Basic Information

Insect: Synergus umbraculus
Gene Symbol: -
Assembly: GCA_900474325.1
Location: UCOK01001092.1:146482-149496[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0052 0.6 11.2 0.9 1 20 23 42 23 43 0.96

2 20 0.00047 0.054 14.5 0.3 1 23 51 73 51 73 0.99

3 20 0.0063 0.73 11.0 0.4 3 23 81 101 81 101 0.99

4 20 0.021 2.4 9.3 5.4 1 23 107 129 107 130 0.96

5 20 9.1e-06 0.001 19.9 0.6 2 23 477 498 476 498 0.97

6 20 5.2e-07 5.9e-05 23.8 0.6 1 23 504 526 504 526 0.99

7 20 2.3e-05 0.0027 18.6 1.2 1 23 531 553 531 553 0.98

8 20 0.00093 0.11 13.6 0.3 2 23 564 586 563 586 0.94

9 20 3.2e-07 3.7e-05 24.5 0.5 1 23 592 614 592 614 0.99

10 20 4.6e-07 5.2e-05 24.0 0.7 1 23 620 642 620 642 0.98

11 20 1.8e-05 0.002 19.0 1.0 1 23 662 684 662 685 0.96

12 20 1.4e-06 0.00016 22.5 2.7 1 23 691 713 691 713 0.99

13 20 4.6e-05 0.0053 17.7 1.6 1 23 718 740 718 740 0.97

14 20 2.9e-05 0.0033 18.3 1.1 2 23 758 780 757 780 0.95

15 20 1.7e-05 0.002 19.0 1.3 1 23 786 808 786 808 0.99

16 20 0.00015 0.017 16.1 2.1 1 23 813 835 813 835 0.97

17 20 8.6e-06 0.00098 20.0 0.3 2 23 838 859 837 859 0.98

18 20 0.00021 0.024 15.6 0.2 1 23 865 887 865 887 0.96

19 20 7.2e-05 0.0082 17.1 1.1 1 23 894 916 894 916 0.97

20 20 6e-06 0.00069 20.5 1.8 1 23 921 944 921 944 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0052	0.6	11.2	0.9	1	20	23	42	23	43	0.96
2	20	0.00047	0.054	14.5	0.3	1	23	51	73	51	73	0.99
3	20	0.0063	0.73	11.0	0.4	3	23	81	101	81	101	0.99
4	20	0.021	2.4	9.3	5.4	1	23	107	129	107	130	0.96
5	20	9.1e-06	0.001	19.9	0.6	2	23	477	498	476	498	0.97
6	20	5.2e-07	5.9e-05	23.8	0.6	1	23	504	526	504	526	0.99
7	20	2.3e-05	0.0027	18.6	1.2	1	23	531	553	531	553	0.98
8	20	0.00093	0.11	13.6	0.3	2	23	564	586	563	586	0.94
9	20	3.2e-07	3.7e-05	24.5	0.5	1	23	592	614	592	614	0.99
10	20	4.6e-07	5.2e-05	24.0	0.7	1	23	620	642	620	642	0.98
11	20	1.8e-05	0.002	19.0	1.0	1	23	662	684	662	685	0.96
12	20	1.4e-06	0.00016	22.5	2.7	1	23	691	713	691	713	0.99
13	20	4.6e-05	0.0053	17.7	1.6	1	23	718	740	718	740	0.97
14	20	2.9e-05	0.0033	18.3	1.1	2	23	758	780	757	780	0.95
15	20	1.7e-05	0.002	19.0	1.3	1	23	786	808	786	808	0.99
16	20	0.00015	0.017	16.1	2.1	1	23	813	835	813	835	0.97
17	20	8.6e-06	0.00098	20.0	0.3	2	23	838	859	837	859	0.98
18	20	0.00021	0.024	15.6	0.2	1	23	865	887	865	887	0.96
19	20	7.2e-05	0.0082	17.1	1.1	1	23	894	916	894	916	0.97
20	20	6e-06	0.00069	20.5	1.8	1	23	921	944	921	944	0.95

