Sgif028195.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus gifuensis
Gene Symbol
-
Assembly
GCA_904066015.1
Location
CAJFCO010018323.1:51946-60343[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.5 6.2e+02 2.0 1.4 1 10 441 450 441 463 0.70
2 16 0.19 26 6.3 1.2 2 23 471 493 470 493 0.88
3 16 9.3e-05 0.013 16.7 2.1 1 23 499 521 499 521 0.98
4 16 0.0053 0.74 11.2 4.1 1 23 527 549 527 549 0.98
5 16 1.6e-06 0.00022 22.3 1.2 2 23 556 577 555 577 0.97
6 16 0.0034 0.48 11.8 0.5 2 23 589 611 588 611 0.96
7 16 0.012 1.7 10.0 5.1 1 23 629 651 629 651 0.99
8 16 0.01 1.4 10.3 0.2 1 23 657 679 657 679 0.95
9 16 0.39 53 5.3 2.5 1 21 698 718 698 719 0.93
10 16 7.7 1.1e+03 1.2 1.9 3 20 728 745 726 747 0.85
11 16 0.014 1.9 9.9 1.0 3 23 756 776 754 776 0.95
12 16 4.2e-07 5.8e-05 24.1 2.1 1 23 785 807 785 807 0.99
13 16 0.09 12 7.3 2.2 1 23 813 835 813 835 0.95
14 16 4.8e-06 0.00066 20.8 0.6 1 23 841 863 841 863 0.98
15 16 7.1e-05 0.0099 17.1 1.7 1 23 869 891 869 891 0.98
16 16 2.8e-06 0.00039 21.5 0.8 1 23 897 919 897 919 0.99

Sequence Information

Coding Sequence
ATGAAAATTTTAATGAGAGATTCAAATGGTAAATTTGTCGAAATTCCTATAAATGATAAAAGTGCTTGCAGAAGAATACAACTTGAAAATGGAATAAAAAGTGATTTTACAAACTCACCGCAAACAGTTGATCAAACTAATCACAGCGTTATTCCTGCTTTATCAGGAAATAATAAACGCTCAAAGGCGAAAAAGGGAAAAAAGGAAAAAGGGAAGTTAGAAGTAGATGATGATGAAAACACAAATATCCAAGTCATTTTCCCTGAATTAACGAATTTGGAAACACTCAAAAATAATGAAGTTCTAATTACAAATCGAGCCGGAATCGATCACTCCGATCTTCCTAATGGTGTAAATATGTCTAAGAAGAATGAAACTAATGGACTGGCAGAATATCTTCATTTGGACGATATTGAAATAATGGAAGAATATCAGTCTAGGGTTTCCAAGGAATTGGAATTTGAAAAAGAAGTACCTGAAGAATTAAACTTAATCGCAAGAAGTGATCTTTCTTCACCTTTGTGTCGACTTTGTGCAAGTCAAAGTGAAGAAATGCTCTGCATTTTTGGATCAGCGCCAATAGAAAAAGACATAGCAGAGAAAATTAACAAATATTTACCAATTAAAGTGCAGAAGAGCGATACCTTTCCCAGAAATATTTGCCACCCGTGTCTTGAAAAACTAGACTTAATTCACAATTTTTGCAAATCAGTATCAGAATCCGAAGCAATTTTTCTGAAAGCTGAAGATAATCTTTTAGAAAAATCTTCGACACCTATACAGGCTGAGAAAATATCTGCGAATTCTGTAATTTATACTCAGCCAGCGAAAAAGTTTTCCGACACTTTGGACACTGAAGTTATTAATTCTAGAGAAATTCTCTATAGCGAGACGACAAAGAAAAATTATTTCGATGTCATCGAGAATGATGTACAAGTCGAAGATGATTCCGAGGCTTTCAATATTTTGAGCGAAGTGGTATATGAAAATGAATTTGAAATAATCGAGGAGAATGACGTTCAAGTCGAAGATAATTCTGACGTTTTAAAAGTTTTTAACGAAACTGTAGATAATTTTGAGGAAGATCTTTCTAACGAAGCCAGTGAAGTTTCTTCCAATATCACCCAATTGTTAAGATGTCGGATTTGTCACGCGAAATTTTATGGTATGAGGCAGTGTTATCTTCACTCAGCCTCTCATTCCTCCATGAATTATTACCCTTGTAGTCTTTGTAAAAGTGACTCGCCTTCTGTGGAAAAATGGAAAGAACATTTTACAATACATAGCACTAGTAAATTACATGGAAAAAAAGTGTTGAATTACGAATGCGAAATTTGTAAGAAGAAACACGTTTCCGAGGCAAGACTGAAGTTTCACCTTCAATTCCATGAGCCTGGTGTCAGACCTTGCTACTGTGAAAAATGCGATAAATTTCTGGCTTCCGAGTCGGTGCTTTATAAACATTCAGTAATGGTCCACATGAAGTTTAGGGAATTTTGCTGTGATATATGCGGCAGTATATTCAGATCACAACAGCAGTTGGATGTTCATCAACGAAAACATAAAAACGAAAGACCCTATGAGTGTAATATTTGCTCTAAACGATTCCTATCAATGGATTGTCTCAGAAGACACAGAAAACTTCATCTACCTAAGAAACCTCTTAAGTGTGAGGAATGTGGAAAGCGATTCGACCGAACTAATTCTCTCACAAAACATCTTCTCACTCATCAAGTTGAAGCTAAGCAGTCGATGATCTGCCAGGTTTGCAATCTGTGCAATGAAGTTTTCTTTAATGCTTCTGAAGCCGAATCTCATCTTAAAATCTGTCACGTATCAGGAGACGATTCAATTGAGATTGAAGAGAAGAATCTCTACGCTGTCTACAGATGTGAATTTTGTCAGCGATGTTACACCTCCATCGATTTTGTGAAGAATCATCAAAAATCTCACTCAGGTCCCACGCCTTATATCTGCACAATCTGCAATGTGACCTATGCAACTTACAATCAAGTAACGGCACACAAAAGCGCTCACAGAAAATTAGTTCCAGATCTTCAGTTGAAAGAGATTACAACCATTACAAAGTTCTTCTTTTGCGAATACTGTGAGAAAGAATTTCTACACTTCACTAACATGAATTTACATAGGAGGTCTTGTGCCAGGGCTAAAAACTGGAGTTGTTACTGTTGCTCTTCCATGTTTTCAAGCCAACTCGAATTGCGTAAACATAAGACAAGAAAGGAACCTGGTGAGAACTGGGCCTGTGATAATTGCGAAAAGACTTTTGGTAACTTTTGTGGTCTTACATCGCATAAAGAGATTCATACTAAAGCACAAGATGGAAAGCTTTTTAAGTGCTCTTATTGCGGAAAAGACTTTCAACAAAAAGCTCATCTGATTATTCACATAAGAAGTCACACCGGTGAGAAACCTTTCGCCTGTGATTTATGTAATAAGGCCTTCAGTATTAAATGCGATAGAGATTATCATCGGAGGATTCACACTGGAGAACGTCCCTTTAAATGCACCATGTGTGATAAGGCATTTTCGAATCCAGCTAGACTTCGAGAACACACACTAAGTCATTCAGATTATCGGCCTTATCCGTGTCATATTTGTAATCAAAGTTTCAAAAAGTCCAACGCAAGAAAAGTTCACATGCTTATTCATACTGGAGAGAAACCCTATCAGTGCGATATTTGTGGTATCAATTTTCGAAGATTGGGAGATATGAGGAGGCACACAAAAAGACATGCTTTGGAATTCCAGGTCATGACAACGAGTTGA
Protein Sequence
MKILMRDSNGKFVEIPINDKSACRRIQLENGIKSDFTNSPQTVDQTNHSVIPALSGNNKRSKAKKGKKEKGKLEVDDDENTNIQVIFPELTNLETLKNNEVLITNRAGIDHSDLPNGVNMSKKNETNGLAEYLHLDDIEIMEEYQSRVSKELEFEKEVPEELNLIARSDLSSPLCRLCASQSEEMLCIFGSAPIEKDIAEKINKYLPIKVQKSDTFPRNICHPCLEKLDLIHNFCKSVSESEAIFLKAEDNLLEKSSTPIQAEKISANSVIYTQPAKKFSDTLDTEVINSREILYSETTKKNYFDVIENDVQVEDDSEAFNILSEVVYENEFEIIEENDVQVEDNSDVLKVFNETVDNFEEDLSNEASEVSSNITQLLRCRICHAKFYGMRQCYLHSASHSSMNYYPCSLCKSDSPSVEKWKEHFTIHSTSKLHGKKVLNYECEICKKKHVSEARLKFHLQFHEPGVRPCYCEKCDKFLASESVLYKHSVMVHMKFREFCCDICGSIFRSQQQLDVHQRKHKNERPYECNICSKRFLSMDCLRRHRKLHLPKKPLKCEECGKRFDRTNSLTKHLLTHQVEAKQSMICQVCNLCNEVFFNASEAESHLKICHVSGDDSIEIEEKNLYAVYRCEFCQRCYTSIDFVKNHQKSHSGPTPYICTICNVTYATYNQVTAHKSAHRKLVPDLQLKEITTITKFFFCEYCEKEFLHFTNMNLHRRSCARAKNWSCYCCSSMFSSQLELRKHKTRKEPGENWACDNCEKTFGNFCGLTSHKEIHTKAQDGKLFKCSYCGKDFQQKAHLIIHIRSHTGEKPFACDLCNKAFSIKCDRDYHRRIHTGERPFKCTMCDKAFSNPARLREHTLSHSDYRPYPCHICNQSFKKSNARKVHMLIHTGEKPYQCDICGINFRRLGDMRRHTKRHALEFQVMTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01394625;
90% Identity
-
80% Identity
-