Sjap003837.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01011905.1:20549-33115[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 7.3e-06 0.00075 20.2 1.0 1 23 226 248 226 248 0.98 2 29 0.03 3.1 8.9 1.4 1 23 271 294 271 294 0.96 3 29 3.2e-05 0.0033 18.2 0.5 2 23 301 323 300 323 0.97 4 29 0.00016 0.016 16.0 0.8 1 21 343 363 343 364 0.95 5 29 0.094 9.7 7.3 0.5 3 23 464 484 462 484 0.94 6 29 0.00016 0.017 16.0 0.9 1 23 490 513 490 513 0.96 7 29 0.00014 0.014 16.2 0.1 1 23 585 608 585 608 0.96 8 29 0.0094 0.96 10.4 0.4 1 23 614 637 614 637 0.96 9 29 0.14 14 6.7 1.5 1 23 650 672 650 672 0.97 10 29 4.2e-05 0.0043 17.8 0.9 3 23 717 738 716 738 0.96 11 29 0.97 99 4.1 0.7 2 23 801 824 800 824 0.92 12 29 3.6 3.7e+02 2.3 0.0 2 23 833 855 833 855 0.84 13 29 0.15 16 6.6 0.1 2 23 862 884 861 884 0.93 14 29 1.5e-05 0.0016 19.2 1.2 1 23 892 914 892 914 0.98 15 29 0.65 67 4.6 0.7 1 23 946 970 946 970 0.92 16 29 0.00025 0.025 15.4 3.3 1 23 973 996 973 996 0.97 17 29 0.0041 0.43 11.6 0.8 2 23 1003 1025 1002 1025 0.95 18 29 0.07 7.2 7.7 9.5 1 23 1052 1075 1052 1075 0.94 19 29 0.0031 0.32 11.9 1.8 2 23 1087 1108 1086 1109 0.93 20 29 0.44 45 5.2 1.1 1 23 1112 1135 1112 1135 0.94 21 29 0.0092 0.95 10.5 2.8 2 23 1142 1165 1141 1165 0.94 22 29 4.3 4.4e+02 2.1 0.0 2 23 1202 1224 1201 1224 0.87 23 29 0.26 27 5.9 2.7 2 23 1233 1255 1233 1255 0.96 24 29 0.45 46 5.2 1.0 2 23 1261 1283 1260 1283 0.93 25 29 0.0029 0.3 12.0 0.5 1 21 1383 1403 1383 1404 0.96 26 29 0.37 38 5.4 1.9 2 23 1501 1523 1500 1523 0.94 27 29 0.37 39 5.4 0.3 2 23 1530 1552 1529 1552 0.94 28 29 0.35 36 5.5 1.8 1 23 1563 1585 1563 1585 0.97 29 29 0.0099 1 10.4 0.4 3 19 1594 1610 1593 1612 0.94
Sequence Information
- Coding Sequence
- ATGGAGCCCAGAGAGCATGGATACGACGAGCTTTGCAGGCTTTGTGCCTCGTACGATGCTGTCAAAATGGGATTATTCAGCCAGGAAGGCAAGAATCGTCAACTCGTTAACAAAATACAGACCTGTCTACCCTTCAAGATAGCAGAAGATGATCGACTGCCAAAGTGTCTTTGCTATCGGTGCATgtataatttggaaaatttttatgacttcAGAACAGCATGTGTAAATGCAGTTTCTGTTCTGGAAAACTTTCTGTCTCCGGATAAAAATgAAAATGATGACGACAGAAGGTATCCTACAGAATATTGTTCAGAATTACGTTCGGAACTCCTCAAAGAGAAAGAACATATGCCAATACTCATTCCTGAAGCCCCCGTAGTGAATCCGAACGCAGCATTGGGGACACCACCAAGACTTAATTCTGATGGCGAAGCAGATAATTACATTGAGGAAATTCTGGAACAAAGTGGCACGGATGAAGCTGCGGATGATGCTGAAGATAGAAAGTCAGAGGAGTATGAGTTGGATATGGAAACGAATCCCAGTGACTTTTTGGAAATGCCACCAATGCTCACAGAAGATGCAGAAGAAAATGAGACAGTGAATGTTTCCGCACGAGCACGTGCACGAGATTCTAGAGGATTTCAGCACAAATCTGAACAGCACGAAGTTTATGTCTGCTCACTTTGTAACAAGGCCTTCAGTTCAAAAGGCCATTTGTCCCTTCACGCGAGAATACACGTCGGTGCAGGTGATGTCATCGGTGAAAAGGTTATCACTGACGATCACACTTCTTACAAAAGACCCTATCAATGCGACCTCTGTTACAAGGCTTACTCGACGGCTAAACATCGATGGGGTCACGTATCAACTAGTCATCgagGTCATCCTGCGGTTACATGCAGTTACTGTTCACGCATTTACTCCACAAGAGGAAACCTAGAAGAACACATCCGTTCCAGGCACGCCGGTTTGCCACTTCCGCCGGAAGTGCCAGTTCCCTACGTTCAACCAGAAAACAAATACCAGTGCAAAACTTGTCCCAAGATGTATACGAACACAACAGATCTTAATAAACACAGTCGAATCTGCACAGGAGGTCAGCAAAAAGAATTCCCAAATAATGACCCAACCTTAGAgaagttaaagaaaattcaagttgAGGCTTCAGATATGTCGAGTAACGACTCGACCAATGAGACTAAAGATTACAAGAACGCTGAGGCTAAACTTGCAAAAAATCCCCAGCTCACAATTCTTAAACAGGCGCTCACCAAAGGAGACATTTTGAAGAGAAGCTACGACGAAAAATACAAGACTAGTTCCAAAACCAAAAAGCAAGTAAAAATCGATAGTAATGATATTGATGCAAACAAGCGGTGGTTCTGTGAATCCTGCCCACAGAACTTTACCTCATTCGACAGCTTCAAAGAACACGAACTTTTACACGAAACTGAAAAACCCTACTTCTGTTTATTATGCGAGAAAGATTTCACTCAAAAATCTTCCTTAAGTAATCATATTGTGACTATGCATGGCGTCGATCCACATCCTATCATCGACAGCGATAAGTGTTTAAAAAAGTCTGTTCTACTTCATGgatggaataaaaaattagagtcTACGAATGGAGAACCTAATCTCGTCATCAAAAAAGAGGAAGTTTCTTCACCTTATCCCGAAATATCTATAGAAAACGAAGAAGAACTGCCAAGTAACCAAGACAAGATTATCGAAATCGACACAGTCTTCGTTTGCGAAATCTGTACTCGAGATTTTAACGACAGAGCATCCTTGTGGCTTCATATCCGAGCCACCCATAAGGAATTCGCTGCCTTTGCTTGCGGAGTCTGTTTAAAAATCTGTTCGGATAACGCCCAGCTCCTCAACCATGTGAATATGTATCACGGAGGTTCCAAACTTCTTATGTCTGAGCAGAGGCGTTACAGCTGTACAATTTGCGGAAGACAGCACGATTCTCGAAAAAAGTTAATCACCCACGTTTCGATTCATAACGTGGATCCCAGTTACGATCCTGCGAGTTTCGTTCAACTCAACAGCAATTATTACAACGAGAATCTAAATAGCAACGAAGGCATCGAGCAGCCAGTTGATGGCGATGCCGAGGATGGAGAGAAAGTTGACTGTTACATCTGTTACAAATCATTTCCTAACGAAGATCATCTTATCAGGCATCAACGAAACGCTCACAAATCCGATCCAGCGGTAGTGATTGGAGAATCCACAGCGAATGGCAGTGGATCCGGGCCTAATGGAAATGGAAACAGAGCGCAATATCATTTATTCTACATCTGCGAACTTTGCGGCAATTCGCATCCCAGCAAATGGGAACGTTGGCTACACGTTTCTAGTATTCACGGAGACGATCCAGAAATCAAGTGTGAAAGGCCAGATTGTGCGAAGATTTTTGCGACAAAGACTCTCCGAAACGAACATGCTCAGCATCATTTAATGCAAGGTAGTTCGCCAAACACTTGTGAGATCTGCGGAAAATTGTGGGGAAGCCGAGTGGATTATTGGAAGCACGTGATGGGAGTCCACTCAGATACTGTTCCTTTAATCTGTGGAGTTTGTCTCAAAGTATTCCCTAATGTTCTTCAGTTAAGTGCTCACGTGAAGCAGAAACACTGGCCTTTAACAAATGGTGATTTTAGTTGTGATATTTGTGGCAGGCCTTATTCCAATAAGTCCAAAATGTCCAGGCACAGGAAGATTCATGGCCTCGATGGCGAGGGTCACGTGCTTCCAGATCCTAGTGAATACATCAACGATTCAGGGAGACTTGACAATGGAGAAACTATGGAGGTTGATTTCAGTTGTGAGGTGTGTGGAGATTTGAAGTTCCTGACCCTAGAAGACCTCTGCAATCATCGACGAATTATTCACAACCTCTTCCCCTGTGATTTGTGTAACAAATGTTACGGCAGAACTTCGCACTTGTGGAAACATGTTAATCGGGTTCACAAGGGTCACAAGGACGTCACCTGTCGGTTCTGCAAGAAAACGAGCGCTTCAAGAGATCACTTAGCAGCCCATATTGCTAAAATTCATAGATACAAGTCTGATATGAATAACGATACAAGAGAACCTGTGAATTTCGAGGTCGCACCTCCTGAAGAAGAGGCTCTTCACCATTGTGACAGATGCAAGAAGGACTTTTACAAACGGTATTTGCTTCGGCGTCACATGAAGGCATGTCATAAGTATCGAAAGGATCCTGGTGCTCTTTTGACTAGGTGTCGAGCTTGTGAAAGAATATTCAAGGATCGAGCGAGTCTTCAAAAACATATTGAGAATCATCACAGTAGTTACACTTGTCATTTGTGTAACGAAACGATAACTTCGAAGCTCGGAATCATGACTCATAATCGAATTAACCACATGGATCATCCAGATCTTACATGCGAGCTCAGCCATTGTAAGAAGCTTTTCCGCACAAAGGAGGATCTTGAATCTCATAAAAAGGATCATAGGATTCACACAACACCGAATGTTTGTGATTTCTGCGGAGACACTGCcgaaaataaacttaaattgaaaatgcatGTCTTGTCCTTGCATCGAAACGAAATCGGTGTTTCTTGTGGAGTTTGTCTTATTCCGATGAAAGACCcgaaggatttgaaaaaacatGTGGAGGACACTCACGGAAGTATCCTTTCAAAACCAAATACTTGTCAGGTTTGTGGAAAGCAGTATGCATCGAAGTGGAAAGCCTTTGATCATACAAAGAAGTGCCATGGAAAGGTTTTTAAGACCTGCAAACAATGCTTGGCTGTGTTTATTACCGAAGAAAGTATGAGGAATCATTATGAACACGTCCACAATGTTCCAAAAGACCAACTAGCTACATTCGAATATCGACTCGAAATCGGACGCAAGCGTCACTACGATAACTTGGAAGTCGTAATGAAAGAAGAGCCTGAAGaattggaatttgatgagGAACCGACAGAGGATTATTCGAATGATTATAAGAAAAGAATATCTGATTCTGATGACTATGATGCTCGAGCTGAATTTTATGCAAGGATGAACATCGAGCAGGAGGAACAGATGCCACCTTCGAAAAAGATAAAACTGGATTCGAAggctaaaaagaaattaaaagagcGACAAACCTATGAGTGCGAGAACTGCAAGGTACAATTTAATACCAAGACTCAATTTTGGAATCATATTAACCTTTGTCCGAAGCGAAATATGATTACTCAGGAGGAAGATATAAGTTTCCCAACCTCGATTCTTGAGGCGCatttgaagaataataatttgattaagAGAGAGGAACCTGAACAGGAACTTGACGAGAATAACTTAAACATTCCAGACTTCAATCTCTTTGAAGATATCAATATGCAGTTATCAGGTGAGAAACCAGTtcaaaatctttcttttaaatcgtCCTCGACTAGTAATAAATGTTCGAGGAAGGATTCACGGAAGGTTTACGATGAATCTACAAACACTGAGTGTACTTGCGAAGTTTGTGGGAAGCAATGGCCGGCGAAGAAACACCTGTGGCAGCATTTGATACGTTTTCATCGAGCAGAGGCTGCTGTAACGTGCGGGGTTTGCCTGAAACTTTGCACAACTTATGATGACTTGGCTTATCATCTGAAAGCTGCTCACGAAGCTTTGCTATCTTGTGAGGGAAACAACTTCACTTGTAAGGTTTGCGGAAGGTACCATAATGCCAGGAGCAAATTGTTGTTGCATATGAGCATTCATATCAACTGCAAGAATAATCCCATGTGCAAGAAGTGCAAACGCAGCTTTGAGACGgaggaaaaattgaaagagcACGTTGGAAATTGCGAGGGAAGACAATCGGGACTAGGAATCAGACATGATGCAGAAGATGTGAAGAATGATGACAACgatgaaaatgaagataatGACGAGAATGATGAGAAGGGAAGTTTTATTGGAGATGAGGGAGACGAGAGGGAAGATAAGGAAGGAAATTATGGATCGGGAGGAGAAAAGGGTTCTGATAATGAAGATAGCAGCTCGGATGATTCCGCAGATTCAGGAACGGATAGTTCCTCTACTTCGAGTGATGATGAAAATgagaatgaagaaaatgaagtaCCAGCTGAATCAAGAACTACAAGTAGACTCGGGGAACTAAGTTGCACGAGTGATAGTGATGAAGACTCCGACTCGGAAGCCCTTGAGGATGCTGCTGAGAGTAAATCTAATGTAAGGTGTGAAGATGATAGGGAAAATTTAGTGAACAAAGATGTAAAAATGGAAGGCATAGGAATTGAGTCTACTTTGGTGTTGTCCGAATCCGATACAAAAGATTCTACAGCATTTGGAGGATTTGAGAACAAGCTGATGAAAATTGAAACGAATAATATGGATTATTCGGATGATGAAGGTCCTCCAGTTTTGAGTCCAATGATGCCGTTGTTACCACCACAAGAGGAAGATATGAATAGTCAGATGGATGAGATGAGTCATAAATTGAGTCCGATGGTCAATTTGGAAACAAAGATGGAGCAGGAAATGCAGAATTGTGATTTTGAAGATATGCAGATCAAGTACGAGAATGTGGAAAATAAGAATCAAAGAGAGAGTAAAAATTTAGAGGAGTCTGAAGATTCAGAGTCTGAGAGTGaggatgaaaataaaatgtgtatCTATGAAGAAGCTGGGAATCGGGAGATTAAACCGGAAGGCTCAAGTGCGATCAGTGATGATGAAGATGCAGAAATTCAGGAAGAAATCAAGGAAGAGGAAACTGCAGAAGAGAAAGGAGCGGAAGTAGCTTCTGCAGAATCTGAAGAAGAAAGTGAAAACGAGGAAATagaagaggaagaggaagaagaatcCGAAGATGAAAGCGAGCAGGTCCAAATTGCAAACCACGGTAGTCCCGCAACAATCGATCACTCAGAAACGCTTTCACAAGATCTTGAAAGGGAAGCTTCAGATCAAGAAGAGGCTGAAGAAGGTGAAGAAGGTGAAGAGGAGGAAGATGAAGGAGTAGAAGAGGAACCAGAAGAGAATTTCATAAATGAAAACGCTGAAGTTGAAGAGGAACTAGCCGAGAATAATTCTCTTGTAGAGGAAGAAGTCATAGGAGAAGAAAACTACGAAGATGAAGCAATGATGGACGATGAAATGAACAACGAAGATCATTCCTTGCAGAATTTGAATAAGACTATCCTCACTGTCGGGAAGGATTCTGAGGGTAATCCCATCTTGATTCGCGAAGTAGTAACTGAATATCCATACCCGGACGAATACGATTGCGAATCTGAATATCCAAACGTTTCAAATGAACAAACTCCTCTTTTTAATGCCGACGAAAATCAAAGATTATCGGGAGAAAACTTTGGCTTAAATAGTGATAGCCTCGACCAAACCATGACTGAGCCAGAAGTACAGACGGTAGATGAATTAGATCATCACGAGCAGGTGGAGATCGATGAACAGGTCGAAGACAAAGCTGATAGTGATATCGAAGAGTCAAGAACGAGTGCCAAAAGTTAA
- Protein Sequence
