Basic Information

Insect: Synergus japonicus
Gene Symbol: -
Assembly: GCA_900474275.1
Location: UCOH01005713.1:6696-9710[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.037 3.9 8.5 2.9 1 20 23 42 23 43 0.96

2 20 0.00048 0.05 14.5 0.3 1 23 51 73 51 73 0.99

3 20 0.004 0.41 11.6 0.3 3 23 81 101 80 101 0.98

4 20 0.021 2.1 9.3 5.4 1 23 107 129 107 130 0.96

5 20 9.3e-06 0.00095 19.9 0.6 2 23 477 498 476 498 0.97

6 20 5.3e-07 5.4e-05 23.8 0.6 1 23 504 526 504 526 0.99

7 20 2.4e-05 0.0024 18.6 1.2 1 23 531 553 531 553 0.98

8 20 0.00094 0.097 13.6 0.3 2 23 564 586 563 586 0.94

9 20 3.3e-07 3.4e-05 24.5 0.5 1 23 592 614 592 614 0.99

10 20 4.6e-07 4.8e-05 24.0 0.7 1 23 620 642 620 642 0.98

11 20 1.8e-05 0.0018 19.0 1.0 1 23 662 684 662 685 0.96

12 20 1.4e-06 0.00014 22.5 2.7 1 23 691 713 691 713 0.99

13 20 4.7e-05 0.0048 17.7 1.6 1 23 718 740 718 740 0.97

14 20 2.9e-05 0.003 18.3 1.1 2 23 758 780 757 780 0.95

15 20 1.7e-05 0.0018 19.0 1.3 1 23 786 808 786 808 0.99

16 20 0.00015 0.015 16.1 2.1 1 23 813 835 813 835 0.97

17 20 8.7e-06 0.0009 20.0 0.3 2 23 838 859 837 859 0.98

18 20 0.00036 0.037 14.9 0.3 1 23 865 887 865 887 0.96

19 20 7.3e-05 0.0075 17.1 1.1 1 23 894 916 894 916 0.97

20 20 6.1e-06 0.00063 20.5 1.8 1 23 921 944 921 944 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.037	3.9	8.5	2.9	1	20	23	42	23	43	0.96
2	20	0.00048	0.05	14.5	0.3	1	23	51	73	51	73	0.99
3	20	0.004	0.41	11.6	0.3	3	23	81	101	80	101	0.98
4	20	0.021	2.1	9.3	5.4	1	23	107	129	107	130	0.96
5	20	9.3e-06	0.00095	19.9	0.6	2	23	477	498	476	498	0.97
6	20	5.3e-07	5.4e-05	23.8	0.6	1	23	504	526	504	526	0.99
7	20	2.4e-05	0.0024	18.6	1.2	1	23	531	553	531	553	0.98
8	20	0.00094	0.097	13.6	0.3	2	23	564	586	563	586	0.94
9	20	3.3e-07	3.4e-05	24.5	0.5	1	23	592	614	592	614	0.99
10	20	4.6e-07	4.8e-05	24.0	0.7	1	23	620	642	620	642	0.98
11	20	1.8e-05	0.0018	19.0	1.0	1	23	662	684	662	685	0.96
12	20	1.4e-06	0.00014	22.5	2.7	1	23	691	713	691	713	0.99
13	20	4.7e-05	0.0048	17.7	1.6	1	23	718	740	718	740	0.97
14	20	2.9e-05	0.003	18.3	1.1	2	23	758	780	757	780	0.95
15	20	1.7e-05	0.0018	19.0	1.3	1	23	786	808	786	808	0.99
16	20	0.00015	0.015	16.1	2.1	1	23	813	835	813	835	0.97
17	20	8.7e-06	0.0009	20.0	0.3	2	23	838	859	837	859	0.98
18	20	0.00036	0.037	14.9	0.3	1	23	865	887	865	887	0.96
19	20	7.3e-05	0.0075	17.1	1.1	1	23	894	916	894	916	0.97
20	20	6.1e-06	0.00063	20.5	1.8	1	23	921	944	921	944	0.95

Sequence Information

Coding Sequence: ATGCATTTGCACTTACTTCGCCATATTGAATCTTACATATCGGGTCATAATAAAAGCAACCAAATTTACAAATGTTCGAGGTGtgcaaaagaattttgtaagGCAGAAAACTTTAAGCTTCATGTATTCCACTACTCAGGATTTAAGCCATTTCAATGCGACCTTTGCATGAAGGCTTATGCGACCCTCGATCTTCTAAATGTTCATAAACGCACACATGTAGGAAAAGAAATTCGCGACTGTAAATTCTGTGGAAAAGAATTTGTTGGGGTTCGTTATCTTATGCTTCATGAACGTATGCACATCAAAGAAAAGCCTTTCAAGTGTAGATTTTGTGAAGAAAGATTCGCAGCTTCGTGTCAATTAAGAAGACATGTTCTTAAACATCACGATCCCGCAGAGTATAACGGATGTTGGAAAAAGCATGGTCGGTCTGTGAAGAAAGGTCGATCTAGGACGTCTGATGAacctaaaaagtattttaaacttaCGAATTGTGATCAGCTTGTCAAGTCTGAACCACCTATGAATTATGAACAATCCACGGAGAATGAAGAACCTAAGGAGTGTAAACAACCTACGAAGAGAGGAGAATCTACGATGTGTGATCAACCAAACAAGCGTGGCCGACCTAGAAAGTGTCTTCAGCCTATCAAGTATGAACAACCTACGAAGCGTGGTCGATCTAGGAAGTGTCATCAACCGAAGAAGATTGATCTACTTCAGAAGTGTGATCAACTTATCAAGAGTGAACCACTTACGGAGTATGAACAACCTATGCAGAGTGATCAAGCtatgaaaattaatcaatCCACAGAGTCTGAACAATTTATGGCGTGTGATCAACCTATCAAGAGTGAACCACTTACGGAGTATGAACAACCTGCGAAGAATGATGATCAATTCACGAAGAGTGACCTACACACAGAGAGTGATCAACCTATTAAGATTAATCAATCTACGGAGTCTGAACAGTCTACGATATGTGATCAACCTAGGAAGCGTGGTCGACCTAAAAAGTGTAATCAACCTAAGAAGATTGATCAACCTGAGAAGGGTGctaaatctaaaataattgatCAACCCAAGAAGATTCAATCCACGGAGTCTGAAAAGTCTACGATATGTGATCAACCTAAGAAACGTGGTCGTCCTAAGAAGCGTGGTCAATCTAAGAAGCTTGGTCAACCTAAGAAGATAGATCAAATTCAGAAGTGTGATCAACTTCAGAAGTATGATCAACCTAAGAAGGTGGATCAACCTAAGAAGAGTAATCAACCTGTCAAGTGTGATCAAcccaaaaaaattgatcaatcCGTCAAGTGTGCTTGGcctaaaaatattgatcaaCATACAAATAGTGATCAATCCACAAAGAGTGATGAGCTTCCAAAGAGTGAAGTACATGTGAAAAAGGAACTACCCACGACTTGTGAAATTTGCGCAAAAAGTTTTACGAAGCGTTCTTATTTAATGATTCATATGATAAGTCACTCAGAGTACAAACCGTTTAAATGTGATTTATGTTCAAAGACTTTTCCTAGAAAATGGAGTTTAACAGCACACATAAAAGTTCACGAAGACAGAACTTTCGTGTGTGAGATTTGTTCCAAAAGTTTTCGGAGAAAGGACATCCTAGAGAAGCACAAAAAGGTACATGAAAAACCCATAAAGGGTGATGCAAATACGCAGTGTAAAATTTGTGGAGTTTATTCTTCGTCACGTGATACTTTAAGGACTCATATGGTGGTGAATCACTCAGAATTAAAACCATTTCAATGTCAAACTTGTGAAAAGAGTTTCCCTAGAAAATGGGCTTTAACAGCACACATGAAAATTCATGGGGATAAAAAGCCTTTTGTTTGTGATGTTTGTTCCAAAGGTTTTAGGAGAAAAGCTACTTTAAACAACCACATGAAGGTCCACCTGGTCAAACCTGAGATTTCTAATCAGTCTAAGAATGATCAGCCTACAAATAATCAATTTAAGTGTGAAATTTGTGGAAAAGCTTATCCGTCACGTCATGGATTATGGGTTCATACGATAAGTCATCACACCGACgataaatcctttaaatgtaaattttgtcCAAAGAATTATTCTAGAAAATGGCTATTAACATCGCATATGAGGATGCATGAAAAAAAGGCTTTTTCGTGTGATATTTGCCCGAAAACTTTCCGGAAAAAGGATTATTTAGACTTACACAAGAAGTTACACAGGGAAAAACGTACAAAATGGGATCAACTTGCAAAGACTGATCCACTTACAAAGTGTAAAATTTGCGGGACATATTATGCGACTCgtagtaatttaaagactCATACAATAATGTATCACTCAGATGTTAAACCCTTCAAATGTAAACTTTGTCCTAATAGGTATTCTAGAAAATGGGGATTAATGTCACACATGAGAATGCACCAAGAAAAGGCTTTTGCATGTGACATTTGTTCCAAACGTTATAGAAGAAAGTGCGCTCTGGATTTGCACATGAAGGTACACAGGGACAAGTGTGAAATCTGCGacaaaatatttctggatTCAAGTAGCCTTAAATTACATATGCGTATTCATAAAGTTGAAAGGGTTTTCGAATGTGATGTCTGCaagaaaactttcaaaacCAGACAGAGTATTGTAGATCACGTAGCTATTCATTTCGAAAAAGCCCCTTCATTTTCTTGTCGAGTATGTAAAGAAACTTACAAGTCAGCCAACTCTTTAAATACTCATATGAAAGCTCACGCGATTCCTAAGTTTGAATGTAACATTTGCAAAAAGTCTTACTTtagaaaaagtgatttaatGACACATATGTACAATATTCACGTAGAAATTCATTCTCCAGTGTTGAACTGTGATTTAGTTCAAGAGGAgttgaattctaaaaaacttTCTGAAAGTCAGGACTTTGATAAGTTTCCTCTGAATGAGGAAATTCTTTATCCATTAGATACAAGTGATATAGAAATTGAAGACATAAAGATAGAACTTAATATTGAGGATTATTGA
Protein Sequence: MHLHLLRHIESYISGHNKSNQIYKCSRCAKEFCKAENFKLHVFHYSGFKPFQCDLCMKAYATLDLLNVHKRTHVGKEIRDCKFCGKEFVGVRYLMLHERMHIKEKPFKCRFCEERFAASCQLRRHVLKHHDPAEYNGCWKKHGRSVKKGRSRTSDEPKKYFKLTNCDQLVKSEPPMNYEQSTENEEPKECKQPTKRGESTMCDQPNKRGRPRKCLQPIKYEQPTKRGRSRKCHQPKKIDLLQKCDQLIKSEPLTEYEQPMQSDQAMKINQSTESEQFMACDQPIKSEPLTEYEQPAKNDDQFTKSDLHTESDQPIKINQSTESEQSTICDQPRKRGRPKKCNQPKKIDQPEKGAKSKIIDQPKKIQSTESEKSTICDQPKKRGRPKKRGQSKKLGQPKKIDQIQKCDQLQKYDQPKKVDQPKKSNQPVKCDQPKKIDQSVKCAWPKNIDQHTNSDQSTKSDELPKSEVHVKKELPTTCEICAKSFTKRSYLMIHMISHSEYKPFKCDLCSKTFPRKWSLTAHIKVHEDRTFVCEICSKSFRRKDILEKHKKVHEKPIKGDANTQCKICGVYSSSRDTLRTHMVVNHSELKPFQCQTCEKSFPRKWALTAHMKIHGDKKPFVCDVCSKGFRRKATLNNHMKVHLVKPEISNQSKNDQPTNNQFKCEICGKAYPSRHGLWVHTISHHTDDKSFKCKFCPKNYSRKWLLTSHMRMHEKKAFSCDICPKTFRKKDYLDLHKKLHREKRTKWDQLAKTDPLTKCKICGTYYATRSNLKTHTIMYHSDVKPFKCKLCPNRYSRKWGLMSHMRMHQEKAFACDICSKRYRRKCALDLHMKVHRDKCEICDKIFLDSSSLKLHMRIHKVERVFECDVCKKTFKTRQSIVDHVAIHFEKAPSFSCRVCKETYKSANSLNTHMKAHAIPKFECNICKKSYFRKSDLMTHMYNIHVEIHSPVLNCDLVQEELNSKKLSESQDFDKFPLNEEILYPLDTSDIEIEDIKIELNIEDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01394548;
90% Identity: iTF_01394548;
80% Identity: -