Slae009861.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000028.1:3929664-3933572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.11 15 7.0 0.1 2 19 292 309 292 311 0.88 2 14 0.0016 0.22 12.8 0.7 2 23 345 367 345 367 0.92 3 14 6.4e-05 0.0087 17.2 0.3 1 23 373 395 373 395 0.98 4 14 4.4e-06 0.0006 20.8 2.6 1 23 401 423 401 423 0.96 5 14 0.0021 0.29 12.4 3.8 1 23 432 454 432 454 0.96 6 14 7.7e-05 0.01 16.9 1.0 1 23 460 482 460 482 0.97 7 14 1.2e-06 0.00017 22.6 0.8 1 23 487 509 487 509 0.98 8 14 0.0026 0.35 12.1 3.6 1 23 516 538 516 538 0.98 9 14 2.1e-05 0.0028 18.7 1.3 2 23 558 579 557 579 0.96 10 14 0.00032 0.044 15.0 1.3 2 23 587 609 586 609 0.96 11 14 0.045 6 8.2 0.4 1 23 615 637 615 637 0.95 12 14 0.00051 0.069 14.4 4.9 1 23 643 665 643 665 0.99 13 14 1.9e-05 0.0026 18.8 1.8 1 23 671 693 671 693 0.96 14 14 0.00013 0.017 16.3 2.9 1 23 699 721 699 721 0.97
Sequence Information
- Coding Sequence
- ATGGCCGACATGGCTGTCGCCTGTCCGCTGTCTGCTGCTGAAGGCGTCAGGCTCTCAATTTTCGGTCGAgttcatttaaaaaaattatatttcagagATAAACACAATGAAGCAGCAGACTCTCAACTTCTTTGTAACATGAGCGACCAACTTGAAAATTACGAACAAATGACAAGATTTATTACTAATGCATGTCGCGTTTGCGGCGAAGATATATCCGAAGGAATCGAGATATTCTCCAATAGGGGAAGTGAATTAAGACTGAAGGAGAGACTAGAACTGTTCTTTCCAATCCAACTGCAGCTCGaaacattttctcaaaaagtaTGCATGAACTGTTGTAATACACTGGAGAACACCCACACTTTTGCTCTCAAGTGTTTACAAACAGACATAAAGTTCAGGAGATATTTGAAGCCCGATAAAGAAcCATTACATGATAgaagatttattaaattaggTTGCTCCatcgaaaataatattgaagaagACTCTGATGCTGATAAAATTTATCTGGGGTACTTAATAAGTTTAgatcaaaatcaaataaatttagaattggATCAATCGGAAATTATGTCTCACCATTCGGAATTGAGCGACACTGCCTTGCAAAATCTAAAGTTTCCGGACGGTTCTGATAATGAGGTTCACCTAGGCTTGACTACTTTTTTCCAAGTCCTTCCTGAACCTGAAACAAGTGACAACATTTCTATTCAGTGTGAATGCGGCGGTTGCTTCAAAacacaagaaatttttgataatcaTAAGACAGTCTGTGCTGAAGGAgaactgattttaaaagaatcttcCCGTTGCGatattgaaaatgaagaaatgcaAGCGATAACAGATTTCCAACTCTCCATGAACACTTGCAACATTTGTAAACAAGTCTTCGACTCTAAATTGCTTCTAGATGAACATTCTATTCACTGTGAACCCTGCATTCTAAATGTGGAGGGTTCCGATGCGTTAGATTCAGCATTCCGTGAGGTTGATAGTTTATTCAATCCATCTGCAATGGACCGAACATGTGGCTATTGTCAGATGTTCTTCGTTACTCGAAAAGAGTTACAAACTCATGTGTCAGAAACTCATGCGGGtcagaatttatttaagtgTCAGTTTTGTGACAAAGCCTATGAAAAATGGTCGAGTTTGGATATTCACGTGGCTACGCATCGATCGGATACACCATATCTTTGTGATCTATGTGGAAAAAGCTTCAaacattcaaataatttgagaGGGCACAAAAGGATTCATTTGGAGGATTCGAAGAAGAAGAGACATATTTGTGATATATGCGGAAACGCTTTTAGGTCtagGTTTCATCTGGGCGAACATATGCACCAGCACACTGGAAATAAGCCATATGCTTGTGATCAATGTGGAAAAGCATTCTTCAAGCGAATTCAATTAAGGCAACATAAACTTTCTCATGGAGTTAACAAACACGAATGTCCAGTCTGTGGGGTGACATTTAATAGAAGAGGAAACATGAAAGCCCATCTTAAAAGGCACGAAAAAGGCGATGGACATTATACTTGTAGTatCTGCGAGCAACAGTGTAAGTCGAtgagtgaattaaaattacaccGGAAGCAGCACACTGATTCCGATATCATCGAAAgtgtaaaaaagaaatcagCGGACAAAATTATCTGGTCATGTAAAACATGCTCTAAggtattttcaaaacaaaatttgcttCGAAATCACGAACGTGTTCATTTCGTTGATAAGTTCAACATTGAATGCAACGAATGCGGGAAGAAATTATCCAGTAAAACCTCTCTGTCTTATCACAAGAAGTCGAGTCATTCGAACGAAAGACCTCACGTATGTCAATTTTGTGGAGAAGCTTTCATGTCCAAGGATGTGAGGCTTATACATGAAAGAATTCACACCGGAGAACGTCCATATACCtgtaaaatttgcaatatgCAGTACAGATGTTCGAGCAATTTAAGTCAACATATGAAAACGCATTCAGGAATAAGGCCCCACATTTGTAGTTTTTGCAACAAAAGTTTCATCAGAAAAAATGCATTGACAATCCACGAAAGAATTCATACAAGTATCAAACCATTTTGCTGCTCAGACTGCGATAAAACTTTCTCACTGAAAAACGTCATGATAAAGCATATGGAAACACATCAAGCAAAGTCTATTCAAGAAAAGCAATGCGACGAAATTTTCACCCTTGCAAAAAACAATCTGGAAGAGCTTGTTGAACCTACACAATTCCAACCTCAATCGTCCATTGTTCAAAGCTACGTCATCGTTCGTCAACAGTTAGGTTCTTACACTCTTAATGTTAGCGGAAAAATCACGGAACTCGATGAAGAGCCAAGAGATTTGTAG
- Protein Sequence
- MADMAVACPLSAAEGVRLSIFGRVHLKKLYFRDKHNEAADSQLLCNMSDQLENYEQMTRFITNACRVCGEDISEGIEIFSNRGSELRLKERLELFFPIQLQLETFSQKVCMNCCNTLENTHTFALKCLQTDIKFRRYLKPDKEPLHDRRFIKLGCSIENNIEEDSDADKIYLGYLISLDQNQINLELDQSEIMSHHSELSDTALQNLKFPDGSDNEVHLGLTTFFQVLPEPETSDNISIQCECGGCFKTQEIFDNHKTVCAEGELILKESSRCDIENEEMQAITDFQLSMNTCNICKQVFDSKLLLDEHSIHCEPCILNVEGSDALDSAFREVDSLFNPSAMDRTCGYCQMFFVTRKELQTHVSETHAGQNLFKCQFCDKAYEKWSSLDIHVATHRSDTPYLCDLCGKSFKHSNNLRGHKRIHLEDSKKKRHICDICGNAFRSRFHLGEHMHQHTGNKPYACDQCGKAFFKRIQLRQHKLSHGVNKHECPVCGVTFNRRGNMKAHLKRHEKGDGHYTCSICEQQCKSMSELKLHRKQHTDSDIIESVKKKSADKIIWSCKTCSKVFSKQNLLRNHERVHFVDKFNIECNECGKKLSSKTSLSYHKKSSHSNERPHVCQFCGEAFMSKDVRLIHERIHTGERPYTCKICNMQYRCSSNLSQHMKTHSGIRPHICSFCNKSFIRKNALTIHERIHTSIKPFCCSDCDKTFSLKNVMIKHMETHQAKSIQEKQCDEIFTLAKNNLEELVEPTQFQPQSSIVQSYVIVRQQLGSYTLNVSGKITELDEEPRDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392215;
- 90% Identity
- iTF_01393731; iTF_01389657;
- 80% Identity
- -