Basic Information

Insect: Synergus itoensis
Gene Symbol: -
Assembly: GCA_904066005.1
Location: CAJFCP010000098.1:375948-378065[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00012 0.016 16.4 2.6 3 23 74 94 74 94 0.99

2 13 8.9e-05 0.012 16.8 1.1 1 23 111 133 111 133 0.98

3 13 1e-05 0.0014 19.8 1.2 1 23 143 165 143 165 0.96

4 13 4.6e-06 0.00062 20.8 0.8 1 23 172 194 172 194 0.97

5 13 1.5e-05 0.002 19.2 0.7 1 23 200 222 200 222 0.98

6 13 0.00013 0.018 16.2 0.8 1 23 228 250 228 250 0.98

7 13 1.2e-06 0.00016 22.7 2.5 1 23 256 278 256 278 0.97

8 13 0.00038 0.052 14.8 3.8 1 23 284 306 284 306 0.97

9 13 3.4e-06 0.00047 21.2 2.3 1 23 313 335 313 335 0.98

10 13 5.6e-07 7.6e-05 23.7 1.1 1 23 341 363 341 363 0.98

11 13 1.7e-06 0.00024 22.2 0.5 1 23 369 391 369 391 0.98

12 13 0.00021 0.029 15.6 4.3 1 23 400 422 400 422 0.99

13 13 0.0033 0.44 11.9 5.1 1 23 428 450 428 450 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00012	0.016	16.4	2.6	3	23	74	94	74	94	0.99
2	13	8.9e-05	0.012	16.8	1.1	1	23	111	133	111	133	0.98
3	13	1e-05	0.0014	19.8	1.2	1	23	143	165	143	165	0.96
4	13	4.6e-06	0.00062	20.8	0.8	1	23	172	194	172	194	0.97
5	13	1.5e-05	0.002	19.2	0.7	1	23	200	222	200	222	0.98
6	13	0.00013	0.018	16.2	0.8	1	23	228	250	228	250	0.98
7	13	1.2e-06	0.00016	22.7	2.5	1	23	256	278	256	278	0.97
8	13	0.00038	0.052	14.8	3.8	1	23	284	306	284	306	0.97
9	13	3.4e-06	0.00047	21.2	2.3	1	23	313	335	313	335	0.98
10	13	5.6e-07	7.6e-05	23.7	1.1	1	23	341	363	341	363	0.98
11	13	1.7e-06	0.00024	22.2	0.5	1	23	369	391	369	391	0.98
12	13	0.00021	0.029	15.6	4.3	1	23	400	422	400	422	0.99
13	13	0.0033	0.44	11.9	5.1	1	23	428	450	428	450	0.97

