Basic Information

Gene Symbol
-
Assembly
GCA_904066015.1
Location
CAJFCO010000048.1:2496687-2503507[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 7e-06 0.00097 20.2 1.0 1 23 201 223 201 223 0.98
2 29 0.029 4 8.9 1.4 1 23 246 269 246 269 0.96
3 29 3e-05 0.0042 18.2 0.5 2 23 276 298 275 298 0.97
4 29 0.00015 0.021 16.0 0.8 1 21 318 338 318 339 0.95
5 29 0.065 9 7.8 0.6 3 23 439 459 437 459 0.94
6 29 0.00034 0.047 15.0 0.5 1 23 465 488 465 488 0.96
7 29 0.00013 0.018 16.2 0.1 1 23 560 583 560 583 0.96
8 29 0.009 1.2 10.5 0.4 1 23 589 612 589 612 0.96
9 29 0.14 19 6.8 1.5 1 23 625 647 625 647 0.97
10 29 4e-05 0.0055 17.9 0.9 3 23 692 713 691 713 0.96
11 29 0.93 1.3e+02 4.1 0.7 2 23 776 799 775 799 0.92
12 29 3.5 4.8e+02 2.3 0.0 2 23 808 830 808 830 0.84
13 29 0.22 30 6.1 0.1 2 23 837 859 836 859 0.93
14 29 1.5e-05 0.002 19.2 1.2 1 23 867 889 867 889 0.98
15 29 0.76 1.1e+02 4.4 0.9 1 23 921 945 921 945 0.92
16 29 0.00024 0.033 15.4 3.3 1 23 948 971 948 971 0.97
17 29 0.004 0.55 11.6 0.8 2 23 978 1000 977 1000 0.95
18 29 0.067 9.3 7.7 9.5 1 23 1027 1050 1027 1050 0.94
19 29 0.003 0.42 12.0 1.8 2 23 1062 1083 1061 1084 0.93
20 29 0.42 59 5.2 1.1 1 23 1087 1110 1087 1110 0.94
21 29 0.0089 1.2 10.5 2.8 2 23 1117 1140 1116 1140 0.94
22 29 4.1 5.7e+02 2.1 0.0 2 23 1177 1199 1176 1199 0.87
23 29 0.25 35 5.9 2.7 2 23 1208 1230 1208 1230 0.96
24 29 0.43 60 5.2 1.0 2 23 1236 1258 1235 1258 0.93
25 29 0.0028 0.39 12.0 0.5 1 21 1358 1378 1358 1379 0.96
26 29 0.36 50 5.4 1.9 2 23 1476 1498 1475 1498 0.94
27 29 0.36 50 5.4 0.3 2 23 1505 1527 1504 1527 0.94
28 29 0.34 47 5.5 1.8 1 23 1538 1560 1538 1560 0.97
29 29 0.004 0.55 11.6 0.4 3 20 1569 1586 1568 1588 0.95

