Sgif005029.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000585.1:1025-3638[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.2e-05 0.0045 18.2 3.0 1 23 198 221 198 221 0.95 2 12 0.035 4.8 8.6 0.3 1 23 239 261 239 261 0.98 3 12 7.6e-05 0.01 17.0 0.7 1 23 325 347 325 347 0.98 4 12 0.0027 0.37 12.1 0.1 2 23 473 495 472 495 0.96 5 12 4.7e-05 0.0065 17.6 0.5 1 23 514 536 514 536 0.99 6 12 0.13 18 6.8 0.7 2 23 547 568 546 568 0.94 7 12 0.00017 0.024 15.9 0.6 2 23 592 614 591 614 0.96 8 12 7.8e-05 0.011 17.0 0.4 2 23 617 639 616 639 0.95 9 12 0.016 2.2 9.7 0.2 1 23 644 666 644 666 0.97 10 12 3.9 5.5e+02 2.2 4.6 2 23 683 704 682 704 0.92 11 12 0.0031 0.44 11.9 0.8 1 23 711 733 711 733 0.97 12 12 0.077 11 7.5 0.7 3 23 745 765 745 765 0.97
Sequence Information
- Coding Sequence
- ATTTGCATAAAAGAAAACGATGGATTACCCGCACTTATTTGTCGGACTTGTGCGGCAAAATTATTATTAGTCGTCGAAACTTTGGAACAATTTCACGATTCAGAACAAAAATTGAAATTAGCATTATGGACAGACCTAAGCACAATAAACGACCAAGCGAAAATAGTAGATGAAATTGTTTCAAATAATGATAGCAATGAATCGAGCCAGAATGAAACTTCTCCAACAGAGTCCCCAAATTCTCAGCAAAATTGGCAAAAAGAACCGAATAATGAAAATTTGGATAGGAGAAATAGCCTTCAAGTCGAAAGCATAGAAGTTAACGAAGAAAGCAGTGAAAACTTAGTAAAAATGGAAGTGATGGATGAAGAAAATAACACCTACGAACCCGATCCAATTCAAATTATCTCTCCAATCATAAAACAAGAGCTTGAAATTATTGATGTTCCTACGAATGCAGAAAATTCTAAAGAAACTCCATACCAACAGCCAGTATCCATCGAATTCCAAGACTGTGAAACAACCAGTACTGAAAAAGAACGATTGTCCACTGCTCTTGAAAATGATCCACTCAGTGACGAATCCTACAAGCATGTTTGCAAATATTGTGGTCTCTTTTTTGCCAGAAAAGTGTTTTTGAAGAGGCATATGGAGAATAAACACAAAACTGTTGAACTTATCGCAGAAAATATTATCAAATCAAGAACGAAAGAATACAAATGCACAGTATGTCAGGGCGTGGTAAAAAGTTCCCTAGCATACCTTTCCCATTTAAAAATGCACGCCGCTGCAACTCCAGGCCTCGAACTTTCAAAACTAAAAACCGAAGCTTTTTCAACTACTCACAAGATGAACTCCTCAATCCCAGTTAAAATTGTAGATCAAACAGATGACCAAGCAGAAGACCAAACAAAAAGACCGCGCAGAAAAATTCAAAAAGTTGGTATTCTCAAAAAGAACATCCAAAGTCTTTTTAAATGCGATCTTTGTGGTCTTTCCTTCTTTAAAAAGAATGAACTGCTTTCACATGTAGAGACTCATAAATCTGCAAGACCTGAAATCAGTACATATATCAATAAACCCTTTCGCCTCGAGATGGGGAATGTAGCACAAGTACAAAATAAAGGAATAAAAGAGATAAACATTGATGAAGAGGAAAATATATCTTTTCTTCAGTCCGAAATATTATTTGTAAACATCCCTATAGAAAACGAGGAAGAAATTCCCATCATTGATCTGGAAGAAGACTCTTGTTCCGAAAATCAAATTATTCAAAATCCTGACGAAAATGAAGAGCAGAAAGGTGAGGAAAATGGATACATGAATTATTTGGCTGAACTCTCGCAGAATTCAGAGGACTCTGAATTTAATTTAAAAGCGGCGATTGAGATGGAACTCGATGACAGAGAAATTGTCATGTGCTCGCAATGCTCAGCAGTTTTTGCGACGAGAGCTGGAATGATTAAACACATTCAAAAGCAGCATGGCAATGATCCAATGGCCCTAAAAACTTACAAAATGGTAAAAATAGATGGCACATATACTTGTGGAATTTGTAAGATCAGTTTTGGAACGAAAAAGGGTTATGAGACACATCTAAGGATTCATATGAACACTAATTTGTCTTCAGTTAATAAAGTTTGTGACATTTGTGGCTATAATACGAGGAATGAGAATATGTTTAGGTTTCACATGGATAGCCACATGAAGAAATCCTACGAGGAAAATAAACTTAAGAAGCTTCAAGTGTTTGGTCTCAATCTCAAAGATCTAAAGTGTACCGTTTGCAAGGAACAATTTAACACAACTTCGATGCTGGTGACTCATATGAGTTCCGCACACTTGGTTTCATGTAAACAATGTAACGAGGAATTCCAGACACAAGAAAAATTGAACATTCACATGAGAGAGATTCATCAAGAATCAGACTACATTTGCAAAATTTGTGGAGATTACTTTTCTGAGCAGGAGAGCATTTACAGGCACATAGTTTCACATGTGACAAAAAAAGCTAATTGTATTCACGCCGTATGGGATAAACCATTGAGGTGTATAATATGCAACGCCTCGTTTAAAACTAAATATATGATACATTGTCATATGAACAAACACAAGGGAGTGCAAAATGCCTTTGCTTGCGACAAGTGCGATATGAGGTTCGATACAGATATAAAACTTGAAGACCACTTTCGAAAACATGAATCTGAAGTCAATTCTGAAAGTCCAAAAGGTTGCATGATTTGCGGTAAATCTATTTTAAAGAGATCGTTGAAGAGGCATTATCTCACAGTACATTGTACGCTTATCCCGAGTAGGAAAAGAAAGTTCGACTCTGATGGATAA
- Protein Sequence
- ICIKENDGLPALICRTCAAKLLLVVETLEQFHDSEQKLKLALWTDLSTINDQAKIVDEIVSNNDSNESSQNETSPTESPNSQQNWQKEPNNENLDRRNSLQVESIEVNEESSENLVKMEVMDEENNTYEPDPIQIISPIIKQELEIIDVPTNAENSKETPYQQPVSIEFQDCETTSTEKERLSTALENDPLSDESYKHVCKYCGLFFARKVFLKRHMENKHKTVELIAENIIKSRTKEYKCTVCQGVVKSSLAYLSHLKMHAAATPGLELSKLKTEAFSTTHKMNSSIPVKIVDQTDDQAEDQTKRPRRKIQKVGILKKNIQSLFKCDLCGLSFFKKNELLSHVETHKSARPEISTYINKPFRLEMGNVAQVQNKGIKEINIDEEENISFLQSEILFVNIPIENEEEIPIIDLEEDSCSENQIIQNPDENEEQKGEENGYMNYLAELSQNSEDSEFNLKAAIEMELDDREIVMCSQCSAVFATRAGMIKHIQKQHGNDPMALKTYKMVKIDGTYTCGICKISFGTKKGYETHLRIHMNTNLSSVNKVCDICGYNTRNENMFRFHMDSHMKKSYEENKLKKLQVFGLNLKDLKCTVCKEQFNTTSMLVTHMSSAHLVSCKQCNEEFQTQEKLNIHMREIHQESDYICKICGDYFSEQESIYRHIVSHVTKKANCIHAVWDKPLRCIICNASFKTKYMIHCHMNKHKGVQNAFACDKCDMRFDTDIKLEDHFRKHESEVNSESPKGCMICGKSILKRSLKRHYLTVHCTLIPSRKRKFDSDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394411; iTF_01394635; iTF_01392268; iTF_01391471;
- 90% Identity
- -
- 80% Identity
- -