Scon013402.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000046.1:4777812-4780663[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.034 4.2 8.6 0.1 3 21 121 138 119 139 0.73 2 14 0.00055 0.069 14.3 0.2 1 20 145 164 145 165 0.96 3 14 0.00036 0.044 14.9 0.9 1 23 173 196 173 196 0.93 4 14 3.1e-06 0.00039 21.3 0.9 1 23 202 224 202 224 0.98 5 14 7e-06 0.00087 20.2 1.6 1 23 370 392 370 392 0.97 6 14 0.0011 0.14 13.3 0.4 2 22 402 422 401 422 0.95 7 14 0.00029 0.036 15.1 2.6 1 20 444 463 444 466 0.92 8 14 0.014 1.7 9.9 0.7 1 23 471 494 471 494 0.95 9 14 1.6e-06 0.0002 22.2 0.9 1 23 500 522 500 522 0.98 10 14 0.00049 0.061 14.4 3.1 1 23 529 551 529 551 0.99 11 14 0.00017 0.021 15.9 0.7 3 23 559 579 557 579 0.97 12 14 0.00039 0.049 14.7 0.2 1 23 585 608 585 608 0.96 13 14 0.12 15 6.9 0.1 1 23 622 644 622 644 0.96 14 14 0.014 1.8 9.8 0.0 2 23 855 876 854 876 0.96
Sequence Information
- Coding Sequence
- ATGGAATCTCATGAGAACGAAGAATACGTGACTTTTCCCCTTTCCAGTGTGCATGACggaattcaacaaaatatcATTTCCCACGAAGAAATATGCGAACCAGTGGAAGAATGTGTTCTCGAAGATGATTTAGTTGAAGTAACTGTCGGCGATGTCAACTCGAGCATTACCGAAGCCCGCGTAGctgtaaaagttttaaacgatGGCAAATCCGACGAGGATGAAGAAAATTCTGTTATGTATCCAGTTTATATAAAGGAAGAACATCAATATACGTCCGGGGATGACGAGTCGATGGCTGTCGAGGCTTTGAGACAACTAGGAGGAATGTATCCTAGTTTTGAtgataaaaaagtaaactgTCCAAATTGTGACAAGTTGTTTACTCCACCGGAGCTGGCAACACATCATCAGACTTGTATCGCTGAGAAATTTACTTGCAGCACGTGTGGAGAaaaatttgagagaaaaatagaCCTGGTGAATCACACAGTATGTCACCAGGTGGATCGACCACATTCCTGCAGAACTTGTGGGAATTTGTTCAAATCAAAGTCTCTTTTACAGGCTCATATGGCTGAAGTTCACCAGGTTGAAAAGCCACACAAGTGTACAATTTGTGGGGCAGATTTTCAAAGGCCTTCGAGTCTGTCGAATCATATGAAGATTCATACTTATGTTGCCGGGAGGGCTATTATGCAGAATCAGGGTAATAATGCTACGCAGAGTGGTGAGACTTTTAGAAAATGGccggaaaataatattaacgaCACACAGAATATTTCTGCTGCATCGTCTTCAGTGCaaattattcagaattatGATGTTTCCCAAGTACAGTGGTCTGTACCAACTTACAATTTTCATAACGAAGGTGCTGGCACCAATTCCCTTGGAAATCAGGATAAAATGGATACTTTACAGGAATTTACAGTGATGTCAAATGGAGAAGTGGCTCAATTTGAATATATGCCTCAAAATGCAGTCTCGAATCAGATCGGGCAGTACAATTTAACACTTAATTCCTTTACTAATTCTGAAATGGTAAAAGTCGAAACCCTACATAGAAGCGACTTCATTGAAGTGGAAGTGACTGAAAACAAAGGACATACATGTAGTCATTGTGGCATGAGCTTTAGTCGAGCAAATGCTTTGGCTTCTCATGTAAAGATTCACGAGACGAAAAATTGGCCAACGCCAATTGAGTGCGAATATTGTGACAAACAATTTCAGGATGGAAATCATTTAATGACGCATCAGCAGACTTGTGCTAAAAGAATGATGCAGAGCAACATCGAACAGGGGATACCAAACAACAAATGGGGCAAGCATGCTTGTTCAGAGTGTGGGAAGAAATTTACAACCAAGCAGAAAATGTTCAGACATCAGTGGATTCAcagGAAGAAAACGCATTCCTGTGAAGTTTGTGGATCACAGTTTGAGAAGCAGAATCAGTTAGACGAGCACAGACTTTCTGCACATCCTGGAGATTCTCCCTTTACGTGTCATGAGTGCGGCAAAAGTTTCGTCTCTCGACAAGGTCTCTGGGAACATGGAAGGATGCACGCTGGAAGTCCTGCTCATTTTCAGTGTGATGCTTGTTCCAAGACTTTTTCTTCTCGCCAGGGTTACTTAATTCATCATCGCACGCACACTGGAGAACGACCCTACGGTTGCAAATTTTGTTGGAAGTCTTTCCGAGATGGAGGAACTTTGCGAAAACACGAGCGAATTCATACGGGTGAGAGACCACATGTATGTCCTCTTTGTTCAAGAGCCTTCAACCAAAAAGTGGTTTTGAGGGAACATGTAAGATGGGTTCACGCCGCTGGAAAAAACGATTCTGGAGTAACTGGACCACCTTTTCCTTGTCCACTTTGTGGCGCGATAAACCAAGATCGGGATGAACTTTGTGCGCATATCGTCAAGCATTCAGATCAGATGATTGCTGAGGCCAAAGCGAAAACTAACAACAATGCACCAAAAGCGAAacctgcaaaaaaaaagacaaaagcAGGATCGACTTCACGGGAAAAAATGCAGGAtgaaagtttaatttcaaGGTTGGAACAAAATGAGGCTTTGTTATCGATAACTGACTTGCCTATGACGTTAACCATCACGTCGACGAAATCTGATGATATGCAGATTGTAGAAGGACGAGATGAGAGTCAATTTAAAGATGATAGTCAACTGATTAAACAGGGTTCGGAAAAATTAGGAAGTAATATTCAAGCTGTTGCCACCACGAGGCACAATCAAATCGGCACGGTGCATTTAATTCCCTACTCTAAAACCGACACTTTGCACATTCTCTCTAATAAGCAAAATAATACTTTGCATTTGATATCGaaacaaaacgaaaattcGCCCGTTTTGGCTATTCCAAATCCTCAGGGTAATGAGAATTTTTCGAGCCAAATTGCACACATTACTGATTCTGATTTGACTACGAATATGTTAACGCATTCAATGAAACGAAagcaagttttaaatttaaaatcccaaatGGATGAAGATATTCATGAAGTTGAATATGAAAGTGATGACGGTGAGGAATTGGTTTGTGGAATTTGTGGAGAAGATTTTGATGAAAAGAATGTACTCATGGAACACGTGAagattcatatttaa
- Protein Sequence
- MESHENEEYVTFPLSSVHDGIQQNIISHEEICEPVEECVLEDDLVEVTVGDVNSSITEARVAVKVLNDGKSDEDEENSVMYPVYIKEEHQYTSGDDESMAVEALRQLGGMYPSFDDKKVNCPNCDKLFTPPELATHHQTCIAEKFTCSTCGEKFERKIDLVNHTVCHQVDRPHSCRTCGNLFKSKSLLQAHMAEVHQVEKPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQNQGNNATQSGETFRKWPENNINDTQNISAASSSVQIIQNYDVSQVQWSVPTYNFHNEGAGTNSLGNQDKMDTLQEFTVMSNGEVAQFEYMPQNAVSNQIGQYNLTLNSFTNSEMVKVETLHRSDFIEVEVTENKGHTCSHCGMSFSRANALASHVKIHETKNWPTPIECEYCDKQFQDGNHLMTHQQTCAKRMMQSNIEQGIPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLSAHPGDSPFTCHECGKSFVSRQGLWEHGRMHAGSPAHFQCDACSKTFSSRQGYLIHHRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNDSGVTGPPFPCPLCGAINQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKAKPAKKKTKAGSTSREKMQDESLISRLEQNEALLSITDLPMTLTITSTKSDDMQIVEGRDESQFKDDSQLIKQGSEKLGSNIQAVATTRHNQIGTVHLIPYSKTDTLHILSNKQNNTLHLISKQNENSPVLAIPNPQGNENFSSQIAHITDSDLTTNMLTHSMKRKQVLNLKSQMDEDIHEVEYESDDGEELVCGICGEDFDEKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01393736;
- 90% Identity
- iTF_01392962;
- 80% Identity
- -