Slae009513.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus laeviventris
Gene Symbol
ECU06_1150
Assembly
GCA_032275145.1
Location
JAUESI010000028.1:494866-506867[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.00028 0.038 15.2 0.1 2 23 317 338 316 338 0.96
2 23 1.5e-05 0.0021 19.1 0.8 1 23 344 366 344 366 0.98
3 23 2.4e-06 0.00032 21.7 1.1 1 23 372 395 372 395 0.95
4 23 0.022 3 9.2 0.4 1 23 401 423 401 423 0.98
5 23 0.0021 0.28 12.4 2.6 1 23 429 451 429 451 0.94
6 23 0.0004 0.054 14.7 3.0 1 23 457 479 457 479 0.97
7 23 5e-05 0.0068 17.5 2.3 1 21 485 505 485 506 0.94
8 23 0.00037 0.05 14.8 0.3 1 20 555 574 555 576 0.95
9 23 4 5.5e+02 2.1 0.5 1 21 609 629 609 632 0.79
10 23 0.00081 0.11 13.7 2.5 1 23 662 684 662 684 0.98
11 23 1.5e-05 0.0021 19.1 1.6 1 23 690 713 690 713 0.97
12 23 1.3e-06 0.00017 22.5 0.4 1 23 719 741 719 741 0.98
13 23 1.6e-07 2.1e-05 25.4 0.6 1 23 747 769 747 769 0.99
14 23 5.2e-05 0.0071 17.5 1.5 1 23 775 797 775 797 0.98
15 23 0.00014 0.019 16.1 2.4 1 23 803 825 803 825 0.97
16 23 8.4e-06 0.0011 20.0 1.3 2 23 832 854 831 854 0.96
17 23 0.013 1.8 9.9 2.6 1 23 926 948 926 948 0.98
18 23 3.5e-07 4.8e-05 24.3 1.2 1 23 954 977 954 977 0.96
19 23 0.00055 0.074 14.2 0.3 1 23 983 1005 983 1005 0.97
20 23 2.4e-06 0.00033 21.7 1.9 1 23 1011 1033 1011 1033 0.96
21 23 4e-05 0.0054 17.8 2.1 3 23 1041 1061 1041 1061 0.99
22 23 5.2e-05 0.0071 17.5 5.0 1 23 1067 1089 1067 1089 0.97
23 23 0.00033 0.045 14.9 1.7 1 23 1095 1118 1095 1118 0.97

Sequence Information

Coding Sequence
ATGCCTGATGGAAAAATTGTCTccatggaaaaagaaaaaccaaatttgaaggaaaatgCAGTGCCATCCGTGTTTCCAAAAAAGGTACTGGAGTACGCACACTTCCTGGGAGATAGGAAGGTAACTGACAATGGACAACATCCACATGAAGATATAAGAGatttaatggAAACGCGGGATTCAATGATTCTTCCTTCATGCGAAGATGAAGATGAAGTAGTTGGGAAGGCTAAGACTAGGGACAtcgaagaagaagaatattttctgGTGTCCGATATTCCTGAGAGTATGGAGGAAGAAGAGATGCAGGTCCTCAAcgaggaagaagaaaatcCATCGATACCTGAAATGTGCAGGATATGCGCGACTGTCAACGGCTATactattccaatttttaaaggagAAGGACTCGAACATGATTTATGTAGCAAGATAAATAAGCATCTACCTATAGAAGTCACTGAAAAGGACACTTTACCTCTTAAAGTATGTTATCACTGTGCCGCTACTTTGCTAGCATGGGACGATCTTAAAGAAGGTTGTTTAGAAGCTCAAAAACAACTTTTACGACTCCAGGCACAACAAGTGTCTTCAGCAGGCGAAGAAGCGAGACTTGAGCAGCTTGAAgtatctgaaaatttcaaaggagaACATGTGgAGGGGAACCAACAAAAAGACTTAATTGATCTCAAAAACGCTGGAGGCTCAGATTCTGAAAGGTCCAGTAGAGCCCAGACATCATTTAAAGTATTCCTTGATACGCAAAATATATTTCGGAGGCCTTTGAATTCGACAAACACGGATAAAATATCGGATCTGCAAATCCCAATTGGTGAAGAGCAGACAGATGACGTGAAAGATGATGTAAAACCGGAAGAAGGGgaagaatttcaggaatttcaactCGATTCAGAAGTCGCCAACAGTGACAGTGAGGAATTTCActggaaatgtaaaatttgCAACGAGGAATTCAATTCTGCGATTGAATTAAATGACCACGTAAAACTTCACGATTCTAAAGAGTCTTATAGATGTCGAGAATGCGGAAAAGGCTTCAAACTCAAAGATTCGTACGTCCGCCATGCTCGAATTCACAAAGATGAACGTCCTTTTACTTGCCATGTCTGTGGAAAACAATTCCGAGATTCTGGAGGACTTTCCCGTCACTTGAAGGACGTTCATGCCAAAGTCAAAAATTTTCCCTGCGATTTGTGTGAAAGCAGTTTCGCTTCGAAAGCAACTAGAGATGATCATCGAAGAACTCACACTGGTGAAAGACCCTACATTTGTGATTGTTGTGGAAAAACATTCAAGTCTAAGGCTTCTCTTTATATTCATAGCAAACTTCATACAGATGAGTTTCCTCATCCTTGTTCCTATTGCACGAAGAAATTTCGACGAAGGCAAGAAATGCTGGCTCACGTGACAACTCACACTGGCGAGAAAAACTTTGCTTGTGATATTTGTCACAAACGTTTCAGGGTGAAGTCAGAACTCATGAGACATCGGTGCGGTGCTCCGAGGACTTCATCATTCGCGACCTACTGTTCCGTTAAGACAAAGAAAACCCAGAGAAGATTAGAATCGGCAAAACCcaaggagtttcaaaaaacTGCAGAAGTATTTAATCAGAATTCAACTCCTTCAAAAGTCTTTCAATATTCCTGTGAATACTGTGGATCGTCTTTCGAGAGAAAATCCCCTTTGAAGTATCATCTGATCAACTGTACTTTAAATACCGAACTCTTCAAAATTGAAGACAAGCAACGTGAGAAAGAAAATGACTCTTCTAATCGTCACAGAAGGGTGCGTCAAAAATTATATCCTTGTATGCACTGCGATTACGAAGCcaagagaaaaaagattttagatcTTCATACGTTGGAAGTTCACCCAGAGTTGTTAccttcgaaaaataaaagaggcATTGACAAACAAGCAGTTGATCAAGCAAAAATGGAAGTTAACGGTAAAATTTATTACCACTGTACAGACTGTGGTAAAAATCTCTACTCTCCCTACACTTTTTCTTGGCACAAACGAATCCACACTGGGGAAAGACCCTTTACGTGTCATCTTTGTGGAAAGCAATTCCGAGTGAATCAAGGCTTAGCGCGTCACTTGCGAGAAACCCACGccggaattaaaaaatttccctgCGATATTTGCGGCCGTATGTTTACTACGAAACGAAACGTTGAAGAACACAGAAGAATTCACACTGGCGAGAGACCTTATGTCTGCAATATTTGCGGAAAAGCATTCAAACAAAAGGCGTCACTATTTGTTCATAATCGCACTCATTCGGATTTGTTTCCTTTTAAGTGTTCTTACTGTAATCAAGGATTTCGAACGAAAACCCCGTTGATGGTTCACATAACAAAACACACTGGCGAAAAACCATACGCTTGTGACATATGCAATCGTCATTTTAGAATCAAGTTTGAGTTGAAAAGACATCGGCTTGTTCACTTTGATGAGAAACCCTGGCAGTGCACTGACTGCGATCAGTCTTTTCGGCAGAAGAGGTACCTTGTTAATCACAGAAAAGTTAACCACGAGTCAATTGCGAgagaGTCCGAGTTGAATCAAAGAAAGAATAGGTTTATCTTCATCTCAATGCCGGAGATAGATGATGACGAGGACGTGAAAGAGGATCTCCCGCCAACCAAAGCTAAACGGAAACGCAAACATCAACGAAAAGAGGATCTCACCTTGGATCAGCGGCTGGAAATCAATGAAGCCAAGGTGGTGATCGAGGGGATAACGTATTACAAATGTCGCGAGTGTTCCAAGAATCTCAGGAGTGTTTACAACTATTTCCTTCATCGAAGAGGTCATCTTGGCGAGCGACCTTTTACTTGTCACAAATGTGGAAAAAGCTTCCCTTCACTTTCTGGGCTCAATCGACACGTTCGAGATGTTCACATGGGGTTGAAAAAGCACGAATGTGATATTTGCGGGAGACCTTTTGCCTCCAGAGTTGCTAAAAACGAACACAGACTGACACACACTGGGGAAAGACCCTACGTCTGTGAAATTTGCGGAAAGACCTTCACCCAGAAAGCATCTCTGCATGTTCACAAACAATTCCACTCGGAGGATTTGTCTCATTGGTGCACAATGTGCACTCGAGGATTCAAAAGAAAGCAGGAACTCAACAAGCACATCTTGACACACACAGGGCAAAAACCCTTTGCTTGTGATATTTGTGGAAAGTGTTTTCGCAGCCAAGGTTGCATCAGTCGACACAAAAGGACTCATAGTCAGCTGAAGAGTCACAAGTGTGACTTGTGTGGCGCCGCTTTTGGCCAGGAACGGTATCTTAAAAATCACCGGCAGACCAAACACAAAAATTCTtga
Protein Sequence
MPDGKIVSMEKEKPNLKENAVPSVFPKKVLEYAHFLGDRKVTDNGQHPHEDIRDLMETRDSMILPSCEDEDEVVGKAKTRDIEEEEYFLVSDIPESMEEEEMQVLNEEEENPSIPEMCRICATVNGYTIPIFKGEGLEHDLCSKINKHLPIEVTEKDTLPLKVCYHCAATLLAWDDLKEGCLEAQKQLLRLQAQQVSSAGEEARLEQLEVSENFKGEHVEGNQQKDLIDLKNAGGSDSERSSRAQTSFKVFLDTQNIFRRPLNSTNTDKISDLQIPIGEEQTDDVKDDVKPEEGEEFQEFQLDSEVANSDSEEFHWKCKICNEEFNSAIELNDHVKLHDSKESYRCRECGKGFKLKDSYVRHARIHKDERPFTCHVCGKQFRDSGGLSRHLKDVHAKVKNFPCDLCESSFASKATRDDHRRTHTGERPYICDCCGKTFKSKASLYIHSKLHTDEFPHPCSYCTKKFRRRQEMLAHVTTHTGEKNFACDICHKRFRVKSELMRHRCGAPRTSSFATYCSVKTKKTQRRLESAKPKEFQKTAEVFNQNSTPSKVFQYSCEYCGSSFERKSPLKYHLINCTLNTELFKIEDKQREKENDSSNRHRRVRQKLYPCMHCDYEAKRKKILDLHTLEVHPELLPSKNKRGIDKQAVDQAKMEVNGKIYYHCTDCGKNLYSPYTFSWHKRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDICGRMFTTKRNVEEHRRIHTGERPYVCNICGKAFKQKASLFVHNRTHSDLFPFKCSYCNQGFRTKTPLMVHITKHTGEKPYACDICNRHFRIKFELKRHRLVHFDEKPWQCTDCDQSFRQKRYLVNHRKVNHESIARESELNQRKNRFIFISMPEIDDDEDVKEDLPPTKAKRKRKHQRKEDLTLDQRLEINEAKVVIEGITYYKCRECSKNLRSVYNYFLHRRGHLGERPFTCHKCGKSFPSLSGLNRHVRDVHMGLKKHECDICGRPFASRVAKNEHRLTHTGERPYVCEICGKTFTQKASLHVHKQFHSEDLSHWCTMCTRGFKRKQELNKHILTHTGQKPFACDICGKCFRSQGCISRHKRTHSQLKSHKCDLCGAAFGQERYLKNHRQTKHKNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01389644;
90% Identity
-
80% Identity
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