Slae000965.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000002.1:3882172-3889865[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.043 5.8 8.3 0.5 1 23 770 792 770 792 0.96 2 17 4.5 6.1e+02 1.9 0.5 1 19 798 816 798 817 0.80 3 17 0.43 59 5.1 0.9 2 23 825 846 824 846 0.95 4 17 0.00035 0.047 14.9 1.7 3 23 855 876 854 876 0.97 5 17 0.0029 0.4 12.0 2.1 1 23 883 906 883 906 0.95 6 17 9.3e-05 0.013 16.7 0.7 1 23 912 935 912 935 0.94 7 17 0.26 36 5.8 1.3 2 23 943 963 943 963 0.96 8 17 7.5e-07 0.0001 23.3 2.6 2 23 969 990 968 990 0.97 9 17 6.7e-06 0.00091 20.3 0.3 1 23 996 1018 996 1018 0.98 10 17 0.00077 0.11 13.8 2.4 2 23 1030 1052 1029 1052 0.95 11 17 0.019 2.6 9.4 1.5 1 23 1058 1081 1058 1081 0.94 12 17 0.043 5.9 8.3 5.1 3 23 1104 1125 1102 1125 0.93 13 17 0.001 0.14 13.4 1.1 2 23 1132 1154 1131 1154 0.96 14 17 3.4e-05 0.0046 18.1 1.2 2 23 1162 1183 1161 1183 0.96 15 17 0.0012 0.16 13.2 2.3 1 23 1189 1212 1189 1212 0.96 16 17 0.95 1.3e+02 4.1 5.7 2 23 1219 1240 1218 1240 0.96 17 17 0.0049 0.67 11.2 1.9 1 23 1246 1268 1246 1268 0.98
Sequence Information
- Coding Sequence
- ATGAAATTCTACGATATGGTTAGATATGTGCAGCAACGATTAGGATATCCAGATAAGAACGGATTAgatgTTCCTGAGGCCAAGAAACGATGGGAATGTTTGGTGAAGCAATACCTAAAAGAATTGAGAAGATTAAGTTCTGCTAAAAAGAATGataaatcccttaatatttcGTCGATAGTAAACAATAGTTTTCTAGTTGCTGAAGAATCAAATAATTTCGAGTGTGGGAGGATTAAAAACAACTCGACAAAAAGTGAGAATCTTCAAGGAGTGAGTCCTGCTGAATATTATGCTTCTGTTTTTGGAGAGTCAAGATTGCTTTCCGAGCAAGAAATCGCAAATATAGAATACCAGGATCACACATACggaataaaaatgaactacCGTTCCGCAGCGAACCAAATTGGTTCTCCGAAGCCGACTATGTTTCACACTTATTCTTCCCCTTCTCAATCTCTGAAGGAAAAATGTCCCAATCAAATAACCGACATCAACGACCTCAGAAAAATCACCCCCAGAGTGAAACTTTTGAATCAAGAGTCGCCAACACTGCAACCagtcaaaaaacaaaattcctcTCTTAAATTACTCGATCAGAAATCGGACTCCACGAAAAAggcattgaaaaaatattgtcgaaCCTGTGGTGATGTTAAACTTCCccttattgatatttttagcGAGAAGGGCGTTCAGATGAAACTCAGCCAGCAAATTCGTCAcctggaaaatattaaagaatctgATTCCCTCTCGACTCAAATGTGCATGGATTGTAtctgtgatttaaaaatgagttatACTTTCTTCACGcagattaaaaaatcagaGCATAAATTGAAGTCAATCCAAGCGAAGTTGCTCGAGACAGAGACggcgaatttaaaaatgcaagagGAGATTTCTAAAACTGATCCTCTTTTCATTCAACACGATCCAGCCAATTTAAATGACAACGGCCCTCGAATCTCTGCGGTATATTCTGGTCAAGACGTCCAAAGCTGGGAATCAGATTCACTTTTGAATGTTAAAATGGAGCCTGAAATTCAGGAAGagaacaaaattcaaagtgaTAACGATTCTCTTGAGGAATTTGATCCTGAAGATCCTCCTTATAATCCTGATAGTGAAGAGGAAGAGAATTCGGATGAAGAACTGGAAAATGCTCCGAGACTTTTTAAGGATCCAAAAAGATTAGAAGCGAAGAGTTTCATGAACAAAGAAACAGAGGAAGCAGAGATTGAAAGCGAGAGTTTGAAGAGAAAATCATCTGATGAAAGAAACGAGGCTGTGGATAGATTGTCGAAGTTGAAAACGCTTGGACCGAAAGATGCGAAGATTAGGAAGTTGAATGTAAATGAGgctttgaatataaaaaaggagGAGAATGGGGTCATGTACGTTACAGTTCGAGGCACAAAACCAAATGAACTGCTGTTAgtgaaagtaaagaaaatggAGAAGGCTGAAAAAAGTAAACCTGTCGGTAAGAAAGAAGCTTCGAAAGAAAAGGACAGAGATCCCTTCGCAGAAATAAAAGGTAAAATTATAGAAGAGCAGatagaagaatataaaaagaaaagggaGAAAATTCTTGGCCCTTCCGCTCAAACTAATTTCACTGAACTAAATCAGGGGGAACTTATAGTAAAGAGCAATGTTCTTAAACTAAAGAAAACGGAAATCCTTACTGAAATACTTCATCAGGAAGACGCGGAAATTCTGGACGACAGTATAGATATAAAGGAAGTTATAATCAACGAAGTTTTAGACAACGAAGTTTCATCTAAGGAAGTTTTACCCAAAGAAGTTTTACCCAAGGAAATGGCACACAAGGCAGTCCAAGTCAAGCCAGTTTTAACTAAGGAGATATCCAAGGAATTTCCagagataaaaaaggaagttgtggagataaaaaaggaatttccagagataaaaaaggataaGTCGAAGAAGAGCAAAGAACCGAAACCGAAAATTTACAACAACCAGGAGGAATACAATTTTCGGATGGAGACGGTGAAGAACAAATGGGAAGATAAGCAGCGAAAGGATTGGGAAGAAGTAAATCCTGGAATTGAAAATCCGGTGGTTAGATTGAAAAGAGTTTTGGGCGAGGCGAGCGAGGGGGGAAATCTTcaagattttcttgaaaatctccaGCAAAGGAAGATGATAATGGCGAAATTAAACGATGAAGACATCGTTACCCTTTTTCAAGAGAGAATGAACTCTCGTAAAAGTGTATCCGATGCGGAAGAAGAagtgaaagaagaagaagaagaagttcCTGAGGTTGAACTATTCGATTGTGATTTTTGTTTCCTATCTTTTACAACGAAGGATATTATCGAGGAGCATATGAAGATTCACGATACGAGAATTCTTCACTACTGCGAGGATTGTAGCGAGGAATTTCCGGTCTTGAGGTTGAAGAAAAATCACAATGTGATTTGCATCAGGAAGCTGATTTGCAAGTACTGCGATTTGATGTTGGACTCGAAAGGGAAGAAGAGACAACACGAGCAGAAACATTGTGACAATCTTTTTGGACAGCTTTGCGAATATTGTGGGGAGAAATTCAAACATCAGGGAACTTTGGATCAACATGTCAAGTCGAGACACATGGCTTTGGAGAAGGTTTTCCAGTGCCCGAAATGTCCGAAGAAGTTTGCCTTCAAGACGAAACTGAGTTTTCATTTGAAGAGCGTTCATACCTCATTGAGGGCTTATTTGTGCGAGGATTGTGgagcagattttaaaaacccGGCGAGCTTGAGACACCACAGAATTAGAAAGCATCAGCCGACTGGGAACAAGAGGGAATGTCCAGTTTGCAAGAAGATGATTCCATTTTATAGTCTCAGCAAACACATGCACACGCATAAGGCTTACACCATCAAATGTCCTCATTGTGATAAGATGTTCAAGAATACTTCGACGCTGAAGCAGCATGTCAGAATTCATGAGGATCAGAGACAGTTTAGatgCGACACTTGCGGAGTTGGATTCAATCGAAGAGACGGTCTTCGACTTCACATGAAGGTCCACGAAAAATCGGACAGTCGAGGCCTGAAAGAGTGTTCCTGCCAAGTATGTGGAGAAAAATTCCCGAATCACTCGATGCTGGTTATTCATCGAAATCGTCTTCACAAGGATGGGAGAAATTACACTTGTCATATTTGCAACAGGTCAATGATTTCTACCCGATCTCTGGAATGGCATTTAGCTCACATTCACAATGAAGCTCTTCCTGGAGTTGTAAAGGAAGAATTGGACGGTGGAGGGGAATCAAAAAGAGTCTGTTGCTTCCACTGTGACAAgacttttaaaactgaaatgaTTCTAAGAactcatataaaaaattctcacaTGGAAAAGGAACCAGTGAAGTGTTTAGATTGCGATTTGACCTTCACGAGTGATGTTAGACTTAGGCATCACATGATGGTCACCCATAACAGACTTGAAGGGACTTTAGAGTGTCCGCATTGCCCGAAAAGATTTGTAAATCAACTGAGACTAAAAACTCACATGATTTCACATTCTGAGGAACGACCTTACACGTGTGAGATTTGTGGGTTCAATCTTAAGAcgaaaattcaattgattAAGCATCATCAGAATCGGCACAGTGATGAGAGGCCTTTACAGTGTCGACATTGCGATTGGAGATGTAAACAGGTTAGTGCCCTTGTTTGCCACGAAAGGACTCACACAAACGAGCGGCCTTATGCATGCAGCGTCTGCAAGCAAAGATTCAAGTACCTAGgggataaaaataaacacGAGAGACGCCACGTATCTCTGGGAGGTAGTGGATTCAAAAGAATCGTTACTACTAGAAGCGGGAAACGATCCCAACCTAAGGAAGAAGGCGAGGGTGATTCTTCCATTTCTGAACAAGAACAACTAGTGGAACAAATGGAAGAAGATATGGAAATGGAAGAAAGACTCGTAGATTACGAGATTGAGGAGGAAGATGTTAAACTTGAGGAGCAGGGGGAGGTCACGGAAGACGATAATGAGTATTCTAATTACCAACAGGTAATTATTCCTGACTACAGACAGgattATGAAGAAACTTCAAGAGAAGCTTCGGAGGCCGCGGAGGTGATAATGAGCATGGAAGATGGAAATGTTTACACCGAAGAAGTAACAGCTGAAGATACAGAGGATATAGAGACGACACATATAATTGAAGACGAAATTATGGCGAATGAAATTCTTCAGTCTGGAACTGTTGTTCATATTGAACAGCAAGATGAGGAAGGAAAAATCCAGGTTATTCCTGTCGTTCTTTCAATTCCTGATTTAGCTACAGAAAACTCTGAAGTTAATCTTGCAACAGCTTCGATTATGTATAATAACGAAGagtgtaattaa
- Protein Sequence
- MKFYDMVRYVQQRLGYPDKNGLDVPEAKKRWECLVKQYLKELRRLSSAKKNDKSLNISSIVNNSFLVAEESNNFECGRIKNNSTKSENLQGVSPAEYYASVFGESRLLSEQEIANIEYQDHTYGIKMNYRSAANQIGSPKPTMFHTYSSPSQSLKEKCPNQITDINDLRKITPRVKLLNQESPTLQPVKKQNSSLKLLDQKSDSTKKALKKYCRTCGDVKLPLIDIFSEKGVQMKLSQQIRHLENIKESDSLSTQMCMDCICDLKMSYTFFTQIKKSEHKLKSIQAKLLETETANLKMQEEISKTDPLFIQHDPANLNDNGPRISAVYSGQDVQSWESDSLLNVKMEPEIQEENKIQSDNDSLEEFDPEDPPYNPDSEEEENSDEELENAPRLFKDPKRLEAKSFMNKETEEAEIESESLKRKSSDERNEAVDRLSKLKTLGPKDAKIRKLNVNEALNIKKEENGVMYVTVRGTKPNELLLVKVKKMEKAEKSKPVGKKEASKEKDRDPFAEIKGKIIEEQIEEYKKKREKILGPSAQTNFTELNQGELIVKSNVLKLKKTEILTEILHQEDAEILDDSIDIKEVIINEVLDNEVSSKEVLPKEVLPKEMAHKAVQVKPVLTKEISKEFPEIKKEVVEIKKEFPEIKKDKSKKSKEPKPKIYNNQEEYNFRMETVKNKWEDKQRKDWEEVNPGIENPVVRLKRVLGEASEGGNLQDFLENLQQRKMIMAKLNDEDIVTLFQERMNSRKSVSDAEEEVKEEEEEVPEVELFDCDFCFLSFTTKDIIEEHMKIHDTRILHYCEDCSEEFPVLRLKKNHNVICIRKLICKYCDLMLDSKGKKRQHEQKHCDNLFGQLCEYCGEKFKHQGTLDQHVKSRHMALEKVFQCPKCPKKFAFKTKLSFHLKSVHTSLRAYLCEDCGADFKNPASLRHHRIRKHQPTGNKRECPVCKKMIPFYSLSKHMHTHKAYTIKCPHCDKMFKNTSTLKQHVRIHEDQRQFRCDTCGVGFNRRDGLRLHMKVHEKSDSRGLKECSCQVCGEKFPNHSMLVIHRNRLHKDGRNYTCHICNRSMISTRSLEWHLAHIHNEALPGVVKEELDGGGESKRVCCFHCDKTFKTEMILRTHIKNSHMEKEPVKCLDCDLTFTSDVRLRHHMMVTHNRLEGTLECPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRHCDWRCKQVSALVCHERTHTNERPYACSVCKQRFKYLGDKNKHERRHVSLGGSGFKRIVTTRSGKRSQPKEEGEGDSSISEQEQLVEQMEEDMEMEERLVDYEIEEEDVKLEEQGEVTEDDNEYSNYQQVIIPDYRQDYEETSREASEAAEVIMSMEDGNVYTEEVTAEDTEDIETTHIIEDEIMANEILQSGTVVHIEQQDEEGKIQVIPVVLSIPDLATENSEVNLATASIMYNNEECN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389691;
- 90% Identity
- -
- 80% Identity
- -