Sumb019717.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- Sall1
- Assembly
- GCA_900474325.1
- Location
- UCOK01020059.1:23418-27942[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8.6 9.9e+02 1.1 0.8 2 11 381 390 380 402 0.85 2 16 4.5 5.2e+02 2.0 1.4 1 10 443 452 443 465 0.70 3 16 0.086 9.9 7.4 0.5 2 23 473 495 472 495 0.91 4 16 0.0022 0.25 12.4 3.3 1 23 501 523 501 523 0.98 5 16 0.0052 0.6 11.2 3.9 1 23 529 551 529 551 0.98 6 16 2.4e-06 0.00028 21.7 0.8 2 23 558 579 557 579 0.97 7 16 0.018 2.1 9.5 0.0 2 21 591 610 590 611 0.93 8 16 1.3 1.5e+02 3.6 7.1 1 21 631 651 631 653 0.95 9 16 0.0038 0.44 11.7 0.2 1 23 659 681 659 681 0.95 10 16 0.39 44 5.3 2.5 1 21 700 720 700 721 0.93 11 16 0.35 40 5.5 0.8 3 23 758 778 756 778 0.95 12 16 4.2e-05 0.0048 17.8 3.7 2 23 788 809 787 809 0.97 13 16 0.0078 0.9 10.7 2.2 1 23 815 837 815 837 0.97 14 16 1e-05 0.0012 19.8 0.2 1 23 843 865 843 865 0.97 15 16 1.2e-05 0.0014 19.5 2.2 1 23 871 893 871 893 0.98 16 16 1.8e-06 0.00021 22.1 1.3 1 23 899 921 899 921 0.99
Sequence Information
- Coding Sequence
- ATGAAAATCGTAATGAGAGATTCAAATGGTGAATTTATCGAAATTCCTATAATTGATAAAAGTGCTTGCAGAAGAATTCAACttgaaaatggaataaaagataattttacaaaCTCACCGCAAGCAGTTGATCAAACTATTGATAGCGTTATTCCTGCTTTATCaggaaataataaacattCCAAGGCTTTTAATAAAGCAAACTTGCCATCAGAAAAAAGGAAGTTAGAActagatgaaaatgaaaacacAAATATCCAATTCATTTTCCCTGAATTAACGAATTTGGAGGCACTCGAAAATAATGAAGTTCTATTTACAGATCGAGCCGGAATCGATCACTCTGATCTTCCTGATGGTGCAAATATGCCTAAGAAGAATGAAACCAATGGACTGGAAGaatatcttcatttttacGATATTGAAATGGAAGAATATCAGTCTCAGCTTTCCAAGgaattggaatttgaaaaagaagtaGCTGAAGAATTAAACTTAATCGCAAGAAGTGATCTTTTTTCACCTCTATGTCGACTTTGTGCAAATCAAAGTGAAGAAATGCTCTCTATTTTTGGATCAGCGCAAATAGAAAAAGACATAGCAGAGAAAATTAACAGATATTTACCAATTAAAGTGCAGAAGAGCGATACcctttccaaaaatatttgccACCCGTGTCTTGAAAAACTGGACttaattcacaatttttacaaatcagTATCAGAATCCGAAGCAACTTTTCTGAAAGCTGaagataatattttagaaaaatcttcGACACCTATACAAGTTGACAAAATATCTGCGAATTCTGTAATTTATACTCAGCCAGCGAAAAATTTTTCCGACACTTTGGACACTGAAGTTATTAATTCTGGAGAAATTCTCTATAGCGAGACGATAAAGGAAAATGATTTCGACTTCATCGAGAATGACGTGCAAGTCGAAGATAATTCTGAggctttcaatattttaagcgaagtgatatatgaaaatgaatttgaaataatcgAGAAGAATGACGTTCAAGTCGAAGATAATTCTGacgttttaaaagtttttaacgAAACTGTAGATAATTTCGAGGAAGATGTTTCTAACGAAGCCAGTGAAGATTCTTCCAATATCACTCCATCGTTAAGATGTCGGATTTGTAAcgagaaattttacggtatGAGGCAGTGTTATCTTCACTCAGCCTCTCATTCCTCCAAGAATTATTACCCTTGTAGTCTTTGTGAAAGTGACTCGCCTTCTCTGGAAAAATGGAGAGAACATTTTACAATACATAGCACTAGTAAATTACATGGAAAAAGAGTGTTGAATTACGAATGCGAAATTTGTAAGAAGAAACACGTTTCCGAGGCAAGACTGAAGTTTCACCTTCAATTCCATGAGCCTGGTGTCAGGCCTTGCTACTGTGAAATATGCGATAAATTTCTTGCTTCCGAGTCGGTGCTTTATAATCATTCAATAATGGTCCACatgaagtttagggaattttgcTGTGATATATGCGGCAGTATATTCAGATCAGCTCACCGGTTGGATGTTCATCAACGAAAACATAAAAACGAAAGACCCTATGAGTGTAATATTTGCTCCAAACGATTCCTATCAATGGATTGTCTCACAAGACACAGAAAACTTCATCTTCCTAATAAACCTCTTCAATGTGAGGAATGTGGCAAGCGATTTGACCGAACTAATTCTCTCACAAATCATCTTCTCACTCATCAAGTTGACGCCAAGCAGTCGATGATCTGCCAGGTTTGCAATCTGTGCAATGAAGTTTTCTTTAATGCTTCTGAAGCCGAATCTCATCTTAAAATCTGTTACGTATCAGAAAACGATTCAATTGAGATTGAAGAGAAGAATCTCTTCGCTGTCTACagATGTGAATTTTGTCAGCGATGTTACACCTCCATCGACTTTGTGCAGAATCATCAAAAATGTCACTCAGGCCCCACGCCTTATATCTGCACAATCTGTAATGTGACATTTGCAACTTACAATCAAGTAATGGCACACAAAAGCGCTCACAGAAAATTAGCTCCAGATCTTCAGTTGAAAGAGAACACAACCATCACAAAGTTCTTCTTTTGCGAATACTGTGAGAAAGAATTTCTACACTTCACTAACATGAATTTACATAGGAGGTCTTGTgccaagactaaaaactgtaCTTGTTATTGTTGCTCTTCCATGTTCTCAAGCCAATTGGAATTGCGTAAACATAAGACAAGAAAGGAACCTGGTGAGAACTGGGCCTGTGATAATTGCGAAATTACCTTTGGTAACTTTTGTGGTTTTACATCGCATAAAGAGATTCATACTAAAGCACAAGATGGGAAGCTTTTAAAGTGCTCTTTTTGCGGAAAAGACTTTCAACaaaaatcttgTCTGAATATTCACTTAAGAAGTCACACCGGTGAAAAACCTTTCGCCTGTGATTTATGTGATAAGGCCTTCAGTATTAAATGCGATAGAGATAATCATCGGAGGACTCACACTGGAGAACGTCCCTTTAAATGCACGATTTGTGATAAGGCATTTTCGAATCCACCTAGACTTCGAGAACACGCACTATCTCATTCAGATCGTCGGCCTTATCCGTGTCATATTTGTaatcaaagttttaaaaggGCCAGCACAAGAAAAATGCATATGCTTATTCATACTAAAGAGAAACCCTATCAGTGCGATATTTGTGGTATCAATTTTCGAAGATCAGGAGATATGAAGAGGCACAAAAAAAGGCATAATTCTacgcaattttaa
- Protein Sequence
- MKIVMRDSNGEFIEIPIIDKSACRRIQLENGIKDNFTNSPQAVDQTIDSVIPALSGNNKHSKAFNKANLPSEKRKLELDENENTNIQFIFPELTNLEALENNEVLFTDRAGIDHSDLPDGANMPKKNETNGLEEYLHFYDIEMEEYQSQLSKELEFEKEVAEELNLIARSDLFSPLCRLCANQSEEMLSIFGSAQIEKDIAEKINRYLPIKVQKSDTLSKNICHPCLEKLDLIHNFYKSVSESEATFLKAEDNILEKSSTPIQVDKISANSVIYTQPAKNFSDTLDTEVINSGEILYSETIKENDFDFIENDVQVEDNSEAFNILSEVIYENEFEIIEKNDVQVEDNSDVLKVFNETVDNFEEDVSNEASEDSSNITPSLRCRICNEKFYGMRQCYLHSASHSSKNYYPCSLCESDSPSLEKWREHFTIHSTSKLHGKRVLNYECEICKKKHVSEARLKFHLQFHEPGVRPCYCEICDKFLASESVLYNHSIMVHMKFREFCCDICGSIFRSAHRLDVHQRKHKNERPYECNICSKRFLSMDCLTRHRKLHLPNKPLQCEECGKRFDRTNSLTNHLLTHQVDAKQSMICQVCNLCNEVFFNASEAESHLKICYVSENDSIEIEEKNLFAVYRCEFCQRCYTSIDFVQNHQKCHSGPTPYICTICNVTFATYNQVMAHKSAHRKLAPDLQLKENTTITKFFFCEYCEKEFLHFTNMNLHRRSCAKTKNCTCYCCSSMFSSQLELRKHKTRKEPGENWACDNCEITFGNFCGFTSHKEIHTKAQDGKLLKCSFCGKDFQQKSCLNIHLRSHTGEKPFACDLCDKAFSIKCDRDNHRRTHTGERPFKCTICDKAFSNPPRLREHALSHSDRRPYPCHICNQSFKRASTRKMHMLIHTKEKPYQCDICGINFRRSGDMKRHKKRHNSTQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392249; iTF_01390574;
- 90% Identity
- iTF_01392249;
- 80% Identity
- -