Basic Information

Insect: Synergus laeviventris
Gene Symbol: PRDM10
Assembly: GCA_032275145.1
Location: JAUESI010000003.1:9239036-9243298[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00013 0.018 16.2 0.2 2 23 484 505 483 505 0.96

2 14 1.2e-07 1.6e-05 25.8 2.8 1 23 539 561 539 561 0.98

3 14 0.0066 0.9 10.8 3.5 1 21 569 589 569 590 0.94

4 14 0.0078 1.1 10.6 0.3 2 23 618 639 617 639 0.95

5 14 0.00015 0.021 16.0 0.0 2 23 652 673 651 673 0.95

6 14 0.00043 0.058 14.6 1.9 1 23 690 712 690 712 0.98

7 14 0.0061 0.83 11.0 2.6 2 23 721 742 720 742 0.96

8 14 0.019 2.6 9.4 0.1 1 23 749 771 749 771 0.98

9 14 0.0023 0.31 12.3 7.3 1 23 778 800 778 801 0.96

10 14 0.0026 0.35 12.1 3.1 1 23 806 828 806 828 0.98

11 14 2.9e-06 0.00039 21.4 1.5 1 23 834 857 834 857 0.96

12 14 0.0017 0.23 12.7 1.7 1 23 890 913 890 913 0.97

13 14 0.00013 0.018 16.2 2.4 1 23 935 958 935 958 0.97

14 14 0.0039 0.53 11.6 3.4 3 23 996 1017 996 1017 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00013	0.018	16.2	0.2	2	23	484	505	483	505	0.96
2	14	1.2e-07	1.6e-05	25.8	2.8	1	23	539	561	539	561	0.98
3	14	0.0066	0.9	10.8	3.5	1	21	569	589	569	590	0.94
4	14	0.0078	1.1	10.6	0.3	2	23	618	639	617	639	0.95
5	14	0.00015	0.021	16.0	0.0	2	23	652	673	651	673	0.95
6	14	0.00043	0.058	14.6	1.9	1	23	690	712	690	712	0.98
7	14	0.0061	0.83	11.0	2.6	2	23	721	742	720	742	0.96
8	14	0.019	2.6	9.4	0.1	1	23	749	771	749	771	0.98
9	14	0.0023	0.31	12.3	7.3	1	23	778	800	778	801	0.96
10	14	0.0026	0.35	12.1	3.1	1	23	806	828	806	828	0.98
11	14	2.9e-06	0.00039	21.4	1.5	1	23	834	857	834	857	0.96
12	14	0.0017	0.23	12.7	1.7	1	23	890	913	890	913	0.97
13	14	0.00013	0.018	16.2	2.4	1	23	935	958	935	958	0.97
14	14	0.0039	0.53	11.6	3.4	3	23	996	1017	996	1017	0.98

