Basic Information

Insect: Synergus magnus
Gene Symbol: topi
Assembly: GCA_032275165.1
Location: JAUESH010000036.1:3459901-3462321[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.7 7.5e+02 1.7 4.1 1 20 237 256 237 259 0.88

2 15 9.5 1.2e+03 1.0 1.6 3 21 267 285 265 288 0.71

3 15 0.041 5.4 8.5 0.2 2 21 295 314 294 315 0.92

4 15 5.7e-06 0.00075 20.6 1.8 1 23 322 344 322 344 0.97

5 15 2.7e-07 3.5e-05 24.8 1.8 1 23 350 372 350 372 0.98

6 15 0.00087 0.11 13.7 0.2 2 23 384 405 383 405 0.95

7 15 0.65 85 4.7 1.7 1 23 421 443 421 443 0.96

8 15 4.1 5.4e+02 2.2 2.5 1 22 481 502 481 505 0.88

9 15 0.0019 0.25 12.7 0.2 1 23 518 540 518 540 0.96

10 15 0.00026 0.034 15.4 0.1 1 23 544 566 544 566 0.95

11 15 2.2e-06 0.00029 21.9 3.1 1 23 572 594 572 594 0.98

12 15 0.00016 0.021 16.0 0.5 1 23 600 623 600 623 0.97

13 15 0.054 7.1 8.1 0.7 1 23 629 651 629 651 0.89

14 15 3e-07 3.9e-05 24.6 1.1 1 23 657 679 657 679 0.99

15 15 1.6e-05 0.0022 19.2 5.0 1 23 685 708 685 708 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.7	7.5e+02	1.7	4.1	1	20	237	256	237	259	0.88
2	15	9.5	1.2e+03	1.0	1.6	3	21	267	285	265	288	0.71
3	15	0.041	5.4	8.5	0.2	2	21	295	314	294	315	0.92
4	15	5.7e-06	0.00075	20.6	1.8	1	23	322	344	322	344	0.97
5	15	2.7e-07	3.5e-05	24.8	1.8	1	23	350	372	350	372	0.98
6	15	0.00087	0.11	13.7	0.2	2	23	384	405	383	405	0.95
7	15	0.65	85	4.7	1.7	1	23	421	443	421	443	0.96
8	15	4.1	5.4e+02	2.2	2.5	1	22	481	502	481	505	0.88
9	15	0.0019	0.25	12.7	0.2	1	23	518	540	518	540	0.96
10	15	0.00026	0.034	15.4	0.1	1	23	544	566	544	566	0.95
11	15	2.2e-06	0.00029	21.9	3.1	1	23	572	594	572	594	0.98
12	15	0.00016	0.021	16.0	0.5	1	23	600	623	600	623	0.97
13	15	0.054	7.1	8.1	0.7	1	23	629	651	629	651	0.89
14	15	3e-07	3.9e-05	24.6	1.1	1	23	657	679	657	679	0.99
15	15	1.6e-05	0.0022	19.2	5.0	1	23	685	708	685	708	0.96