Sequence Information

Coding Sequence: ATGGACATCCAAAATAATACAAAATCCGAGTTTACATCAAATGAACTAGATTACGCATGGGAGGGTGTCGTCATCAAATCTGAGCTTCCTGAGAATGATACAGTTGATCAAATCAATTTTAAGGAGGAGAAGAGTAAACTAACAAATCTTCCTAGCAAAGTGGAAGAAGGCACGTCTACTTTAAAATTGACTTCAGCAAAACAACAAAGGGTTAACTGGTGTCATGAATGTCAAAAAGAATTCAAATCTCTGAAAGGCCTGAACATCCACTTAAAAATGCACGCTAATAGAAATGCTGCAAATAAAGGTAAAAACTCTGAAGATAAACTTTTTTACTGCGAAATTTGCAAGGCCAGTTATAAAACGCAAATGAAGCTTCTGAAACACGTTAAAGTGCATGCTAAAGTGCGCTTAAGACACAAGGGTTTCGAGTGCGATTATTGTAAGAAAACGTTCACAAACCGTCAGAGTATGAAATTGCACATAGCTGCTCACATGGCAGGTGGTGGACCTTACAAATGCACAATTTGTGCAAAAGCTTTTGTCAGATCCTACAGTTTGAAGGTACATCTTCTATTTCACTCAGAAGATAAACCCTTTCAATGCAAAGTTTGTAGTCAGGGCTTTTATAGAAATAATGATTACCAGGCACACATGTTGGTTCACGAAAACAAAAAACCCTTTGTTTGTGACATTTGTAACAAAGCTTTTCTGAGGATGTCCTACTTAAATAATCATAAAAAGATTCATTTAAGTGATAGACCCCATGTGTGTAAAACTTGTGGTAAAAGATTTATTAGGATATACGATCTTAGAATTCATATGCGCTACCACACTGGAGAAAAACGTTTCGAATGCGATATTTGTCACAAAAAATTCAAGAAATATCAAACTATGAAAGTGCATATATTTGTTCATATGGGATTTTCCAAGACTTACAAGTGTACAGTTTGTTCAAAAAAGTTTTCAAGGTCCAACTATTTGAAAGAGCATTTACAAGGACACTCGGGGCATAGACCATACGAATGTGAAGTATGTAAAAAGACTTTTGTTAAAAAATATACTTTAAATTCACATATGCTTATTCACCAAAAAATAAAGCCTTTCGTTTGTGAGATTTGTGGTAGAGGATTCGTGAAGTCATATTATCTAACGTCTCATAAAAGAGTGCATTCGGATTTAAAGGCTGACAGACCCTTTCAATGCGACGTCTGTCAAAAAACATTTACTTGTGCAAGTAAGCTCAAAGTTCACAAGCGTAGTCACACTGGAGTCAAGCCCTTCGAATGCGAGTTCTGTCAAAGAAAATTCAAGTATGAACATAGTTTTAAAGCTCACAAAGTGACACATGAAAATCCTGACAATGTACCTCCTGAGAAGTCTCCAACATTTGCGACAAATTTCGAAAATACAATGTTTCGCACGGTTTATTTGAATAGCTATCATAGTGGTAAATATCCAGGGAATATTTCTGAACAGACTGTGGTTGAAATTATACCGATCACTGTGCAGAACATTGATCTTAGGAGTGAAATGCAAAAAAATGTGGGAAGCACTAAGTGTCTTGAAAAAACTATTGAACCTGAAATCTCTAATTTCATTTCTGTGAAAAACGAGATTAGTGATAGAATAAGTTCCACTTGCGAAATAGACGTTGAAGATGTCAAAGTAGAAATTAATGACGTTGAAACTAAATTTAATGAAAGATAG
Protein Sequence: MDIQNNTKSEFTSNELDYAWEGVVIKSELPENDTVDQINFKEEKSKLTNLPSKVEEGTSTLKLTSAKQQRVNWCHECQKEFKSLKGLNIHLKMHANRNAANKGKNSEDKLFYCEICKASYKTQMKLLKHVKVHAKVRLRHKGFECDYCKKTFTNRQSMKLHIAAHMAGGGPYKCTICAKAFVRSYSLKVHLLFHSEDKPFQCKVCSQGFYRNNDYQAHMLVHENKKPFVCDICNKAFLRMSYLNNHKKIHLSDRPHVCKTCGKRFIRIYDLRIHMRYHTGEKRFECDICHKKFKKYQTMKVHIFVHMGFSKTYKCTVCSKKFSRSNYLKEHLQGHSGHRPYECEVCKKTFVKKYTLNSHMLIHQKIKPFVCEICGRGFVKSYYLTSHKRVHSDLKADRPFQCDVCQKTFTCASKLKVHKRSHTGVKPFECEFCQRKFKYEHSFKAHKVTHENPDNVPPEKSPTFATNFENTMFRTVYLNSYHSGKYPGNISEQTVVEIIPITVQNIDLRSEMQKNVGSTKCLEKTIEPEISNFISVKNEISDRISSTCEIDVEDVKVEINDVETKFNER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01394558;
90% Identity: iTF_01390524;
80% Identity: -