Basic Information

Insect: Synergus japonicus
Gene Symbol: mecom-b
Assembly: GCA_900474275.1
Location: UCOH01006403.1:42215-58389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.023 2.4 9.2 1.2 2 23 106 128 105 128 0.94

2 8 7.4e-05 0.0076 17.1 0.9 2 23 165 191 164 192 0.87

3 8 4.1e-06 0.00042 21.0 2.6 1 23 198 220 198 220 0.95

4 8 0.00045 0.046 14.6 7.2 1 23 226 248 226 248 0.98

5 8 5.9e-05 0.0061 17.4 3.5 2 21 256 275 255 276 0.94

6 8 4e-09 4.1e-07 30.5 1.3 1 23 635 657 635 657 0.99

7 8 3.1e-07 3.2e-05 24.5 1.7 1 23 663 686 663 686 0.97

8 8 2.5e-06 0.00026 21.7 3.4 1 23 692 714 692 714 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.023	2.4	9.2	1.2	2	23	106	128	105	128	0.94
2	8	7.4e-05	0.0076	17.1	0.9	2	23	165	191	164	192	0.87
3	8	4.1e-06	0.00042	21.0	2.6	1	23	198	220	198	220	0.95
4	8	0.00045	0.046	14.6	7.2	1	23	226	248	226	248	0.98
5	8	5.9e-05	0.0061	17.4	3.5	2	21	256	275	255	276	0.94
6	8	4e-09	4.1e-07	30.5	1.3	1	23	635	657	635	657	0.99
7	8	3.1e-07	3.2e-05	24.5	1.7	1	23	663	686	663	686	0.97
8	8	2.5e-06	0.00026	21.7	3.4	1	23	692	714	692	714	0.99