Sequence Information

Coding Sequence: ATGAATGATGAAGATACAAAAATGGAAGTCCTTAATGGATCTTTAAGTTGGTCTCAAGATGATCCAATTTTGACAAACGAAATTTGGGAATTACCGCATgaatcagaaaataaaatgtctttCCCTTTGTGTCGATTGTGCGCTGGATTTGCTGAAAATCctgtttatatttattcagaaattgGTGAATCAATGAAACTCGCTCACAAGATCAACACCTGCTTGAGTgttaaaGTAAAAAAAACGGATCCACTCCCGAAGCAATTGTGCACCATCTGCGTGGAAAAAGTAACCTGGTGCGACGAGTTCGTTTTCCAGTCCATCAAAGCAGAAGAAGCTTTATTATCGatgcaaaaagaaaaacaaatttctgaaaatctggATCAGATTACAAACGAAATAAGCTGCAACAAGAAATCTTACCCTCTTTGCCTCGAAGGAAAAATGTCCTCTAACCAAAGCAAGATCGATCTTATAAATCTGAACCCCTTCGACTCAGAAATCGTCCTTGAGGGCAACGGCGAAGGAAAAGCCTTCAACGATCTCAAATTCTTGAAGGAAACCCCTGGAAGTTCTTCAATAACACTCCAGTGTCTAGAAAGCaccgaaaaatatttaaaatgtggAGCTTGCATGAATCTTTACCACACGAAGGAAATGCTTGAGACTCACAAGTGCAAACCTCCAATTCAAAATAGTTCCAAACCCTACATTTGCACTCTCTGCGAAGCAAAATTCAACTTCGAGGAACATCTAAACTTCCACCTCAAATGCCATAACGGATCAAAAGCTCTCTTTTGTGAAATCTGCAAAATAAGTTTTGGAAAAGAGctcaaattctttttccacTATAAAAGATATCATTCTAAAGAAAAGGGTGTATCCTGTCTTCAGTGTGGGAAGCTTTTCCAGGAACAAGAAGAGCTTAAGATTCACGTCTGTATTGATGGAAAAGCAAAGCCTCACGTTTGTGAGGTTTgcaataaaagattttctgatGGCTACACTTTGAAGAGACATGTTATGACTCATCTTTCAGAAAAACCTTATAAATGCGATGAATGTTCGAAGAGCTTTACCCAAAAATCAAGGTTGAATAAGCATATCGCTAGTCATAAGACTGTGATGGAGAGTTCTCAGAATCTTTGGAAGTGTATGGAATGTGGAAAGGTTTTTGGTTCTTCCGAAGAAGCTGAGAAACATTTTCAGAATCATGATCAGAAGATTCTGATTGTTGAGGAAGTTTCGGCGACGAAGGTCTATCAGTGCGAATTTTGTAATAGTTATTTTGTAGAGAGGGAACGGATGAAAATTCATCGGAGTCAACATCGTTTGGAAAAGGCTTATGAGTGTCAGGATTGCAGGATGGTGCATAAATGTTTTTCTGAAGCTGTCATGGATTGGAAGCAACAtccgaaatcttttaaggtTCAGATCCTCTTCATCTGCGAAATCTGCAACACGGAAATGAAAGACCTTCACGTCCTCTACAAGCACTATCACAAAAGTCTTCACTATCTCCCCCGATCAACAGGATACGGAACCGGAAAATTCGCCTGTGAACTCTGTGGATCAGTTTTTCAAGATCTcgacgaatttaaaaatcacgaGAGAGACCATTGTTCAAAATTCCTCTGTGACATCTGTGGAAGTTCTTTACCTTCCGCAAGTTCCTTAAATGCTCACAAAAGACGTCACAGTGGACTCAAACCCTACGTTTGTAATATTTGTGGAAAAAGTTACACCCAATCGAGTCATATGTGGACtcataaaagatttcatatgGGGATCAAACCTTATGCTTGTGAATACTGCGACCAAAAATTCACAATCAAACCCGACCTAGCTGATCATACGAGGAAAAAACACACGAGGGAAAGGCCTTTTAAATGCGATGTTTGCAATAAAGCTTTTCTCACCGGATCAGTTTTTTATCAGCATAGACTTATTCATACAGGCGATAGAAGATATAAATGTAGTTACTGCCAAAAAGCTTTCACGAGGACTGAGGCTTTGAATaatcatattaaaattcatacgGGAGAAAAACCTCATGCCTGTGATGTTTGCGGACGATGTTTTAGACAGAAGGGAGATATGAGAAAACATAGGAAGACTCAGCATTCTGAAAAAAGTGTAGAATTGTAG
Protein Sequence: MNDEDTKMEVLNGSLSWSQDDPILTNEIWELPHESENKMSFPLCRLCAGFAENPVYIYSEIGESMKLAHKINTCLSVKVKKTDPLPKQLCTICVEKVTWCDEFVFQSIKAEEALLSMQKEKQISENLDQITNEISCNKKSYPLCLEGKMSSNQSKIDLINLNPFDSEIVLEGNGEGKAFNDLKFLKETPGSSSITLQCLESTEKYLKCGACMNLYHTKEMLETHKCKPPIQNSSKPYICTLCEAKFNFEEHLNFHLKCHNGSKALFCEICKISFGKELKFFFHYKRYHSKEKGVSCLQCGKLFQEQEELKIHVCIDGKAKPHVCEVCNKRFSDGYTLKRHVMTHLSEKPYKCDECSKSFTQKSRLNKHIASHKTVMESSQNLWKCMECGKVFGSSEEAEKHFQNHDQKILIVEEVSATKVYQCEFCNSYFVERERMKIHRSQHRLEKAYECQDCRMVHKCFSEAVMDWKQHPKSFKVQILFICEICNTEMKDLHVLYKHYHKSLHYLPRSTGYGTGKFACELCGSVFQDLDEFKNHERDHCSKFLCDICGSSLPSASSLNAHKRRHSGLKPYVCNICGKSYTQSSHMWTHKRFHMGIKPYACEYCDQKFTIKPDLADHTRKKHTRERPFKCDVCNKAFLTGSVFYQHRLIHTGDRRYKCSYCQKAFTRTEALNNHIKIHTGEKPHACDVCGRCFRQKGDMRKHRKTQHSEKSVEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392986;
90% Identity: -
80% Identity: -