Sito013630.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000125.1:767653-769532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.3e-05 0.013 16.7 1.4 1 23 91 114 91 114 0.95 2 11 2.4e-06 0.00032 21.7 0.9 1 23 128 151 128 151 0.95 3 11 1.6e-05 0.0022 19.1 0.8 2 23 159 181 158 181 0.96 4 11 0.03 4.1 8.8 2.9 1 23 187 209 187 209 0.97 5 11 0.00064 0.087 14.1 1.7 1 23 215 237 215 237 0.98 6 11 3.8e-05 0.0052 17.9 3.7 1 23 243 265 243 265 0.98 7 11 0.0052 0.71 11.2 2.9 1 23 271 293 271 293 0.97 8 11 0.024 3.3 9.1 0.3 1 20 300 319 300 322 0.93 9 11 0.00017 0.023 15.9 0.4 2 23 329 350 328 350 0.96 10 11 1.9e-06 0.00026 22.0 1.3 1 23 356 378 356 378 0.98 11 11 0.00031 0.042 15.1 5.9 3 23 386 406 384 406 0.98
Sequence Information
- Coding Sequence
- ATGTTACATCGTTACCGAAGTGCGAATGACAACAAATCAACAAGAAAATATAATCTTTACATGATCCATATACACCTTCCATCATGTATTCCCACAATTTCATTAAAAGAGGATCAAGACTCACGGATCAGCGGCTTTATCAAATCTGACCCACTCGAATGCAAGTTAGATGACGAAAAGGGGAATTTGAGTGGAGAAAAGAGTCAATTAGACATTAGTAATGATCCTGATCTCAAGAAAGATTCTAAAACCAACTTCAATAAGAGACCTCATGAATGTGAAATATGTAGGAAAACTTATGCCAGACTAGGAAGTCTTTACCGTCACCTTGACAAATCCCATTCAATTCAATCTCATGATGAAATATTCACAAAGCAGTCTTTCGAGTGTGATATTTGTAAAAAAATGTTCACAAAGCGTGAGACTTTGAAAAATCACATAATTAATCTTCACACTGAAAATGGCATATCTAACAAGTGTCCGATTTGCGCAAAAAATTTCGGACGTGCCTACTATTTGAAGAGACACTTGAAGAATACCCATTCTGGCATTAAACCCTTTGAATGTCAGACTTGTAAGGCTCGTTTTTTGAAAAAATGTGATTTACAGGCTCATATGTTCATTCACACGAAAATTCAACCTTTTGTGTGTTACATTTGTTCCAAAGGGTTTCTGAAAAAATATTTACTCCAAGTTCATAAAAGAACACACTTGGATGAAAAGCCCCACAAGTGTACAATGTGTGATAAAAGTTTTGTTCACATGACTAGTCTTGATAATCATATACGCGGTCACTTAGGAGAAAAGCCTTTTGAGTGTGATATTTGTAAAAAAAGATTCTTAAGACGTTGTAGTATTAGAAGACACATACTTGGACATGTGGAAAGTGGACAATCTTTTAAGTGTAAATTTTGTAGCAAGATTTTGGGAAGTTCCCTCGGTTTACAGAGACACATTCCCATACACTCAAAAATTAAACGTTTACAATGTACAGTTTGCAAGCAGCGTTTTTGGAGAAGTGACGAGTTGAAGGCACACATGTACATCCACACGAATACAAGACCTTTTGTTTGTGACATCTGTTCCAAAGGTTTTCGGAGGAAGTTTGGTCTGACAGCTCATAAAAAGACACACGTGCCTGAGACGCCCTACGGGTGTAAAATATGTCATAGAAAATTCAGCAAAAAAGCTCAGGTCAAAACGCATATGCACACACATTCAGAACAAGCGTCTTCTGAAAATATTAATGTTAATTTGAATAGGATGAAAATGAGGCCGAGAAAGGATAAGTTAAAAATCGAATTTGATCAGGACAATCTTTCTGATGAAACGACTTCAATTAGTGAAATACAAAAAACTGATTGCATTCTCAAGACTGACCTTAAAAGTGAAATACTAGATGAAGGTAATTCTGCATTCTTTTTTATTAAAAGTGAATCTTGTGAAAAACACTGTTTAAATTCCGAAATAGAATTTGAAAGTGTAAAGATGGAATCTTATCATTAA
- Protein Sequence
- MLHRYRSANDNKSTRKYNLYMIHIHLPSCIPTISLKEDQDSRISGFIKSDPLECKLDDEKGNLSGEKSQLDISNDPDLKKDSKTNFNKRPHECEICRKTYARLGSLYRHLDKSHSIQSHDEIFTKQSFECDICKKMFTKRETLKNHIINLHTENGISNKCPICAKNFGRAYYLKRHLKNTHSGIKPFECQTCKARFLKKCDLQAHMFIHTKIQPFVCYICSKGFLKKYLLQVHKRTHLDEKPHKCTMCDKSFVHMTSLDNHIRGHLGEKPFECDICKKRFLRRCSIRRHILGHVESGQSFKCKFCSKILGSSLGLQRHIPIHSKIKRLQCTVCKQRFWRSDELKAHMYIHTNTRPFVCDICSKGFRRKFGLTAHKKTHVPETPYGCKICHRKFSKKAQVKTHMHTHSEQASSENINVNLNRMKMRPRKDKLKIEFDQDNLSDETTSISEIQKTDCILKTDLKSEILDEGNSAFFFIKSESCEKHCLNSEIEFESVKMESYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394589;
- 90% Identity
- iTF_01394589;
- 80% Identity
- -