Slae005044.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000009.1:2825813-2827276[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.7e-06 0.00064 20.7 0.5 2 23 74 95 73 95 0.97 2 13 2.9e-05 0.004 18.3 2.2 1 23 101 123 101 123 0.96 3 13 8.1e-05 0.011 16.9 0.2 2 23 130 151 129 151 0.97 4 13 1.7e-07 2.3e-05 25.3 0.9 1 23 169 191 169 191 0.98 5 13 2.7e-07 3.7e-05 24.6 1.2 1 23 197 219 197 219 0.98 6 13 5.9e-06 0.0008 20.4 1.6 1 23 225 247 225 247 0.97 7 13 0.00041 0.055 14.7 0.2 1 23 253 275 253 275 0.99 8 13 8.2e-05 0.011 16.8 0.2 3 23 283 304 281 304 0.92 9 13 3.1e-05 0.0043 18.2 1.5 1 23 310 332 310 332 0.98 10 13 0.0002 0.027 15.6 4.7 1 23 338 360 338 360 0.98 11 13 2.3e-06 0.00031 21.7 0.5 1 23 366 389 366 389 0.96 12 13 7.3e-06 0.00099 20.2 2.1 3 23 397 417 395 417 0.95 13 13 1.8e-06 0.00024 22.1 4.5 1 23 423 445 423 445 0.99
Sequence Information
- Coding Sequence
- ATGAGTAAAGCTCACAAGGAAAAGTCTGAAAACCGCAATAGTAAATTTGGCACAGAAATCGAAGATCCTAACCAGAAAGAGAATCCTGCAAGTAACAATCCGCTTTCGAAGGAATCCAAGGAAATTTCTCccgaaaaagtttcaaaatctaAACAACCGACTCttcgaaaaaaatcaaaccTCAGGAACAAGCGGCTGAAGTTGAACGGTACATTGTTAAAATGTAGCTACTGCGACCAAATATTCGAATTCCCGAGTGTTTTGAAAAGGCACATTCGTTCGCATACGAACGAGAGACCCTACGTATGTAGGGTTTGCAACAAAAGCTTCAAGCAGCTCGGACATCTTAGCCAGCATTCTGTAACTCACACAGATTACAGATCTCTGCAATGTGATCAATGTGGTGTCAGATTTGAATCACTAGATGCTCTCAAGATTCATTTCCAGACCCACTCGAGTGAATCGAATACAAAGTTAAACCCTAATCTTTCAACGACTCGTCTTTTCGAATGCGACATctgtaaaaaagtatttaccACTAAAAGCGTTTTGGAGAGGCATATCTTCACTCATACACacgaaagaaattttgaatgtgAAGTGTGTGGAAAACGATTCAAGCAGTCAGGTCATGTGAAATCTCATATGCTCGTTCACACAGGAGAACGAAAATTCTCCTGCACTATCTGTTCAAAACGTTTTAGTTTggcaaattctttaaagaaacATATGTACATTCACAATGGAGACAAACCCTACCAATGTGATGTTTGTGGTGCAAGATTTCTAGAGAAAAGAAATCTGAATGGACATCTAATGACCCACACGAATGAAAAACCATTTGGTTGCAAAATCTGTGGGAAAAGATATACTTTGGCTGATACTTTAAGACGTCACGTGAGTGCTGCTCACGAAGATGGAAGAACATATCAGTGTGAACTGTGTGCGAAGATGTTTAAGCAATTGGCACATTTATCAGTTCATAAAAAAGTTCATAATGATGAAAGACCTTTTCAATGCCATCTTTGCGAGAAGAACTTTAagcataaaaatgttttgaagtCTCATTTGGCTATTCACGCAAATGTTAGGCCTTTTGAATGCGATGAGTGCAAAGCTACTTTTGTTAGAAAGACGAATTTGCAGACTCATATTACTTCAGCGCATATGAATGAAAGACCTCATCTCTGTACTATTTGTGGGAAAAAGTTCAAACAAGTCAGTCACCTCAATGGGCACATTATTGTTCACAGCAATTCTATGCCTTATCAGTGTGATTTCTGTGATCGGAGATGTAACAGGTTGGATAATCTAAAAAAACATATGCGGCTTCACAcgaaagtaaataaaagtgATACATGTGTTAAAAAGGTCGAAGAAAATATCCTTAGGACTGAAATTATTCCGATGATTCGTAAAGAAGTTCCAGCGGAAGGCTTCCATAATTTTCgcaaaaagatttaa
- Protein Sequence
- MSKAHKEKSENRNSKFGTEIEDPNQKENPASNNPLSKESKEISPEKVSKSKQPTLRKKSNLRNKRLKLNGTLLKCSYCDQIFEFPSVLKRHIRSHTNERPYVCRVCNKSFKQLGHLSQHSVTHTDYRSLQCDQCGVRFESLDALKIHFQTHSSESNTKLNPNLSTTRLFECDICKKVFTTKSVLERHIFTHTHERNFECEVCGKRFKQSGHVKSHMLVHTGERKFSCTICSKRFSLANSLKKHMYIHNGDKPYQCDVCGARFLEKRNLNGHLMTHTNEKPFGCKICGKRYTLADTLRRHVSAAHEDGRTYQCELCAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHITSAHMNERPHLCTICGKKFKQVSHLNGHIIVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKVNKSDTCVKKVEENILRTEIIPMIRKEVPAEGFHNFRKKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883228;
- 90% Identity
- -
- 80% Identity
- -