Sumb024877.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus umbraculus
Gene Symbol
-
Assembly
GCA_900474325.1
Location
UCOK01018761.1:169486-174017[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0018 0.21 12.7 4.5 1 23 360 383 360 383 0.93
2 12 0.044 5 8.3 0.3 1 23 401 423 401 423 0.98
3 12 0.00012 0.014 16.3 0.5 1 23 487 509 487 509 0.98
4 12 0.016 1.8 9.7 0.2 2 23 635 657 634 657 0.95
5 12 5.9e-05 0.0067 17.4 0.5 1 23 676 698 676 698 0.99
6 12 0.27 31 5.8 0.5 2 23 709 730 708 730 0.94
7 12 0.00011 0.013 16.5 0.8 2 23 754 776 753 776 0.96
8 12 6.7e-05 0.0077 17.2 0.5 2 23 779 801 778 801 0.95
9 12 0.029 3.3 8.9 0.0 1 23 806 828 806 828 0.97
10 12 3.3 3.7e+02 2.4 5.6 2 23 845 866 844 866 0.92
11 12 0.0018 0.21 12.7 1.5 1 23 873 895 873 895 0.97
12 12 0.0019 0.22 12.6 0.5 3 23 907 927 906 927 0.98

Sequence Information

Coding Sequence
ATGCCTATGAAACATTGTGCATCGCGAACGTGCCTCAATACGTCATATACGAAACctcttttgaagtttttccCATTTCCAAAGTCAGAAAAATTCGCGAAAGCTTGGGCAGAAGCATGCAAGTCTCcagaattattaaataaaacaatggATCAACTCACTCGTCTCTACCTTTGTGCAGAACATTTTGAAGATAAATGTTTCACAGATCCATTACGAAAGACCACACTTGTCAAATGGAATAATGTTTATTCAATGCCGACCAAATTTAAGCACAATAAACCTGAAGATTCGGCTGCAAATGTAATTCGTAGAAGTGTTCTCTATGAGACGAATCCAGAGctcaaacttttaaaagaGTCTTCTAAAAgcaattatatgaaaatatgcaGATTCTGTTTGAAGTTCACAGTAACTCTTGTTCCAATCTATGGCAATTACTCTTTCTATCAGCcgctaataataaaattgcgaCCTTTTGGGATTTGCATAAAAGAAAACGATGGATTACCCGCACTTATTTGTCGGACTTGTGCTGCAAAATTATTGTTAGTCGTCGAAACGTTGGAACAATTTCACGATTCtgaacaaaaattgaaattagcaTTATGCACAGACCTAAGCACAATAAACGATcAAGCGAAAATAGTACATgaaattgtttcaaataatGATAGAAATGAATCAAGCCagaatgaaatttctccaCCAGAGTCCCCAAATTCTCAGCAAAATCGGCAAAAAGAACCGgataatgaaaatttggaGAACAGAAATAGCCTTCAAGTTGAAAATATAGAAGTTAACGAAGAAAGCAGTCAAAACTTAGTAAAAATGGAAGTGATGGATGAAGAAAATAACACCTCCGAACCCTAtccaattcaaattaattctcCAATCATAAAACAAGAGCTTGAAATTGATGATGTTCCGCCTACGAATGCAGAaaattctaaagaaaCTTCGTGCCAACAGTCAGTATCCATCGAATTCCAAGATTGTGAAACAACCAGTACTGAAAAAGAACGAATGTCCACTGCTCTTGAAAATGATCCACTCAGTGACGAATCCTATAAACATTCCTGCAAATATTGTGGTCTCTTCTTTGCCCACAAAGTGTTTTTGACGAGGCATGTGGAAAATAAACACAAAAATGTTGAACTTATCGCACAAAGTATTATCAAATCAAGAACGAAAGAATACAAATGCACAGTATGTCAGGGCGTGGTAAAAAGTTCCCTAGCGTATCTTTCCCATTTAAAAATGCACGCCGCTGCAACTCCAGGCCTCGAACTCTCGGAACTAAGAACCGAAGCTTTTTCAACTACTCTTAAGATGAACTCCTCAATCCCAGTTAAAATTGTAGGCCAAACAGATGACCAAGCAGAAAACCAAACAAAAGGACCGCCCAGAAAAATCCAAAAAGTCGGTATTCTCAAAAACAACATCCAAAGTCTTTTTGAATGCGATCTTTGTGGTCTTTCCTTCTTTAAAAAGAATGAACTGCTTTTACATGTACAGACTCATAAATCTGCAAGACCTGAAATCAGTACATATATCAATAAACCATTTCGCCTCGAGATGGGTAATGTAGCACAAGTACAAACTAAAAGAACAAAAGAGGTAAACATTGCtgaagaggaaaatatatCTTATCCTGAGTCcgaaatattatttgtaaacATCCCTGTCAAAAACGAGGAAGAAATTCCCATCATTGATTTGGAAGAAGACTCTTGTtccaaaaatcaaattattcaaaatcctgACGAAAATAAAGAGCAGAAAGGTGAGGAAAATGGAAACATGAATGATTTGGTTGAACGCTTACAAAATTCAGAGGACTCTGGATCTAATTTAAAAGCGGCGATTGAGATGGAACTCGATGACAGAGAAATTGTCATGTGCTCGCAATGCTCAGCAGTTTTTGCAACGAAAGCTGGAATGATTAAACACTTTCAAAAGCAGCATGGCAATGATCCATTGGCCCTGAAAACTTacaaaatggtaaaaatagaTAGGACATATACTTGCGGAATTTGTAAGATCAGTTTTGGAACGAAAAAGGGTTATGAAACACATCTAAGGATTCATATGAGCACTAATTTGTCTTTAGTTAATAAAGTTTGTGACATTTGTGGCTATGATACGAGGAATGAGAATATGTTTAGGTTTCACATGGATAGCCATATAAAGAAATCCTACGAGGAAAATAAACTTAAGAAGCTTCAAGTGTTTGGTCTCAATCTCAAAGATCTAAAATGTACCGTTTGCAAGGAAAAATTTAACACAACTTCGATGCTGGTCACTCATATGAGTTCCGCGCACTTGGTttcatgtaaaaaatgtaacgaGGAGTTCCAGACACaagaaaaattgaacattCACATGAGAGAGATTCATCAAGAATCAGAATACATTTGCAATATTTGTGGAGATGACTTTGATGAGCAGGAGTCCATTTACAGGCACATCATTTCACATGTGAAGAAAAAAGCTAATTGTATTCACGCGGTATGGGATAAACCATTGAGGTGTATAATATGCAACACCtcatttaaaactaaatatatGATACATTGTCATATGAACAAGCACAAGGGTGTGGAAAATGCCTTTGCTTGCGACAAGTGCGATATGAGGTTCGATACAGATAAAAAACTGGAGGACCACTTTCGAAAACATGAGTCTGAAGTCGATTCTGACAGTCCACACGGTTGCACGATTTGCggtaaatcaatttcaaagagATCGTTGAGGAGGCATTATCTTACAGTACATTGTTCGGTTATCCCCAGTAGGAAAAGAAAGTTCGACTGTGATGGATAA
Protein Sequence
MPMKHCASRTCLNTSYTKPLLKFFPFPKSEKFAKAWAEACKSPELLNKTMDQLTRLYLCAEHFEDKCFTDPLRKTTLVKWNNVYSMPTKFKHNKPEDSAANVIRRSVLYETNPELKLLKESSKSNYMKICRFCLKFTVTLVPIYGNYSFYQPLIIKLRPFGICIKENDGLPALICRTCAAKLLLVVETLEQFHDSEQKLKLALCTDLSTINDQAKIVHEIVSNNDRNESSQNEISPPESPNSQQNRQKEPDNENLENRNSLQVENIEVNEESSQNLVKMEVMDEENNTSEPYPIQINSPIIKQELEIDDVPPTNAENSKETSCQQSVSIEFQDCETTSTEKERMSTALENDPLSDESYKHSCKYCGLFFAHKVFLTRHVENKHKNVELIAQSIIKSRTKEYKCTVCQGVVKSSLAYLSHLKMHAAATPGLELSELRTEAFSTTLKMNSSIPVKIVGQTDDQAENQTKGPPRKIQKVGILKNNIQSLFECDLCGLSFFKKNELLLHVQTHKSARPEISTYINKPFRLEMGNVAQVQTKRTKEVNIAEEENISYPESEILFVNIPVKNEEEIPIIDLEEDSCSKNQIIQNPDENKEQKGEENGNMNDLVERLQNSEDSGSNLKAAIEMELDDREIVMCSQCSAVFATKAGMIKHFQKQHGNDPLALKTYKMVKIDRTYTCGICKISFGTKKGYETHLRIHMSTNLSLVNKVCDICGYDTRNENMFRFHMDSHIKKSYEENKLKKLQVFGLNLKDLKCTVCKEKFNTTSMLVTHMSSAHLVSCKKCNEEFQTQEKLNIHMREIHQESEYICNICGDDFDEQESIYRHIISHVKKKANCIHAVWDKPLRCIICNTSFKTKYMIHCHMNKHKGVENAFACDKCDMRFDTDKKLEDHFRKHESEVDSDSPHGCTICGKSISKRSLRRHYLTVHCSVIPSRKRKFDCDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01390590;
90% Identity
iTF_01394411;
80% Identity
iTF_01394411;