Lsyp010982.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065470.1:30787563-30788831[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4e-05 0.0028 19.3 0.5 2 23 25 46 24 46 0.97 2 13 1.6e-06 0.00032 22.3 1.5 1 23 52 74 52 74 0.98 3 13 0.0004 0.077 14.8 0.1 2 23 81 102 80 102 0.95 4 13 1.2e-07 2.3e-05 25.9 0.5 1 23 120 142 120 142 0.97 5 13 2.6e-07 5e-05 24.8 1.3 1 23 148 170 148 170 0.98 6 13 5.2e-06 0.001 20.7 1.0 1 23 176 198 176 198 0.98 7 13 0.00059 0.11 14.3 0.2 1 23 204 226 204 226 0.99 8 13 7.9e-06 0.0015 20.2 0.2 1 23 232 255 232 255 0.92 9 13 8.3e-06 0.0016 20.1 1.3 1 23 261 283 261 283 0.98 10 13 0.00018 0.035 15.9 4.7 1 23 289 311 289 311 0.98 11 13 1.8e-06 0.00036 22.1 0.2 1 23 317 340 317 340 0.96 12 13 1.9e-07 3.7e-05 25.2 1.0 1 23 346 368 346 368 0.98 13 13 6.5e-07 0.00013 23.6 4.2 1 23 374 396 374 396 0.99
Sequence Information
- Coding Sequence
- atgaaaagtgTGTCAGTCAATCGAAAAAAAACCAAACAACGTGATAAACGAGGGAAATTAAACGAAACATTAGAATGCAGTTATTGTGagcaaaaattcgaatttccgAGTGTATTAAAAAGACACATTCGTTCGCATACAAATGAACGACCTTACGTTTGTGAAATTtgcaataaaagttttaaacaacTCGGTCATCTCAGTCAACATTCGATAACTCACACCGATTACAAATCACTGCAATGCAATCAATGCGGCGTTAAATTCGAATCTCTAGACGCTTTAAAAATCCACTCGGAAATTCATCCCCAAGATTCGTTTCtcaaaaaaagtacaaatatCCCAAAAAATCGTCTCTTCGATTGTGACATTTGCAAAAAAGTCTTTTCCACCAAAAGCGTTTTGGAAAGGCACATATTAACCCACACGCAAGAACGACAATTCGAATGCGACGTTTGTGGTAAACGATTCAAACAATCAGGACACGTCAAGTCTCACATGTTGGTTCACACCGGCGAACGTCGCTTCCAATGTGCAATTTGCTCGAAACGCTTCAGTTTggcaaattcgttaaaaaaacaCATGTACATTCACAATGGCGATAAACCCTATCAATGCGACGTTTGCGGTGCAAGATTTCTCGAGAAAAGAAATCTCAACGGTCACCTCCTGACACACACGAATGAAAAACCCTTTGTCTGTAAAATTTGTGGCAAAAAATACACCCTCGCCGATACTTTACGAAGACACGTGAGTGCCGCCCACGAGGATGGACGAACTTATCAATGTGAAATTTGtgcaaaaatgtttaaacaattggcaCATTTGTCGGTGCATAAAAAAGTGCACACTGACGAGAGACCATTTCAATGTCATCtttgtgaaaagaattttaaacacAAGAATGTTTTGAAATCTCATTTGGCCATTCACGCGAATGTTCGTCCTTTTGAGTGTGATGAATGTAAAGCGACTTTTGTTCGTAAAACAAACCTCCAAACGCATATCGCATCGGCACACATGAATGAGAGGCCGTACACTTGTAATATTTGtgggaaaaaattcaaacagGTTAGTCATTTAAATGGGCATATTATTGTGCACAGTAATTCAATGCCATATCAGTGTGATTTTTGTGATCGAAGATGTAATCGATTGGATAATCTCAAGAAACACATGAGAATCCATACGAAAACTTCGAAAGAGCTTAATAATAGTGTAATTGTTGCTGGGAGAATGACAAATTTCAATactcaaattaatgtttaa
- Protein Sequence
- MKSVSVNRKKTKQRDKRGKLNETLECSYCEQKFEFPSVLKRHIRSHTNERPYVCEICNKSFKQLGHLSQHSITHTDYKSLQCNQCGVKFESLDALKIHSEIHPQDSFLKKSTNIPKNRLFDCDICKKVFSTKSVLERHILTHTQERQFECDVCGKRFKQSGHVKSHMLVHTGERRFQCAICSKRFSLANSLKKHMYIHNGDKPYQCDVCGARFLEKRNLNGHLLTHTNEKPFVCKICGKKYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHTDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHIASAHMNERPYTCNICGKKFKQVSHLNGHIIVHSNSMPYQCDFCDRRCNRLDNLKKHMRIHTKTSKELNNSVIVAGRMTNFNTQINV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392953;
- 90% Identity
- -
- 80% Identity
- -