Sumb001240.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01006516.1:203174-205066[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.1e-05 0.0047 17.8 0.4 1 23 67 90 67 90 0.95 2 11 1e-06 0.00012 22.9 0.7 1 23 104 127 104 127 0.95 3 11 1.9e-05 0.0021 18.9 0.8 2 23 135 157 134 157 0.96 4 11 0.078 8.9 7.5 3.8 1 23 163 185 163 185 0.97 5 11 0.00015 0.017 16.1 1.1 1 23 191 213 191 213 0.98 6 11 0.00019 0.022 15.7 4.5 1 23 219 241 219 241 0.97 7 11 0.0049 0.56 11.3 2.9 1 23 247 269 247 269 0.97 8 11 0.022 2.6 9.2 0.3 1 20 276 295 276 298 0.93 9 11 0.00016 0.018 16.0 0.4 2 23 305 326 304 326 0.96 10 11 1.8e-06 0.00021 22.1 1.3 1 23 332 354 332 354 0.98 11 11 0.00029 0.033 15.2 5.9 3 23 362 382 360 382 0.98
Sequence Information
- Coding Sequence
- atggaCATTGAAAATAACCCAAAAAAGaTTTCATTTAAAGACGATCAAGACTCACGAATCCGCAGCTTTATCAAATCTGACCCACTCAAGAGCAAGTTAGATCACGAAAAGAGGAATTTGAGTAGAGAAAAGAGTGAATCAGATATTAGTAATGATCCTGATGTCAAAGATTCTAAAACCAACTTCAATAAGAGACCTTATGAATGTGAAATATGTAGGAAAACTTATGCCAGACTAGGAAGTCTTTACCGACACGTTGACAAATCCCATTCAATTCAATCTCATGATAAAATACTCACAAAGCAGACTTTTGAGTgtgatatttgtaaaaaaattttcacaaagcgtgagaatttaagaaatcacATAATTTATCTTCACACTGAAAATGGCATAACTAAAAAGTGTCCGATTTGCGCAAAAAATTTCGGACGTGCCTACTATTTGACGAGACACTTGAAGAATACCCATTTTGGCATTAAACCCTTTGAATGTCAGACTTGTAAGGCtcgttttttgaaaaagtgtgACTTACAGTCGCATATGTTCATCCACACGAAAATTCAACCTTTTGTGTGTGACATTTGTTCCAAAggttttctgaaaaaatatttactccaAGTTCATAAAAGAACACACTTGACTGAAAAGCCCCATAAGTGTACTATGTGTGATAAAAGCTTTGTTCACATGACTAGTCTTGATAATCATACTCGCGGTCACTTAGGGGAAAAGCCTTTTGAGTgtgatatttgtaaaaaaagattcttaaGACGTTGTAGTATAAGAAGACACATACTTGGACATGTGGAAAGTGGGCAATCTTTTAAGTGTAAATTTTGTAGCAAGATTTTGGGAAGTTCCCTCGGTTTACAGAGACACATTCCCATACACTCAAAAATTAAACGTTTACAATGTACAGTTTGCAAGCAGCGTTTTTGGAGAAGTGACGAGTTGAAGGCCCATATGTACATCCACACGAATACAAGACCTTTTGTTTGTGACATCTGTTCCAAAGGTTTTCGGAGGAAGTTTGGTCTGACAGCTCATAAAAAGACACACGTGCCTGAGACGCCCTACGGGTGTAAAATATGTCATAGAAAATTCAGCAAAAAAGCTCAGGTCAAAACGCACATGCACACACACATGGAACAAGCGccttctaaaaatattaatgttaatttgAATATGATGAAAATGAGGCCGAGAAAGAATaagttaaaaatcgaatttgaTCAGGATGATGAAACGACTTCAATTAGTGAAATACAAAGAACTGATTGCATTCTCAAGACTGATATTGAAAGTGAAATACTAGATGAAGGTGATTCTgcattattttctattaaaagtgAATCTTATGAAAAACACTGTTTAAATTCCGAAATAGAATTTGAGAGTGTAAAGATAGAATCTTATCATTAA
- Protein Sequence
- MDIENNPKKISFKDDQDSRIRSFIKSDPLKSKLDHEKRNLSREKSESDISNDPDVKDSKTNFNKRPYECEICRKTYARLGSLYRHVDKSHSIQSHDKILTKQTFECDICKKIFTKRENLRNHIIYLHTENGITKKCPICAKNFGRAYYLTRHLKNTHFGIKPFECQTCKARFLKKCDLQSHMFIHTKIQPFVCDICSKGFLKKYLLQVHKRTHLTEKPHKCTMCDKSFVHMTSLDNHTRGHLGEKPFECDICKKRFLRRCSIRRHILGHVESGQSFKCKFCSKILGSSLGLQRHIPIHSKIKRLQCTVCKQRFWRSDELKAHMYIHTNTRPFVCDICSKGFRRKFGLTAHKKTHVPETPYGCKICHRKFSKKAQVKTHMHTHMEQAPSKNINVNLNMMKMRPRKNKLKIEFDQDDETTSISEIQRTDCILKTDIESEILDEGDSALFSIKSESYEKHCLNSEIEFESVKIESYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392234; iTF_01390553; iTF_01391426;
- 90% Identity
- iTF_01392234; iTF_01391426; iTF_01390553;
- 80% Identity
- -