Slae009765.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- topi
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000028.1:3114503-3116972[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.4 7.3e+02 1.7 4.1 1 20 250 269 250 272 0.88 2 13 0.038 5.2 8.5 0.2 2 21 308 327 307 328 0.92 3 13 3.4e-06 0.00046 21.2 2.1 1 23 335 357 335 357 0.97 4 13 2.5e-07 3.5e-05 24.7 1.8 1 23 363 385 363 385 0.98 5 13 0.00029 0.04 15.1 0.2 2 23 397 418 396 418 0.95 6 13 0.012 1.6 10.1 1.1 1 23 434 456 434 456 0.97 7 13 0.0068 0.92 10.8 0.1 1 21 531 551 531 552 0.95 8 13 0.0011 0.16 13.2 0.1 1 23 557 579 557 579 0.95 9 13 2.1e-06 0.00028 21.9 3.1 1 23 585 607 585 607 0.98 10 13 0.00015 0.021 16.0 0.5 1 23 613 636 613 636 0.97 11 13 0.13 18 6.7 0.7 1 23 642 664 642 664 0.88 12 13 1.9e-07 2.6e-05 25.1 1.1 1 23 670 692 670 692 0.99 13 13 1.5e-05 0.0021 19.1 5.0 1 23 698 721 698 721 0.96
Sequence Information
- Coding Sequence
- ATGCTAAGATCTGCAGATTCTATAGCTGTCTATAGTACGTTGAGTGATGAAGATACAAAAATGGAAGTCCTTAATGGATCTTTAATTTGGTCTCAAGATGATCTAATTTCGTCAGacgaaattttcgaattaCCCCTTGAATCAGGAAATAAAAAGGCTTTCCCTTTGTGTCGATTGTGCGCTGGATTCGCCGAAAATcctgtttatatttattcagaaattgGAGAATCAATGAAACTCGCTCACAAAATCAACACCTGCTTGAGtgttaaagTAAGAAAAACTGATCCACTTCCGAAACAATTGTGTACCATCTGCGTGGAAAAAGTGACCTGGTGCAACGAGTTCGACTTACAGTCCATCAAAGCAGAACAAGCTTTTCTATCAatccaaaaagaaaaacaaatttctgaaaatctggATCATAATACAAACGAGATAAGCTACGATGAGAAATCTTGTCCTCTTTGCCTCGAAGGAAAAATGTCCACTAACCAAAGCAAGATCgatcctttgaaattgaatCCCTTCGATTCAGAAATCGTCCTCGAAAGCGTTGATGAAGGAAAAGGAACCAACGATCTCAAATTATTGGAGGAAGCccatgaaaattcttcaataactCTTCAGTATCTAGGaagcactgaaaaatatttaaaatgtggaGCTTGTATGAATCTCTATCACACAAAGGAAATGCTCGATACTCACAAGTGCAAACCtccaattcaaaataattcaaaacccTACATTTGCACTCTCTGTGAAGCAAAATTCAACTTCGAGGAACATCTAAACTTCCACCTCAAATGCCATAATGGATCAAAAGCTCTCTACTGTGAaatctgcaaaataaattttggaaaagagcttaaatttttcttccacTATAAAAGATATCATTCTAAAGAGAAGTTTGTATCCTGTCTTCAGTGTGGAAAGCTTTTCCAGGAACAGGAAGAGCTTAAGATTCACGTATGTGTTGATGGAAAAGCAAAGCCTCACGTTTGCAAGGTTtgtaataaaagattttctgaTGGCTACACTTTGAAGAGACATATTGCAACTCATCTTCCAGAAAAACCTTATAAATGCGATGAATGTTCGAAGAGCTTTACCCAAAAATCAAGGTTGAATAAGCATATCGCTAGTCATGAGATTGTGAAGGAGAGTTCTCAGAATCTTTGGAAGTGTATGGAATgtggaaaagtttttatttcttccgAAGATGCTGAGAAACATTTTCAGAACCATGATGAGAAGATTCTGGTTGTTGAGGAAGTTTCTGCGACTAAGGTCTACCAGTGCGAATTTTGTAATAGTTATTTTGTGGATAGGGATTGGATGAAAATCCATCGGAGTCAACATCGTTTGGAAAAGGCTTATGAGTGTTTGGATTGCAGAATGGTTCATAAATGTTTTTCTGAAGCTGTCATGGATTGGAAGCAGCATCCTAAAGCTTTTAAGGTTCAGGTCCTCTTCTTCTGCGAAATCTGCAACATAGAAATGAAAGACCTTCACGTCCTCTACAAGCACTACCACAAAAAACTTCACTATCTTCCCCGGTCAACAGGATACGGAACCGAAAAATTCGTCTGTGAACTTTGTGGATCAGTTTTCCAAGATCTTGACGCATTCAAAAATCACGAGAGGAACCTTTGTTCAAAATTCCTATGCGACATCTGTGGAAGTTCTTTACCTTCCGCAAATTCCTTAAATGCTCACAAAAGACGTCACAGTGGACTCAAGCCCTACGTTTGTAATATTTGTGGGAAAAGTTACACTCAATCGAGTCATATGTGGACtcataaaagatttcatatggGGATCAAACCTTACGCTTGTGAATATTGTGAtcaaaaattcacaattaaacCCGATCTAGCTGATCACACGAGGAAAAAGCACACGAGGGAAAGGCCTTTTAAATGTGACGTTTGCAGTAAAGCGTTTCTTACCGGATCAGTTTTTTATCAGCATAGACTTATTCACACAGGCGATAGAAGatataaatgtaattactGCCAAAAAGCTTTTACGAGGACTGAGGctttaaataatcatattaaaattcatacagGAGAAAAACCTCATGCTTGTGATGTTTGCGGAAGATGTTTTAGACAAAAAGGAGATATGAGAAAACATAGAAAGACTCAACATACTGAAAAAGGTGTAGAATTGTAG
- Protein Sequence
- MLRSADSIAVYSTLSDEDTKMEVLNGSLIWSQDDLISSDEIFELPLESGNKKAFPLCRLCAGFAENPVYIYSEIGESMKLAHKINTCLSVKVRKTDPLPKQLCTICVEKVTWCNEFDLQSIKAEQAFLSIQKEKQISENLDHNTNEISYDEKSCPLCLEGKMSTNQSKIDPLKLNPFDSEIVLESVDEGKGTNDLKLLEEAHENSSITLQYLGSTEKYLKCGACMNLYHTKEMLDTHKCKPPIQNNSKPYICTLCEAKFNFEEHLNFHLKCHNGSKALYCEICKINFGKELKFFFHYKRYHSKEKFVSCLQCGKLFQEQEELKIHVCVDGKAKPHVCKVCNKRFSDGYTLKRHIATHLPEKPYKCDECSKSFTQKSRLNKHIASHEIVKESSQNLWKCMECGKVFISSEDAEKHFQNHDEKILVVEEVSATKVYQCEFCNSYFVDRDWMKIHRSQHRLEKAYECLDCRMVHKCFSEAVMDWKQHPKAFKVQVLFFCEICNIEMKDLHVLYKHYHKKLHYLPRSTGYGTEKFVCELCGSVFQDLDAFKNHERNLCSKFLCDICGSSLPSANSLNAHKRRHSGLKPYVCNICGKSYTQSSHMWTHKRFHMGIKPYACEYCDQKFTIKPDLADHTRKKHTRERPFKCDVCSKAFLTGSVFYQHRLIHTGDRRYKCNYCQKAFTRTEALNNHIKIHTGEKPHACDVCGRCFRQKGDMRKHRKTQHTEKGVEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01393758;
- 90% Identity
- -
- 80% Identity
- -