Smag003067.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- Zfx
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000008.1:16075356-16081701[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.59 77 4.8 0.2 3 23 14 34 13 34 0.95 2 14 7.4 9.7e+02 1.4 2.7 1 23 862 885 862 885 0.81 3 14 6.3e-06 0.00083 20.5 0.6 3 23 967 988 965 988 0.96 4 14 0.0051 0.68 11.3 0.1 2 23 1001 1022 1001 1022 0.98 5 14 1.4 1.8e+02 3.7 0.8 2 23 1025 1048 1024 1048 0.89 6 14 2.5e-05 0.0033 18.6 4.5 2 23 1055 1076 1054 1077 0.95 7 14 0.11 14 7.1 3.7 5 23 1090 1108 1089 1108 0.97 8 14 2.2e-05 0.0029 18.7 1.5 3 23 1115 1136 1114 1136 0.97 9 14 0.01 1.3 10.4 0.3 2 23 1152 1172 1151 1172 0.97 10 14 6.7e-05 0.0089 17.2 0.7 1 20 1178 1197 1178 1200 0.92 11 14 8.4e-05 0.011 16.9 2.7 1 23 1208 1230 1208 1230 0.99 12 14 0.0023 0.31 12.4 3.2 1 23 1236 1258 1236 1258 0.97 13 14 1.1e-05 0.0015 19.7 4.8 1 23 1264 1286 1264 1286 0.99 14 14 0.0078 1 10.7 6.6 1 23 1292 1314 1292 1315 0.96
Sequence Information
- Coding Sequence
- ATGGATTACGGAAATAGTGTTGGGGCCCAGTTGCCCAGTTGCCCAGTTTGCACTCTTTTTCTACGTGAAGGAATCAGTTTACAAAAACACTTGGATACTCACCCAAAAGAGCAGGTCATCGAAGCTCTTATTAAAGCTAGTGCCTCAGCCTTAAATCAGCTACAGGATTCGCCACATCAATCACCATCATCACCACCAAATCAAATTGCGACTCAGCCTCAGACGCAAGTGAATGCAGCTTCTCATGTTTCCTCACAATCTCCATATCCTGTGGCGCCACTTTTCGAGTGCCCGTCAACCTTAAATGCCGTACTCTCCCCGCCACAGTATGCCTCATTTAGTTATCAACAATTTGTCAACAATGGAACTGTGATGATTCCTGCGGTGATGGCACCGCAAAACAATCCTATGATGCAAATGCTTTATTCTCCGTATGGCATGTATCATCAGCAACCAGTTCCTACAGTTCAAATGATATCACCCGTTACTCCAACCGCTTCTACTGCAACAGTGAACACAACAAACACTGCTAGTAGATTCAAACCTACAAATATATTGTCAATCAATGATTCCCTTATAAAAATGAGCCCATCTGAAAAATCGTATACTTGCCCTGAAACCAGACCTTTGCTACCTGAAGTTATACAAGAAAATGAAACACTTCCTGAAACAGACATTAGTTCTACTTCCCGTTCATCTACATCTAAGGAACGATCAAGCCGATGTGATCGGACCACGGATAGTCAATCAGACGTAGAACGCCGAGAACAAATACAAGTTTCCAATGAAGAAGAACGAAATGACGCCTCACCTACAGATCAACGAAATTATCAGGATATCGTACCTCTTGAAGCAGTAAATGATCAAAGCGACAGAATTCAATTGAGTATTGATAGCAAAGAAACTTCGACACGTGAAGCagtaattgaagaaaaattctctAGTGTATCTAAGTTATCTAAAGGCTGCGGCAGTGTCGTTGATGAAGATTCTTTAGATAAAATGGAAGAAGAAGTAGAAAAAGAGGAAGACCAATCACAGGATGACAAGTCTAATTCTAATGAACAAGAAGAGTGGAAACAGTGTTTACGTTCGCAAGTCTCAACAACCAGTGAAAGTGATCAAAATGCAAATCAGCCACAAGTGGAACAACTGGAGCATCTTTTAATAACTATTATAGGGTCAGAATATGATGATGTCAATGCAGCACAATCCAACAATTCTCATACTGTTCGAAAATGCATCAAATCAAGGGAAGAAGTACAGACAAGTGGAAGCCAAAGTGATAATGATTGTTCGCCAACCAACTCCGACTTcaataaatctttttcaatggCTAGTGAGAATTTAACAATTAATGTGGATCGTAATCAAACTTATCACTGTAAAAATAGTGTGTCCGCACCTACGTCTcctaatttcttcaaaaaatctcataaatcaCATTCACGTTTGTCACTACGATCTGACTTTGGATCCAGTGAAAATGTTTCTGCGTATCCAATTGGTTTCGAGGCAGCGGTTTTGAATAATTacgcattttcaaaaaatgagaatgaagATGATGACACTGAAATAGAGCAAATATCTTCTAAGGCCTTAGTAAAGCAATATCATGAAATTGAAGAGGAACGTGCTATGTCACAAACACCTTTTTCCGACACCAGCAGTAATTCTGTTATACGAGTACGCCGCACTGTTCTTAATAAATCTGGTTCACCACTACCTAATCATCTACTTCATGATATTGACATGGATGATAtgatttgtaataaaaaagattatgATCAAAGCGATTCATCAACAGAGCAAAATATTGTCAGTTCCGAGTTTCAAGAGGTGAAAGAGAACTCTAGTGAATACACAGATTTATCCCTAAATCCTCTTGAACGGTTGAAGGCCAAAAGTGAAAAGCAAACTTGTACGAATACTACGAGCAGTTTGATTCTTGATTCTCATAATCAGCAAGAGTCTGCCATGTCAGAAGATGTTTCACTTGCAACAGACACTACATCTGGAAATGAACTTTCGAAATTATCAGAGTCAACTGAACCAACAACAAGTACTAATTCCAGGAATGTCGACGACAACAAGATCATATTTCAGAAACCAGCTACAgacatttttcatataaacGAAGATGCACATAGTGGGCCTATGAATGTTTTCGAATTTGATGGTTTACAAATATTGGTACCCAGTACTTTCATAAGTGAGTCTTCAGAAAAAGCAATTAGCGGGACGAGTCAGCAATCTTTGTCTAGTAGTGAAGGCGGAACCGGTGCCGACGAAGAGATAAAAAGTATCAATATGCGAGCAGATGAAAGTATGCCACCTAGAGGTGAATTATCGGAGCAAGAAAGCAACGAATGTACAGATCAATCTACATGGCAGATTTACATTGGTCAAGAAACATCACGTATGTCCACATCATATGATCTTATGGCTCGTGAAACTTGGGATGAATCCGAAGGTTCGGATAATGAGATAGGAGGATCTCTTTTGGATAGCCGATCCTTAGCGACACATTTTACATCTAGTCTGTTTTTAGATCGTGATAGAAAAACGCCAACGCGgcgaattttcaaatgttcATTCTGTACTGAAGTTTTTGAATGTCCTAAGGAACGCAGAGTTCATAGTACAACTGTTCACAAAGATGCTGGTCCTAGTAATAGTCGAGATCCTACTCAACAGACTGAAATGaaagatattaagttattgGACGGACGTATGAACATGTTTGAAGACATTTTCGTGGCAGGATTACATGTTCAACAAACATATCACCAACCACTGTTACATCAGCTTCAACCACCTCAACAATTAGATGTAGGAAAAtctgaaaatgataaaaaggtTGATAATTTAAGAATTCCCACCTCAATGGacattatttgcaatatttgtaATCAAAGTTTTACTAGTGAGAAGTCGTTACAAATTCATCAGAGAAGAATGCATATTAAAGAATCTGTAAAGCGCGTTAGGGAAAATGCCAAGTGCCAGATTTGTAATCAGGAATTTCCTTCGGTTATTTTGTTTAATgcacatttaaaaatacatccTCTAGAATGCGGTCAGTGtgTATGCGACAAAGCTTTTCTTACTAAGCAAAAGCTTGATGAACACACCAATGGACATACTGGGAATGCTCCCGTCAAATGCAATTTGTGTAATGAAACTTTTCGAAGATACTCGAATTTAACTCAACATAAGAACAGACATCACTTGCacgtgaaaaaaaagttgaaggaCTACATATGTCACTGTGGCGAAgtatttcatacaaaaaagAAACTCGCGTGGCATAAAGAGACGCACGATGAAAAACCAAAAGCTTGTACATATTGTAACGAAAGGTTCATTCACATGGCTAGCCTAACTCGTCACATGCGACGTGCTCACAATCGAAGATTCGTTCCTGATGCTCAAAGGGAAAGTGAAAATGTAGAGTGTCCGATATGTAAATGCATTTACTTACGGTCTTCTTTAGCTGTACATATGAGAGTGCATAATGGTGAGCGGCCATACGAGTGTCAAGTTTGCTCTAAAGCTTTTAGTACGAAATGGAATTTGCAATTACACAAATGGACGCATGCAGCAAGAAGTACTAAACCATTTAAATGTAATCAATGCAGTGCTGCCTTTTATCGACATAGTGACTACACGGCACACATGAATTCTCACAGAAATGTACGGCCTTACACGTGCAATTATTGTGGAGCTCAGTTTATACGAAAATACAATTGTCTCAGGCATGTCAAGGAacatgaagaaaataaagctTATACATGTGATACATGTAACAAAACTTTTCATAGATCGTATTACCTCAAAGAACATTTGCGTGTACATTCGGGTGCAAAACCATATTCGTGTCATATTTGTGGTAAATTGAGTAGTACTAAATCTAATCACAATAAGCATGTGAGAATTCATCACGCGCGAGAACCTGtaaataccgaaaattaa
- Protein Sequence
- MDYGNSVGAQLPSCPVCTLFLREGISLQKHLDTHPKEQVIEALIKASASALNQLQDSPHQSPSSPPNQIATQPQTQVNAASHVSSQSPYPVAPLFECPSTLNAVLSPPQYASFSYQQFVNNGTVMIPAVMAPQNNPMMQMLYSPYGMYHQQPVPTVQMISPVTPTASTATVNTTNTASRFKPTNILSINDSLIKMSPSEKSYTCPETRPLLPEVIQENETLPETDISSTSRSSTSKERSSRCDRTTDSQSDVERREQIQVSNEEERNDASPTDQRNYQDIVPLEAVNDQSDRIQLSIDSKETSTREAVIEEKFSSVSKLSKGCGSVVDEDSLDKMEEEVEKEEDQSQDDKSNSNEQEEWKQCLRSQVSTTSESDQNANQPQVEQLEHLLITIIGSEYDDVNAAQSNNSHTVRKCIKSREEVQTSGSQSDNDCSPTNSDFNKSFSMASENLTINVDRNQTYHCKNSVSAPTSPNFFKKSHKSHSRLSLRSDFGSSENVSAYPIGFEAAVLNNYAFSKNENEDDDTEIEQISSKALVKQYHEIEEERAMSQTPFSDTSSNSVIRVRRTVLNKSGSPLPNHLLHDIDMDDMICNKKDYDQSDSSTEQNIVSSEFQEVKENSSEYTDLSLNPLERLKAKSEKQTCTNTTSSLILDSHNQQESAMSEDVSLATDTTSGNELSKLSESTEPTTSTNSRNVDDNKIIFQKPATDIFHINEDAHSGPMNVFEFDGLQILVPSTFISESSEKAISGTSQQSLSSSEGGTGADEEIKSINMRADESMPPRGELSEQESNECTDQSTWQIYIGQETSRMSTSYDLMARETWDESEGSDNEIGGSLLDSRSLATHFTSSLFLDRDRKTPTRRIFKCSFCTEVFECPKERRVHSTTVHKDAGPSNSRDPTQQTEMKDIKLLDGRMNMFEDIFVAGLHVQQTYHQPLLHQLQPPQQLDVGKSENDKKVDNLRIPTSMDIICNICNQSFTSEKSLQIHQRRMHIKESVKRVRENAKCQICNQEFPSVILFNAHLKIHPLECGQCVCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLHVKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDTCNKTFHRSYYLKEHLRVHSGAKPYSCHICGKLSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392985;
- 90% Identity
- -
- 80% Identity
- -