Sequence Information

Coding Sequence: ATGCATTTGCACTTACTTCGCCATATTGAATCTTACATATCTGGTCATAATAAAAGCAACCAAATTTACAAATGTTCGAGGTGTgcaaaagaattttctaagGCAGAAAACTTTAAGCTTCATGTATTCCACTACTCAGGATTTAAGCCATTTCAATGCGACCTTTGCATGAAAGCTTATGCGACCCTCGATCTTCTAAATGTTCATAAACGCACACATGTAGGAAAAGAAATTCGCGGCTGTAAATTCTGTGGAAAAGAATTTGTTGGGGTCCGTTATCTTATGCTTCATGAACGTATGCACATCAAAGAAAAGCCTTTCAAGTGCAGATTTTGTGAAGAAAGATTCGCAGCTTCGTGTCAATTAAGAAGACATGTTCTTAAACATCACGATCCCGCAGAGTATAACGGATGTTGGAAAAAGCGTGGTCGGTCTGTGAAGAAAGATCGATCTAGGACGTCTGATGAAcctaaaaagtattttaaacttaCGAATTGTGATCAACTTGTCAAGTCTGAACCACCTACGAATTATGAACAATCCACGGAGAATGAAGAACCTACGGAGTGTAAACAACCTACGAAGAGTGGAGAATCTACGATGTGTGATCAACCAAACAAGCGTGGCCGACCTAGAAAGTGTCTTCAACCTATCAAGTATGAACAACCTACGAAGCGTGGTCGATCTAGGAAGTGTCATCAACCGAAGAAGATTGATCTACTTCAGAAGTGTGATCAACTTATCAAGAGTGAACCACTTACGGAGTATGAACAACCTATGCAGAGTGATCAAGCTATAAAGATTAATCAATCCACAGAGTCTGAACAATTTATAGCGTGTGATCAACCTATCAAGAGTGAACCACTTACGGAGTATGAACAACCTGCGAAGAATGATGATCAATTAACGAAGAGTGACCTACCCACAGAGAGTGGTCAACCTATCAAGATTAATCAATCTACGGAGTCTGAACAGTCTACGATATGTGATCAACCTAGGAAACGTGGTCGACCTAAAAAGTGTAATCAACCTAAGAAGATTGATCAACCTGAGAAGGGTGTTCaatctaaaataattgataaaccCAAGAAGATTCAATCCACGGAGTCTGAAAAGTCTACGATATGTGATCAACCTAAGAAACGTGGTCGTCCTAAGAAGCGTGGTCGATCTAAGAAGCTTGGTCAACCTAAGAAGATTGATCAAATTCAGAAGTGTGATCAACTTCAGAAGTATGATGAACCTAAGAAGATGGATCAACCTAAGAAGAGTAATCAACCTGTCAAGTGTGATCAAcccaaaaaaattgatcaacCCGTCAAGTGTGCTTGGCctaaaaatattgatcaaCATACAAATAGTGATCAATCCACAAAGAGTGATGAACTTCCAAAGGGTGAAGTACATATGAAAAAGGAACTACCCACGACTTGTGAAATTTGCGCAAAAAGTTTTACGAAGCGTTCTTATTTAATGATTCATATGATAAGTCACTCAGAGCACAAACCGTTTAAATGTGATTTATGTTCAAAGACTTTTCCTAGAAAATGGAGTTTAACAGCACACATAAAAGTTCACGAAGACAGAACTTTCGTGTGTGAGATTTGTTCTAAAAGTTTTCGGAGAAAGGACATCCTAGAGAAGCACAAAAAGGTACATGAAAAACCTATAAAGGGTGATGCAAATACGCAGTGTAAAATTTGTGGAGTTTATTCTTCGTCACGTGATACTTTAAGGACTCATATGGTGGTGAATCACTCAGAATTAAAACCATTTCAATGTCAAACTTGTGAAAAGAGTTTCCCTAGAAAATGGGCTTTAACAGCACACATGAAAATTCACGAGGACAAAAAGCCTTTTGTTTGTGATGTTTGTTCCAAAGGTTTTAGGAGAAAAGCTACTTTAAACAACCACATGAAGGTCCACCTGGTCAAACCTGAGATTTCTAATCAGTCTAAGAATGATCAGCCTACAAATAATCAATTCAAGTGTGAAATTTGTGGAAAAGCTTATCCGTCACGTCATGGATTATGGGTTCATACGATAAGTCATCACACCGACgataaatcctttaaatgtaaattttgtcCAAAGAATTATTCTAGAAAATGGCTATTAACGTCGCATATGAGGATGCatgaaaaaaaagctttttcgTGTGATATTTGTCCGAAAACTTTCCGGAAAAAGGACTATTTAGACTTACACAAAAAGTTACACAGGGAAAAACGCACAAAATGGGATCAACTTGCAAAGACTGATCCACTTACAAAGTGTAAAATTTGCGGGACATATTATGCGACTCgtagtaatttaaagactCATACAATAATGTATCACTCAGATGTTAAACCCTTCAAATGTAAACTTTGTCCTAATAGGTATTCTAGAAAATGGGGATTAATGTCACACATGAGAATGCACCAAGAAAAGGCTTTTGCATGTGACATTTGTTCCAAACGTTATAGAAGAAAGTGCGCTCTGGATTTGCACATGAAGGTACACAGGGACAAGTGTGAAATCTGCGACAAAATATTTCTGGATTCAAGTAGCCTTAAATTACATATGCGTATTCATAAAGTTGAAAGGGTTTTCGAATGTGATGTCTGCaagaaaactttcaaaacCAGAGAGAGTATTGTAGATCACGTAGCTATTCATTTCGAAAAAGCCCCTTCATTTTCTTGTCGAGTGTGTAAAGAAACTTACAAGTCAGCCAATTCTTTAAATACTCATATGAAAGCTCACGCAATTCCTAAGTTCGAATGTAACATTTGCAAAAAGTCTTACTTTAGAAAAAGTGATTTAATGACACATATGTACAATATTCACGTAGAAATTCATTCTCCAGTGTTGAACTGTGATTTAGTTCAAGAGGAgttgaattctaaaaaactTTCTGAAAGTCAGGGTTTTGATAAGTTTCCTCTGAATGAGGAAATTTGTTATCCATTAGATACAAGTGATATAGAAATTGAAGACATAAAGATAGAACTTAATATTGaggattattga
Protein Sequence: MHLHLLRHIESYISGHNKSNQIYKCSRCAKEFSKAENFKLHVFHYSGFKPFQCDLCMKAYATLDLLNVHKRTHVGKEIRGCKFCGKEFVGVRYLMLHERMHIKEKPFKCRFCEERFAASCQLRRHVLKHHDPAEYNGCWKKRGRSVKKDRSRTSDEPKKYFKLTNCDQLVKSEPPTNYEQSTENEEPTECKQPTKSGESTMCDQPNKRGRPRKCLQPIKYEQPTKRGRSRKCHQPKKIDLLQKCDQLIKSEPLTEYEQPMQSDQAIKINQSTESEQFIACDQPIKSEPLTEYEQPAKNDDQLTKSDLPTESGQPIKINQSTESEQSTICDQPRKRGRPKKCNQPKKIDQPEKGVQSKIIDKPKKIQSTESEKSTICDQPKKRGRPKKRGRSKKLGQPKKIDQIQKCDQLQKYDEPKKMDQPKKSNQPVKCDQPKKIDQPVKCAWPKNIDQHTNSDQSTKSDELPKGEVHMKKELPTTCEICAKSFTKRSYLMIHMISHSEHKPFKCDLCSKTFPRKWSLTAHIKVHEDRTFVCEICSKSFRRKDILEKHKKVHEKPIKGDANTQCKICGVYSSSRDTLRTHMVVNHSELKPFQCQTCEKSFPRKWALTAHMKIHEDKKPFVCDVCSKGFRRKATLNNHMKVHLVKPEISNQSKNDQPTNNQFKCEICGKAYPSRHGLWVHTISHHTDDKSFKCKFCPKNYSRKWLLTSHMRMHEKKAFSCDICPKTFRKKDYLDLHKKLHREKRTKWDQLAKTDPLTKCKICGTYYATRSNLKTHTIMYHSDVKPFKCKLCPNRYSRKWGLMSHMRMHQEKAFACDICSKRYRRKCALDLHMKVHRDKCEICDKIFLDSSSLKLHMRIHKVERVFECDVCKKTFKTRESIVDHVAIHFEKAPSFSCRVCKETYKSANSLNTHMKAHAIPKFECNICKKSYFRKSDLMTHMYNIHVEIHSPVLNCDLVQEELNSKKLSESQGFDKFPLNEEICYPLDTSDIEIEDIKIELNIEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392194;
90% Identity: iTF_01392194;
80% Identity: -