcgtcaaacAAACAGTTCCTCCAAGAGAAACAATTGCTCCAATGGAAAGCGCTCCAGCCTCAGTAAAAGTAAACTCTCgttcaaaagaaaaagtttcgaAGGTACCAACAGAGTTTGTCAAGTGCAATTTGTGTTCTCGAGCCTGTAAAGACATTAGGAAGCACTACATTACTTATCATAAAATTCGTTATCCTGAGTCTGTAATGGAAGCTCCATTCTTCGTCAGTGAAGCAGTTGGAAGCACTGTGACCCCGGCAGTTATTCCTGAAAAAGAACAAGTGTTGGCATCAGAATCAGAAACGCAAGAAAGTGTTTCAACAAATAAACGCACGAAGAAGAGGAGACGTAGATTTTTTACAATGATGCCGCGAAAGAGACGCAGGACTGAAGAACCTCGGCAACAAGAGGTTCCAGTGATTCCAAATCCAGTAGCTCCAATTTCGGAAATAAATAACTTGAGAGTCCAGGGTCCCAAAACTAAAACGGTGTCTGACCCTGACAAATCGGTGTTTCAATGCAATATCTGTGACGGATACTACGCGACTGCTAGAAGCTTGAGAATCCACAGAGACAAACATAAATCGAAGGGAGAGACTAGAGAGAACATTCACCTTATTAAGCATCACTATAAAAATGGATGGAAGTCAACTAAGAAAATTGACATGCCAAGCTTTGATGAATCTGCAGTAAGCACGGATATGGATGCAGATGTGGACATTCAGGATGACTCCTTAACGTCTTACAATGGTAGTGTTACGCAGTCGTCTAGTTCGGAATCGAGGGATAATAATCGAAGATCGACGAGGAGTACAAGCTCTTATACTTTGAGTGAAATTACTTGCGAATGTGGAAGGTCCTTCCGCGATCCTCATACGTTATTTGTACACAAGGAGAAGTGCAGAACAGCGCATAGAATCGAAAGAGAGAAATCGATGGTTACGAGATCCAGTAGCGATCGGGATTCGGGAATTGGAATAAGTATTACGATAAAGAAGAAGAATGATTCGTATGAAATAGTCAGCAGGGACAGTGGCGACGATGATAAATCTAAGGATTCTATTACTTCGAAGGAAACGGATCAGATGTCCCGTTCTTCCGACACCAATTCCTCTAGCTCAGTCTTTAACGGTAGCAAGTACTGTGATCTGGTACAGGCACAATACAGTAAGGACCACAGCATTCTAAAGATTCAGGTTGCTGAAGATGACGAGGATGTAGACGTCGAGGACGACAGTCAATTAAACGTGACTGAGCCCGAACCCATGGACGTAGACACACGCAAAAAGCAGCATGAACCTCTCAGAAGCGAGAGTAGGATGGCAGATCCCTTAGATGTAGACCTTTACAGATGTGCAACATGTTTTGAACTTTTccaaaaagaagaagatctAAAAAAGCACATGACCATTCATGAAAAACGTCCTGCCCGACAGGAATGTCCTTGTGGAAAGACGTTTAGAGGGTCTCAAAGTTTTCTCACCCACGTACAAGAATATCATCCTCTCTGGCTTCAATGCGGATATTGTGAcgcgaaatttttaaatagtaaagaGTATTATGCACACATTTGTAAAGTAAATCAAGGAAAAGATTTCCAAGATCTGCAAGAGATTACCTGCAGCATTTGCCAGTTTAAAGTCAAGATGGCAAACTTTGATGCCCACGTAAAAAGAGAACACTTAGTTCCCCAGGCTCCCTATTTATGCTATTATTGCCAAATGCGTTTCCTCAATGGCTTGCAAAGAAGAGCACACTTGAGTAAAGATCACACTAGACCCTCCTGTAAAGTTTGTGGCAAAACTTTACGATTTGACTTTGCAGCAAAGCACGAGGCTTATCATGACGGTCTTGGTTATCCTTGTCATATTTGCAAAAAAGCTTTCTCTTCCTTGAAACATGCGAATAGTCATAAATATGAAGTTCATGTCAGAGAAGATGAAGAGtgcaaaatttgtaaaaaagttattagtCATAGGCATATGAGATATCATATGCGAATGCATTCTAGCAAggataattgtaaaatttgtaataagaattttcacaataaCCGTGCGTTAAAAGATCACATTTATTTGATACATGCAAATAATTATCCATTTGTAAAGTGTGATAATTGTCAACTGTCCTTTACATCTGAAAGGTATCTTAAACGACATTTTATTCAAGATATATGTACAAATGTTAGTAAAGCATCGAATATAACGGAAAGTAAGAAGGTGGAAGAaagtgaagaagaagaagatgtGGTGGCGGGGGACACCGAGGAGAGTGAAACTGAGGAGGTGGACGTAACTGAGGAAGTGGACGAAACTCAGAAGGTGAAGAACGTTTCCAAAATTAGAGCCACTTTGAACAAGAAAACTGAGAAGAGCAAACAAAAAGAGGAGGAGAAGACTTTAAAGGAAGTATCTTTGATTACGGAAATGAATGGGGAGACAGAAATTTCTGAAGAGGAAGATAATATGGTGCTGAACATATCTGAAGATGTAATAGAAACTGAAGAAATAGAAACTAAGGAGGTTAACGTTCCtgagaatgtaaaagaaaGTAAGAAGTCGGAAGAAATTTCGATGATTATAGAAActgaagagagaaaaaaagattcggaaaaaggaaaaattccaGAGATGGAAGTAGTTTTGAAGAAAGAAGACACTTTAGAGAATGACGAAACTTCGCAGAAGGAAACCGAGGAGATCATAGAAAATACTTTGGAGAAGGATGTAGTTTCAGAGAATAGGAAAGCACCTTTGATACAAGAAAATTCAGACTTAAGAAGACTTGTTGAGACAAAAGAAATCTCCATGACGAAAGAAATTCCGAGCAAGAAACATGTTGAGTCGTAA
- Protein Sequence
- MDGITPQVLESVTNSEVKTVVSTTCDEKVTIKQEIQDITDENFELQSTISTGSVINVVQMDHQKMYSFYKEGFNLKDCFIRLEKCDKIWETLKVIKNLQLSNPKETNNGDYAAAFQNAMHSHSKPTTPEPMQYHPVLNNGNAALPNFQFAIKSWKRLYTCTYCGKQYTENRNLKLHMAKVHSVFPTSKKVPIPKEVPQVPLNNEITRPLDIPHSKEISRSKEVSQIKETSQLNKTSVKPNPLVCQTCGKSYADGRSVASHSLRVHGILTEYHERWLAQQENPNDFTVEDLLKRHSCKTCSKRYSCMKSLRLHYLREHNVVIPMMRRGRNATTFMSLPKKAATHSGDMQKHMNVCNICGKKYTKNWYLRVHSLEVHGIPMPCGRVKSNFPTKLRVIKKEIIEEPSSPKEEQNFTSPVNSPISNQKHKLVVTEKLKSPIIPARVLKMYQLPRIRKPYRKNNSLPVKIEYETKIKVEEKREPQVSTPKQVSLDRYLKSSPIGESTSNKINSNLPPPQSGPIKEKIVKQTVPPRETIAPMESAPASVKVNSRSKEKVSKVPTEFVKCNLCSRACKDIRKHYITYHKIRYPESVMEAPFFVSEAVGSTVTPAVIPEKEQVLASESETQESVSTNKRTKKRRRRFFTMMPRKRRRTEEPRQQEVPVIPNPVAPISEINNLRVQGPKTKTVSDPDKSVFQCNICDGYYATARSLRIHRDKHKSKGETRENIHLIKHHYKNGWKSTKKIDMPSFDESAVSTDMDADVDIQDDSLTSYNGSVTQSSSSESRDNNRRSTRSTSSYTLSEITCECGRSFRDPHTLFVHKEKCRTAHRIEREKSMVTRSSSDRDSGIGISITIKKKNDSYEIVSRDSGDDDKSKDSITSKETDQMSRSSDTNSSSSVFNGSKYCDLVQAQYSKDHSILKIQVAEDDEDVDVEDDSQLNVTEPEPMDVDTRKKQHEPLRSESRMADPLDVDLYRCATCFELFQKEEDLKKHMTIHEKRPARQECPCGKTFRGSQSFLTHVQEYHPLWLQCGYCDAKFLNSKEYYAHICKVNQGKDFQDLQEITCSICQFKVKMANFDAHVKREHLVPQAPYLCYYCQMRFLNGLQRRAHLSKDHTRPSCKVCGKTLRFDFAAKHEAYHDGLGYPCHICKKAFSSLKHANSHKYEVHVREDEECKICKKVISHRHMRYHMRMHSSKDNCKICNKNFHNNRALKDHIYLIHANNYPFVKCDNCQLSFTSERYLKRHFIQDICTNVSKASNITESKKVEESEEEEDVVAGDTEESETEEVDVTEEVDETQKVKNVSKIRATLNKKTEKSKQKEEEKTLKEVSLITEMNGETEISEEEDNMVLNISEDVIETEEIETKEVNVPENVKESKKSEEISMIIETEERKKDSEKGKIPEMEVVLKKEDTLENDETSQKETEEIIENTLEKDVVSENRKAPLIQENSDLRRLVETKEISMTKEIPSKKHVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01393846;
- 90% Identity
- iTF_01392316;
- 80% Identity
- -