Sequence Information

Coding Sequence: ATGGACTTAAGGGGCCCTCCAGAGGGGGCCCCTGGCGACCCTCTGGAGATATCCAGCATCGAAAAACTACCCGATGTCTCGGAAACTTGGTCAGCCGACAACATCGTACCTTCTCTCTGCGAACAACccaaaaaaatgaacaacagattattattcttaacaGTGGAGTACGTGGAGGACCAAACACGAGACTACACTCGCATGTTTTCCGTTTACGAGCCCGTCTCCTATTCCCCAAGAGCATCCTCTCCACTTTCAGAATTTGAACACCGCGTTAGTCCCCACGATCCTAACATGAGCTCAGCCGCAAGATATTCTCCAACTCCTGTTCAGTTGCCTCCTTCaccttttcaaaattctgttgTTGTTCTACAAAGTCCACCTTCTCCATTGATTCCTGCATCAGAGACGAATGCAAGGACAAATATCAACTATGCCGCTCAATTAGCCGATCCGGCTGATTCTCAGGACATTCCGCAAAGCGACAATTCTGTGGACTTTGCCGATGGGAGTAGCGGGGAAAGCCTCGTCCCTGGGAATGAATTAATCCTAATGCAGgGCTCAAACCCTGAATTAGAACCTTCGGCCCCACCGCTGATGCTCTCAGGATTACCTGGTTCCGATTTCGCTCTAGCTCGCGACTTCCTTGTGATGCATGACGATCAGATCAGTGTCATGAACTccttcaaaaatcaaaatatagatataaatgAAAGCTATATCCCAAGTCCAATGCAGACTATAAACCCAAACGAAGAACTAGAATTATGTGAGGAAAATCAGCTCAAGGAGGAATTAACTACTACGAAAATCGTTGACAATCTTCTGGAGCCAAAGGTTGATGAAGTACCCAGGAAAAGTGTTCGAAGATCTAAACGGCAGATAAATGATAAGAAGACATTTTGGTGCAAGGAATGTGATAGCATATGTGCAGATGCGGACGGTTGCACATCTCATAATGTTCAAACAATCGCTGATCAACCGGTTCCTTCGCGAGCGATAGCGACGCTACCAAGTTCTTATTTGTCTATTAACAAATTGAGTTCTAATGGAGCGACGGAACCAGAATATGGAGTTTTCGCGAAGAAAACCATTCGAAGGCGAACTCAGTTTGGACCAATTGAAGGAGTTTTGTGTGCTTATGACGGCACACCATTTATTAACGCTCTacctttattatttgaaaatgatgaCGAAGAATTGTTGAAAATCGATGTATCGAATGAGAACACTTCAAACTGGATGCGTTTCGTGCGACCTGCTCTAACTTACAAAGAACAGAATTTAATAATCTGTCAGCAGAACGAAGGCATAATTTTTCTCACCACGAGAGACATAGTACCAAAGGAGGAATTGAAAGCTGGGCCTAATCCGGAATATGCAAATAAGAGGAATTTGGCCATTCTTGAGCCgaactcaaaaattttagattcaaaCGAAGATTCTTGGCCGTGTTTTGAATGTAATCGCCTCTTCCCAACGtcagaaaaattacaaagtcACATGAACGTTCACGAAAATCCGCGAAACGATTCGAAAGGAAGAAGTAAACGCAGAAAGCTTCACATCGCATCAAACAAACTCTTCAAAGTCGTCAACGATCAGACGGTTCTCTACTCGTGTCCACACTGTTCGAAAGTATTTTCGCGAAGCTATAGTCTGAAACGCCACTTGTTGATACATCCAAATGCAAAAGCGGCTCGCCACGAATGTCCAAAATGTGGAGAAAACTTCCTATATTCTCATAATCTCTGTCGACATACAAAAGTTTGCGAAATCGGGAAATCTAAGGAGAAGGACAAGGACAAGGAAAAAGGGAAAGAGAATTCTGGTCAAAATTCTGCCGAGTGGAAATGCACCGTTTGTGGACTCACTTTTTATAAGGAGTCGCTTTACGATCTTCACAAACTGGTTCACAACACAAACGGGATGGAAAACTGGTGCAAGTTTGTTGTTTGTCCTGAGTGCGGAGTGAAATTCGAGCAGCAGAACGATCTTATTAATCATGTATCGCAACATAGTAAAATGCAAGTGAAAAAAGCTACCAATTCAACTCCTTCGGCTGCTTATAAATGCTTAATGTGTTACAAACGTTTTGCTACTAAAGTTCGACTGCAACAGCACTATTTGGTCCACGGCGCAGAGGATCAAAAACCATTGCCATGTAATATCTGCTTCAAAAGGTTCATGAACAACTCTGCACTCTCATGTCATCTGAAAACTCACAGAAAAGAGAAGCAGATGTTTGAATGTCCAATGTGTAAGGAGCtttttgatcaaattttaatgttgAAAGATCACGTCGAAACTCATCGTAATCAAGACGATACATTTACCTGTCCACACTGCCATcgcaattttacaaaatattccgTTATTCGGAAACACATCAGAGCGCATCATTGCGAACGGAAACATAAGTGTACATTCTGCGTGAAACGTTTTCCCACTGTGGATAAATTACGGATGCATTTGTTGCGACACTCCGATCATAGGGAATTCCAATGTGCTGTTTGCGGAAAGCGCTTCAAGCGGAAGGACAAATTAAAAGAACACGTAACGCGGATGCACAATTCTCAGAGACCTAATAAAGAACCCACTTCGCTGATTCATCAAGCGAAGAAATTTGTGCCAAAGGTTAATCCAACGGAGTACGATCGTTTTGTATACAAATGCCATCAATGTCTGGTTGGTTTCAAAAGAAGAGGAATGCTTGTGAACCATTTAGCGAAAAGACATCCGGATGTACCACCGGAATCTGTACCTGAACTTAATTTACCGATTTTAAGACAAACGAGAGATTATTACTGCCAGTATTGTGAAAAGGTTTACAAGAGTAGTAGTAAACGAAAGGCACACATTATGAAAAACCATCCGGGTGCTGCTTTGCCACCAAGTAATCGTCACAAAGAAACTGACATTCCAGGCCTGCCCAATTCTACATTTAGTCAAACCGTAGGAAGTATTACGACAACTCCTCAAGGTTGTCAATGGTGTCACAAGCAATATGCTAGTAAGGCCAAGCTACTGCAGCATCAGCGTAAAAAGCACTCAACTCTGATGGAACCAGCGGATCAGGTTCCTCGACCGCGAAATCGACCTTCTCATAATCAAACACAACAACTGGTGCTGAGTGACATCAACTTTATAATGACTGACAGCGTCTCGGCCTGCGACGTAGATGAGTTCACTAAACCCAGGATCATCAAAATATCCGATGACGTGGATCTGATTAGCGGTGGACTCGACTCGGTAGGTCAGCAATACGTGCGAATGCGTGACATACGTTGA
Protein Sequence: MDLRGPPEGAPGDPLEISSIEKLPDVSETWSADNIVPSLCEQPKKMNNRLLFLTVEYVEDQTRDYTRMFSVYEPVSYSPRASSPLSEFEHRVSPHDPNMSSAARYSPTPVQLPPSPFQNSVVVLQSPPSPLIPASETNARTNINYAAQLADPADSQDIPQSDNSVDFADGSSGESLVPGNELILMQGSNPELEPSAPPLMLSGLPGSDFALARDFLVMHDDQISVMNSFKNQNIDINESYIPSPMQTINPNEELELCEENQLKEELTTTKIVDNLLEPKVDEVPRKSVRRSKRQINDKKTFWCKECDSICADADGCTSHNVQTIADQPVPSRAIATLPSSYLSINKLSSNGATEPEYGVFAKKTIRRRTQFGPIEGVLCAYDGTPFINALPLLFENDDEELLKIDVSNENTSNWMRFVRPALTYKEQNLIICQQNEGIIFLTTRDIVPKEELKAGPNPEYANKRNLAILEPNSKILDSNEDSWPCFECNRLFPTSEKLQSHMNVHENPRNDSKGRSKRRKLHIASNKLFKVVNDQTVLYSCPHCSKVFSRSYSLKRHLLIHPNAKAARHECPKCGENFLYSHNLCRHTKVCEIGKSKEKDKDKEKGKENSGQNSAEWKCTVCGLTFYKESLYDLHKLVHNTNGMENWCKFVVCPECGVKFEQQNDLINHVSQHSKMQVKKATNSTPSAAYKCLMCYKRFATKVRLQQHYLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHRKEKQMFECPMCKELFDQILMLKDHVETHRNQDDTFTCPHCHRNFTKYSVIRKHIRAHHCERKHKCTFCVKRFPTVDKLRMHLLRHSDHREFQCAVCGKRFKRKDKLKEHVTRMHNSQRPNKEPTSLIHQAKKFVPKVNPTEYDRFVYKCHQCLVGFKRRGMLVNHLAKRHPDVPPESVPELNLPILRQTRDYYCQYCEKVYKSSSKRKAHIMKNHPGAALPPSNRHKETDIPGLPNSTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHSTLMEPADQVPRPRNRPSHNQTQQLVLSDINFIMTDSVSACDVDEFTKPRIIKISDDVDLISGGLDSVGQQYVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00676996;
90% Identity: iTF_01391444; iTF_01394611; iTF_01389685; iTF_01393750; iTF_01390556; iTF_01392255; iTF_00980378; iTF_00201001;
80% Identity: -