- MEPREHGYDELCRLCASYDAVKMGLFSQEGKNRQLVNKIQTCLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVSVLENFLSPDKNENDDDRRYPTEYCSELRSELLKEKEHMPILIPEAPVVNPNAALGTPPRLNSDGEADNYIEEILEQSGTDEAADDAEDRKSEEYELDMETNPSDFLEMPPMLTEDAEENETVNVSARARARDSRGFQHKSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCYKAYSTAKHRWGHVSTSHRGHPAVTCSYCSRIYSTRGNLEEHIRSRHAGLPLPPEVPVPYVQPENKYQCKTCPKMYTNTTDLNKHSRICTGGQQKEFPNNDPTLEKLKKIQVEASDMSSNDSTNETKDYKNAEAKLAKNPQLTILKQALTKGDILKRSYDEKYKTSSKTKKQVKIDSNDIDANKRWFCESCPQNFTSFDSFKEHELLHETEKPYFCLLCEKDFTQKSSLSNHIVTMHGVDPHPIIDSDKCLKKSVLLHGWNKKLESTNGEPNLVIKKEEVSSPYPEISIENEEELPSNQDKIIEIDTVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYDPASFVQLNSNYYNENLNSNEGIEQPVDGDAEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSDPAVVIGESTANGSGSGPNGNGNRAQYHLFYICELCGNSHPSKWERWLHVSSIHGDDPEIKCERPDCAKIFATKTLRNEHAQHHLMQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSAHVKQKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEGHVLPDPSEYINDSGRLDNGETMEVDFSCEVCGDLKFLTLEDLCNHRRIIHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHKDVTCRFCKKTSASRDHLAAHIAKIHRYKSDMNNDTREPVNFEVAPPEEEALHHCDRCKKDFYKRYLLRRHMKACHKYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLGIMTHNRINHMDHPDLTCELSHCKKLFRTKEDLESHKKDHRIHTTPNVCDFCGDTAENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDTHGSILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFKTCKQCLAVFITEESMRNHYEHVHNVPKDQLATFEYRLEIGRKRHYDNLEVVMKEEPEELEFDEEPTEDYSNDYKKRISDSDDYDARAEFYARMNIEQEEQMPPSKKIKLDSKAKKKLKERQTYECENCKVQFNTKTQFWNHINLCPKRNMITQEEDISFPTSILEAHLKNNNLIKREEPEQELDENNLNIPDFNLFEDINMQLSGEKPVQNLSFKSSSTSNKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTTYDDLAYHLKAAHEALLSCEGNNFTCKVCGRYHNARSKLLLHMSIHINCKNNPMCKKCKRSFETEEKLKEHVGNCEGRQSGLGIRHDAEDVKNDDNDENEDNDENDEKGSFIGDEGDEREDKEGNYGSGGEKGSDNEDSSSDDSADSGTDSSSTSSDDENENEENEVPAESRTTSRLGELSCTSDSDEDSDSEALEDAAESKSNVRCEDDRENLVNKDVKMEGIGIESTLVLSESDTKDSTAFGGFENKLMKIETNNMDYSDDEGPPVLSPMMPLLPPQEEDMNSQMDEMSHKLSPMVNLETKMEQEMQNCDFEDMQIKYENVENKNQRESKNLEESEDSESESEDENKMCIYEEAGNREIKPEGSSAISDDEDAEIQEEIKEEETAEEKGAEVASAESEEESENEEIEEEEEEESEDESEQVQIANHGSPATIDHSETLSQDLEREASDQEEAEEGEEGEEEEDEGVEEEPEENFINENAEVEEELAENNSLVEEEVIGEENYEDEAMMDDEMNNEDHSLQNLNKTILTVGKDSEGNPILIREVVTEYPYPDEYDCESEYPNVSNEQTPLFNADENQRLSGENFGLNSDSLDQTMTEPEVQTVDELDHHEQVEIDEQVEDKADSDIEESRTSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394568;
- 90% Identity
- iTF_01394568;
- 80% Identity
- -