Sumb019040.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01019583.1:337704-339726[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00011 0.012 16.5 2.6 3 23 74 94 74 94 0.99 2 12 0.0002 0.023 15.7 1.2 1 23 111 133 111 133 0.97 3 12 9.3e-06 0.0011 19.9 1.2 1 23 143 165 143 165 0.96 4 12 3.9e-07 4.5e-05 24.2 0.2 1 23 172 194 172 194 0.98 5 12 0.00012 0.014 16.3 0.8 1 23 200 222 200 222 0.98 6 12 1.1e-06 0.00013 22.8 2.5 1 23 228 250 228 250 0.97 7 12 8.1e-05 0.0093 16.9 3.0 1 23 256 278 256 278 0.98 8 12 3.2e-06 0.00036 21.3 2.3 1 23 285 307 285 307 0.98 9 12 5.2e-07 6e-05 23.8 1.1 1 23 313 335 313 335 0.98 10 12 1.6e-06 0.00018 22.3 0.5 1 23 341 363 341 363 0.98 11 12 0.00011 0.013 16.5 4.4 1 23 372 394 372 394 0.99 12 12 0.01 1.2 10.3 6.7 1 23 400 422 400 422 0.97
Sequence Information
- Coding Sequence
- atggacattcaaaataatacaaaatccGAGttTACATCAAATGAATTAGATTACGCATGGGAGGGTGTCATAATCAAATCTGAGCTTCCTGAGGATGATACAGTTGATCAAACCAATTTTAAGGAGGAGAAGAGTAAACTAACAAATCTTCCTAGCAAAGTAAAAGAAGGCACGTCTACCTTGAAATTGACTTCAGCAAAGCAACAAAGGGTTAATTGGTGTCATGAATgtcaaaaagaattcaaatctCTGAAAGGACTGAATATCCACTTAAAGATGCATGCTAATAGAAATGCTGCTAATAAAGGTAAAAACCCTGAAGATAAACTTTTCTACTGTGAAATTTGTAAGGCCAGTTATAAAACGCAAATGAAGCTTCTGAAACACGTTAAAGAGCATGCTAAAGTGCGCTTAAGACACAAGGGTTTCGAGTGCGATTATTGTAAGAAAACGTTCACAAACCGTCAGAGTATGAAATTGCATATAGCTGCTCACATGGCAGGTGGTGGACCTTACAAATGCACAATTTGTGCAAAAGCTTTTGTCAGATCCTACAGTTTGAAGGCACACATTTTGGTTCACGAAAACAAAAAACCCTTTGTTTGTGATATTTGCAACAAAGCTTTTCTGAGAATGTCCTActtaaataatcataaaaagatTCATTTAAGTGATAGGCCCCATGTGTGTAAAACTTGTGGTAAAAGATTTATTAGGATATACGATCTTAGAATTCATATGCGCTACCACACTGGAGAAAAACGTTTCGAATGCGATATTtgtcacaaaaaattcaagaaatatcAAACAATGAAAGTGCATATACTTGTTCATATGGGATTTTCCAAAAGTTACAAGTGTACAGTTtgttcaaaaaagttttcaaggtCCAACTATTTGAAAGAGCATTTACAAGGACACTCGGGGCATAGACCATACGAATGTGAAGTATGCAAAAAgacttttgttaaaaaatatactttaaattcacaTATGCTTATTCACCAAAAAATAAAGCCTTTCGTTTGTGAGATTTGTGGTAGAGGATTTGTGAAGTCATATTATCTAACGTCTCACAAAAGAGTGCATTCGGATTTAAAGGCTGACAGACCCTTTCAATGCGACATCTGTCAAAAAACGTTTACTTGTGCAAGCAAGCTCAAAGTTCACAAGCGTAGTCATACTGGAGTCAAACCCTTCGAATGCGAgttctgtaaaagaaaattcaagtatGAACATAGTTTTAAAACTCACAAAGTAACACATGAAAATCCTGACAATATACGTCCTGAGAAGTCTCCAACATTTGAGACAAACTTCGAAGATACAATGTTTCGCACGGTTTATTTGAATAGCTATCATAGTGGTAAATATCCAGGAAATATTTCTGAACAGACTGTGGTTGAAATTATACCGATCACTGTGCAGAACATTGATCTTAGGAGTGAAATGCAAAAAAAGGTGGGAACTACTGGACCTAAAGgctctaattttatttctgtgaAAAACGAGATTAGGGATAGAATAAGTTCCACTTACGAAATAGATGTTGAAGATGTCAAAGTAGAACTTAATGACGctgaaactaaatttaatgaaagatag
- Protein Sequence
- MDIQNNTKSEFTSNELDYAWEGVIIKSELPEDDTVDQTNFKEEKSKLTNLPSKVKEGTSTLKLTSAKQQRVNWCHECQKEFKSLKGLNIHLKMHANRNAANKGKNPEDKLFYCEICKASYKTQMKLLKHVKEHAKVRLRHKGFECDYCKKTFTNRQSMKLHIAAHMAGGGPYKCTICAKAFVRSYSLKAHILVHENKKPFVCDICNKAFLRMSYLNNHKKIHLSDRPHVCKTCGKRFIRIYDLRIHMRYHTGEKRFECDICHKKFKKYQTMKVHILVHMGFSKSYKCTVCSKKFSRSNYLKEHLQGHSGHRPYECEVCKKTFVKKYTLNSHMLIHQKIKPFVCEICGRGFVKSYYLTSHKRVHSDLKADRPFQCDICQKTFTCASKLKVHKRSHTGVKPFECEFCKRKFKYEHSFKTHKVTHENPDNIRPEKSPTFETNFEDTMFRTVYLNSYHSGKYPGNISEQTVVEIIPITVQNIDLRSEMQKKVGTTGPKGSNFISVKNEIRDRISSTYEIDVEDVKVELNDAETKFNER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391396; iTF_01390524;
- 90% Identity
- iTF_01390524;
- 80% Identity
- -