Sequence Information

Coding Sequence: GTTCGAGTTCCAGGAAGTGGAGCAAGGGGATGGTTCGATGCCTCCCATGAATCGAGTAATTGGCTCAAGTACATTCGAAGCACAGCGAGTCCGCATACAGTCAACATGCGACATGTTCTCATCGGAGGAGAgGTCGTGTACGAGACAGTACGAGAAGTGGCAGCCGGTGAAGAGTTATTGTTAGGACTTCGAGAACCTCTTCAGCTTCCAGATTTGTTGGGAGAAAACACGACCGAGGACAGGAACGATCGAGAGACCGcTTCTCAGCATAGCGAACCAATAGATGAAAACAGAGATGAAGACGATGGGAATATAAAATGTACAGTTTGCGACAAACCGTTCCAGGATATTGACGTATTGGACCATCACCTTGTAACCTGTCACCGCTACCCAGCAGAGCAGCATCTCTGTGACAATTGTCCAAGTGGCTACGCCTGGCGACCATTACTCGTCCGTCATCGTGCAATCGTCCACGGAGATTTTCGAAAATACCTTTGCGAAAATTGTCCAAAGGTTGCAACTTCGCAGGTTTTCACCGATCCATCGAATCTTCAGCGACACATCAGGTCCCATCACGTCGGAGCCAGAAGCCACGCTTGCACCGAATGTGGAAAAACCTTTGCAACAAGTTCTGGACTCAAGCAACATACTCACATCCATAGCAGTGTAAAGCCCTTCCATTGTGAAGTTTGCCTAAAGTCTTACACCCAATTTTCAAATCTATGTCGTCACAAACGGATGCACGCAGTTTGCCGCACTCCAAGCAAATGCCATAAGTGTGGTCAATCCTTCAATACTTCCACATCCCTCACCAAACACAAGAAATATTGCGATTCGACACCACCACCTAGATTAGGAACGATGCCTCAGCTTCCAACATCCACGACAAGTCCGTTTTTGGTCTATCCAAGAACACCAGTTTCCCTACCTGGGGGACTTCCATTTTATCAATCAAGTCTCATGAGCCACTATCATGGAATGTTTCCCGGTGCGCCTAACTTCCTCAACTCACCACTTCTGTACCAACATCAGAAAGTCGAGGAAGCCGAGAAACGGATTGAGAGTCCCAAGAAGGAACGATTCACCCCACCCAGAGTTCCTCAACAGAGCAAGATCTCTCCCTATACTGccgaagaagaagaagtaacCTCGACTTTCAGACCTTCGTCAGCAAGACCTCTTCAGCCGACTCCCGAACCTCCACAGGAGGAGAAACTCGATCTCTCGAGAACCGAGAACAAGGAAGGGAttctgaaagaagaaaaacttgAAGAAACAGATCAACCCCTGGATCTCAGTCTGCAGAAAAGGGAGAGGACCACTTCTAATGAATTCAGAGTCTCAACACCTAAAAAGACTTCCCCTTCCCCGATTCCCGTGAAAGAAGAACCTCTGAAGACCAGAAAAAGGGAAAGAACCGACTCGGGCGATTCTAGAGATTCTACACCTAAAATAAAAGCACACTCCCCTCCAATCGCTCCTGAAGAACCACATATTGATCTCAAGCAAGAAGTAATAAcgcctcctcctcctcctcctcctccaccTCTAAGAACTCCTCTCGCTTCCGATCAGCCGAATCCACCACATATGGCTTACCACAGACCAATTCATCCCATGTTTCTAGAAGCGATGTACCGCCAACCAGCTGGAAATTTCGCGGGATTTTCGGGGGCACCTCCAAATGGTGCGGAATCTCGACTAATGCCTCCACTTCCTCCTTTTGGTCCGCCTCGTGGATTTCCTTTTTTAAGACCACTCATGAACGGTTTCAATAGTGGTCGACCAAGTTATGACCTCCTACCGACATCCTCCTTAGGACCTTTTCCTGGAGTGAAGCCCTATCAAGATGCTGTTATGCCTCATCATCACAATCATCATCACGGGAAGATGAAGGATCGCTACACCTGCAAATTCTGTGGGAAAGTCTTTCCAAGATCAGCGAATCTCACGAGACACTTGAGAACTCACACTGGAGAACAGCCCTACAAATGCAAATACTGCGAAAGGTCTTTCAGTATATCTAGCAATCTTCAAAGACATGTCAGAAATATTCACGACAAGCAAAGACCTTTCAAGTGTCCTCTATGTGATCGCTGCTTCGGACAACAGACAAATTTGGACCGACATTTAAAGAAACATGAAGCTGATGACGGAAGTGGTGTTGTTGCTGTGGCTGACTCACCAGGAAGTAGTAATGAAAACGAAAGGGAGGACACTTGTTTTGACGAGATTAGATCTTTTATGGGGAAAATTACTTATGGAGGTGAAGGTTACGGACTTCCTTATCATCCCGCATATTTACCTGGGAGGCTGCATGAAATGCACGAACCAAAGGGTGAATTTGACGATGAAGAGGACAGCGAGGGAGCAGTTTCTCCAGTTGAAGAAGGCGATGCTTTATCTCCAATTCCAAAGGAAATTGATGCACCAGAATTTGAtcttaaattaagaaataagcAAAAGATGCTCAATAATAACACGGCTGAGCCGGTGATTGAGGTTTCCACGTAG
Protein Sequence: VRVPGSGARGWFDASHESSNWLKYIRSTASPHTVNMRHVLIGGEVVYETVREVAAGEELLLGLREPLQLPDLLGENTTEDRNDRETASQHSEPIDENRDEDDGNIKCTVCDKPFQDIDVLDHHLVTCHRYPAEQHLCDNCPSGYAWRPLLVRHRAIVHGDFRKYLCENCPKVATSQVFTDPSNLQRHIRSHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFHCEVCLKSYTQFSNLCRHKRMHAVCRTPSKCHKCGQSFNTSTSLTKHKKYCDSTPPPRLGTMPQLPTSTTSPFLVYPRTPVSLPGGLPFYQSSLMSHYHGMFPGAPNFLNSPLLYQHQKVEEAEKRIESPKKERFTPPRVPQQSKISPYTAEEEEVTSTFRPSSARPLQPTPEPPQEEKLDLSRTENKEGILKEEKLEETDQPLDLSLQKRERTTSNEFRVSTPKKTSPSPIPVKEEPLKTRKRERTDSGDSRDSTPKIKAHSPPIAPEEPHIDLKQEVITPPPPPPPPPLRTPLASDQPNPPHMAYHRPIHPMFLEAMYRQPAGNFAGFSGAPPNGAESRLMPPLPPFGPPRGFPFLRPLMNGFNSGRPSYDLLPTSSLGPFPGVKPYQDAVMPHHHNHHHGKMKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGVVAVADSPGSSNENEREDTCFDEIRSFMGKITYGGEGYGLPYHPAYLPGRLHEMHEPKGEFDDEEDSEGAVSPVEEGDALSPIPKEIDAPEFDLKLRNKQKMLNNNTAEPVIEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01393755;
90% Identity: iTF_01390566; iTF_01394599; iTF_01391432; iTF_01389675;
80% Identity: -