Smag014836.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000043.1:5725545-5728405[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00059 0.077 14.3 0.2 1 20 142 161 142 162 0.96 2 13 0.00038 0.05 14.9 0.9 1 23 170 193 170 193 0.93 3 13 8.9e-06 0.0012 20.0 0.5 1 23 199 221 199 221 0.98 4 13 8.5e-06 0.0011 20.1 0.4 1 23 367 389 367 389 0.97 5 13 0.002 0.26 12.6 0.3 2 22 399 419 398 419 0.94 6 13 0.00031 0.041 15.1 2.6 1 20 441 460 441 463 0.92 7 13 0.015 1.9 9.9 0.7 1 23 468 491 468 491 0.95 8 13 1.7e-06 0.00023 22.2 0.9 1 23 497 519 497 519 0.98 9 13 0.00052 0.069 14.4 3.1 1 23 526 548 526 548 0.99 10 13 0.00018 0.024 15.9 0.7 3 23 556 576 554 576 0.97 11 13 0.00042 0.055 14.7 0.2 1 23 582 605 582 605 0.96 12 13 0.13 17 6.9 0.1 1 23 619 641 619 641 0.96 13 13 0.0026 0.34 12.2 0.0 2 23 858 879 857 879 0.96
Sequence Information
- Coding Sequence
- ATGGAATCTCATGAGAACGAAGAATACGTCACCTTTCCTCTTTCCGGTGTGCATGACggaattcaacaaaatgtCATTTCCCACGAAGAAATATGCGAACCAGTGGAAGAATGTGTTCTCGAAGATGATTTAGTTGAAGTAACTGTTGGCGACGTCAATTCGACCATTACCGAAGCTCGCGTAGctgtgaaaattttaaacgatagCAGATCCGACGAGGATGAAGAACATCCTGTTATTTATCCAGTTTATATAAAGGAAGAACATCATTATACGTCCGGAGATGACGAATCGATGGCTGTCGAGGCTCTGAGACAACTAGGAGGAATGTATCCTTGTTttgatgataaaaaaataaactgtcCAAAGTTGCTTACTCCATCGGTGTTGGCAATACATCATCAGACATGTGTCGCTGAGAAATTTACTTGCAGCACGTGTGGAGAAAAATTTGAGAGAAAAATAGACCTGGTGAATCACACAGTATGTCACCAGGTGGATCGACCACACTCCTGCAGGACTTGtgggaatttgtttaaatcaaagtCTCTTTTACAGGCTCACATGGCTGAAGTTCACCAGGTTGAAAAGCCACACAAGTGTGCAATTTGTGGGGCAGATTTTCAAAGGCCTTCGAGTCTGTCGAATCATATGAAGATTCATACATATGTTGCCGGGAGGGCTATTATGCAGAATCAGGGTAATAATGCTTCGCAGAGTGGTGAGACTTTTAGAAAATGGCCGGAAAATAATATTAGTGAGACACAGAATGTTTCTGCGGCATCGTCTTCAATGCAAAGTATTCAGAATTATGATGTTTCCCAAGTGCAGTGGTCTGTACCGACTTACAATTTTCATAACGAGGATGCTGGTGTCAATTCTCTTGGAAATCAGGATAAAATGGATACTTTGCAGGAATTTGCAGTGATGTCAAATGGAGAAGTGGctcaatttgaatatttgcCCCAAAATGCAATCTCGAATCAGATCGGGCAGTACAATTTAACACTTAATTCCtttacaaattccgaaatggtAAAAGTCGAAACCCTGCATCGAAGCGACTACATTGAAGTGGAAGTAACCGAAAACAAAAGACATACATGTAGTCAGTGTGGCGTGAGCTTTAGTCGAGCAAGTGCCCTGGCTTCTCATGAAAAGATTCACGAAACTAAAAATTGGGCAGCGCCAATTGAGTGCGAGTATTGTGACAAACAATTTCAGGACGGAAATCACTTAGTGACGCATCAGCAGACTTGTGCTAAGAGAATGATGCAGAGCAACATCGAACAGGGGATACCAAACAACAAATGGGGCAAGCATGCTTGTTCAGAGTGCGGGAAGAAATTCACAACCAAGCAGAAAATGTTCAGGCATCAGTGGATTCacagGAAGAAAACCCATTCCTGTGAAGTTTGCGGATCGCAGTTTGAGAAGCAGAATCAGTTAGACGAGCATCGACTCTCTGCACATCCTGGAGATTCTCCCTTCACGTGTCATGAGTGCGGCAAAAGTTTCGTCTCTCGACAAGGTCTCTGGGAACATGGAAGGATGCACGCTGGAAGTCCAGCTCATTTTCAGTGTGATGCTTGTTCCAAGACTTTTTCTTCTCGCCAGGGTTACTTAATTCATCATCGAACGCACACCGGAGAACGACCCTACGGTTGCAAATTTTGTTGGAAGTCTTTCCGAGATGGAGGAACATTGCGAAAACACGAGCGAATTCATACGGGTGAGAGACCACATGTATGTCCTCTTTGTTCAAGAGCCTTCAACCAAAAAGTGGTTTTGAGAGAACATGTAAGATGGGTTCACGCCGCTGGAAAAAACGATTCTGGAGTAACTGGACCACCTTTTCCTTGTCCACTTTGTGGGGCGATAAACCAAGATCGGGATGAACTTTGTGCGCATATCGTAAAGCATTCAGATCAGATGATTGCTGAGGCTAAAGCGAAAACCAACAACAATGCACCAAAAGCGAAACCCGCAAAGAAAAAGGCAAAAGCAGGATCGACTTCACAGGAAAAAATGCAGgatgaaagtttaattttaaagttggaACAAAACGAGCCTATGTTATCGATAACAAATTCGCCTATGACGTTAACGGACACGTCGACGAAATCTGATGATATGCAGATTGTAGAAGGACAAGACGAGGGTCAATTTAAAGAAGATGATAGCGATATGATTACAGATCAGGATAACAGTCAGCTGGTAAAACAGGGTTCGGAAAAATTAGGAAGTAATATTCAAGCTGTTGCCACCACTAGGCACAATCAAATCGGCTTAATTCCCTACTCTAAATCCGACGACACTTTGCACATTCTCTCTAATAAGCAAAATAATACTTTGCACTTTATATCGAAACAAAACGAAAGCTCGCCCGTTTTGGCTATTCCAAATCCTCAGGGTAATGAGAATTTTTCAAGCCAAATTGCACACATTACTAATTCTGATTTGACTTCGAATATGGTAACGCATACGACGAAACAaaatcaagttttaaaatcccaggtGAGTGAAGTTATTCATGAAATTCAGTATGAAAGTGATGACAGTGAGGAATTAGTTTGTGGAATTTGTGGAGAAGATTTTGATGACAAAAATGTACTCATGGAACACGTGAAGattcatatttaa
- Protein Sequence
- MESHENEEYVTFPLSGVHDGIQQNVISHEEICEPVEECVLEDDLVEVTVGDVNSTITEARVAVKILNDSRSDEDEEHPVIYPVYIKEEHHYTSGDDESMAVEALRQLGGMYPCFDDKKINCPKLLTPSVLAIHHQTCVAEKFTCSTCGEKFERKIDLVNHTVCHQVDRPHSCRTCGNLFKSKSLLQAHMAEVHQVEKPHKCAICGADFQRPSSLSNHMKIHTYVAGRAIMQNQGNNASQSGETFRKWPENNISETQNVSAASSSMQSIQNYDVSQVQWSVPTYNFHNEDAGVNSLGNQDKMDTLQEFAVMSNGEVAQFEYLPQNAISNQIGQYNLTLNSFTNSEMVKVETLHRSDYIEVEVTENKRHTCSQCGVSFSRASALASHEKIHETKNWAAPIECEYCDKQFQDGNHLVTHQQTCAKRMMQSNIEQGIPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLSAHPGDSPFTCHECGKSFVSRQGLWEHGRMHAGSPAHFQCDACSKTFSSRQGYLIHHRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNDSGVTGPPFPCPLCGAINQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKAKPAKKKAKAGSTSQEKMQDESLILKLEQNEPMLSITNSPMTLTDTSTKSDDMQIVEGQDEGQFKEDDSDMITDQDNSQLVKQGSEKLGSNIQAVATTRHNQIGLIPYSKSDDTLHILSNKQNNTLHFISKQNESSPVLAIPNPQGNENFSSQIAHITNSDLTSNMVTHTTKQNQVLKSQVSEVIHEIQYESDDSEELVCGICGEDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676988; iTF_01394567; iTF_01392962; iTF_01391404; iTF_01392209; iTF_01390540; iTF_01389663; iTF_00200992; iTF_00064675; iTF_00011382;
- 90% Identity
- iTF_01392962;
- 80% Identity
- -