Sequence Information

Coding Sequence
ATGGTCTGTCTTTTCTTTAGCTTTGAAGATATTAAAAATACGATTTTTTTACTTGTGTTCCAGATAGCAGAAGATGATCGACTGCCAAAGTGTCTTTGCTATCGATGCATGTATAATTTGGAAAATTTTTATGACTTCAGAACAGCATGTGTAAATGCAGTTTCTGTTCTGGAAAACTTTCTGTCTCCAGATAAAAATGAAAATGATGACGACAGAAGGAATCCTGCAGAACATTGTTCAGAATTACGTTCGGAACTCCTCAAAGAGAAAGAACATATGCCAATACTCATTCCTGAAGCCCCCGTAGTGAATCCGAACGCAGCATTGGGAACACCACCAAGACTTAATTGTGATGGCGAAGCAGATAATTATATTGAGGAAATTCTGGAACAAAGTGGCACAGATGAAGCTGTGGATGATGTTGAAGATAAAAAGTCAGAGGAGTACGAGTTGGATATGGAAACGAATCCCAGTGACTTTTTGGAAATGCCACCAATGCTCACAGAAGATGCAGAAGAAAATGAGACAGCGAACGTTTCCGCACGAGCACGTGTACGAGATTCTAGAGGATTTCAGCACAAATCTGAACAGCACGAAGTTTATGTCTGCTCACTTTGTAACAAGGCCTTCAGTTCAAAAGGCCATTTGTCCCTTCACGCGAGAATACACGTCGGTGCAGGTGATGTCATCGGTGAAAAGGTTATCACTGACGATCACACTTCTTACAAAAGACCCTATCAATGCGACCTCTGCTACAAGGCTTACTCGACGGCTAAACATCGATGGGGTCACGTATCAACTAGTCATCGAGGTCATCCTGCGGTGACATGCAGCTATTGTTCACGCATTTATTCCACAAGAGGAAACCTAGAAGAACACATCCGTTCCAGGCACGCCGGTTTGCCACTTCCGCCGGAACTGCCAGTTCCCTACGTTCAACCAGAAAACAAATACCAGTGCAAGACTTGTCCCAAGATGTATACGAATACAACAGACCTCAATAAACACAGTCGAATCTGCACAGGAGGCCAGCAAAAAGAATTGCCAAATAATGACCCGACCTTAGAGAAGTTAAAGAAAATTCAAGTTGAGGCTTCAGATATGTCGAGTAACGACTCGACCAATGAAACTAAAGATTACAAGAACGCTGAGGCTAAACTTGCAAAAAATCCTCAGCTCACAATTCTTAAACAGGCGCTCACCAAAGGAGACATTTTGAAGAGAAGCTACGACGAAAAATATAAGACTAGTTCCAAAACCAAAAAGCAGGCAAAAATCGATAGTAATGATATTGATGTAAACAAGCGGTGGTTCTGTGAATCCTGCCCCCAGAACTTCACCACGTTCGACAGCTTCAAAGAACACGAACTTTTACACGAAGCTGAAAAACCCTACTTTTGTTTATTATGCGAAAAAGATTTCGCTCAAAAATCTTCCTTAAGTAATCATATTGTGACTATGCATGGTGTTGATCCCCATCCTATTATCGACAGCGATAAGTGTTTAAAAAAGTCTGTTCTATCTCATGGATGGAATAAAACATCAGAGTCTACGAACGGAGAACCTAATCTGGTCATCAAAAAAGAGGACGCTTCTTCACCTTATCCCGAAATATCTATAGAAAACGAAGAAGAACTGCCAAGTAGTCAAGACAAGATTATCGAAATCGACACAGTCTTCGTTTGTGAAATCTGTACTCGAGATTTTAACGACAGAGCATCCTTGTGGCTTCATATCCGAGCCACCCATAAGGAATTCGCCGCCTTTGCTTGCGGAGTCTGTTTAAAAATCTGTTCTGATAACGCGCAGCTACTCAACCATGTGAATATGTATCATGGAGGTTCCAAACTTCTCATGTCTGAGCAAAGGCGTTATAGCTGTACAATTTGCGGAAGACAGCACGATTCTCGAAAAAAGTTAATCACCCACGTTTCGATTCACAACGTGGATCCCAGTTACGATCCTGCGAGTTTCGTTCAACTCAACAGCAATTATTACAACGAGAATCTAAATAGCAACGAAGGCATCGAGCAACCAGTTGATGGCGATGTCGAGGATGGAGAGAAAGTTGACTGCTACATCTGTTACAAATCATTTCCCAACGAAGATCATCTTATCAGGCATCAACGAAACGCTCACAAATCCGATCCAGCGGTAGTGATTGGAGAATCCACAGCGAATGGCAGTGGATCCGGGCCTAATGGAAATGGAAACAGAGCGCAGTATCATTTATTCTACATCTGCGAACTTTGCGGCAATTCGCATCCCAGCAAATGGGAACGTTGGCTACACGTTTCGAGTATTCACGGAGATGATCCAGAAATCAAGTGTGAGAGGCCAGATTGTGCAAAGATTTTTGCGACAAAGACTCTTCGAAACGAACACGCTCAGCATCATTTAATGCAAGGTAGTTCGCCAAACACTTGTGAGATCTGCGGGAAATTGTGGGGAAGCCGAGTGGATTATTGGAAGCACGTGATGGGAGTCCACTCAGATACTGTTCCTCTAATCTGTGGAGTTTGCCTCAAAGTATTCCCTAATGTTCTTCAGTTAAGTTCTCACGTGAAGCAGAAACACTGGCCTTTAACAAATGGTGATTTTAGTTGTGATATTTGTGGCAGGCCTTATTCCAACAAATCCAAAATGTCCAGGCACAGGAAGATTCATGGCCTCGATGGCGAAGGTCATGTGCTTCCAGATCCTAGTGAATACATCAACGATTCAGGGAGACTTGACAATGGAGAAGCTATGGAGGTTGATTTCAGTTGTGAAATGTGTGGAGATTTGAAGTTCCTGACCCTAGAAGACCTCTGCAATCATCGAAGAATTATTCACAACCTCTTCCCCTGTGATTTGTGTAACAAATGTTACGGCAGAACTTCGCACTTGTGGAAACATGTTAATCGGGTTCACAAGGGTCACAAGGACGTCACCTGTCGGTTCTGCAAGAAGACGAGCGCTTCAAGAGATCACTTAGCAGCCCATATTGCTAAAATTCATAGATGCAAGTCTGATGTGAAAAACGATTCAAGAGAACCTGTGAATTTCAGGGTTGCAGCTCCTGAAGACGAGGCTCTTCACCATTGTGACAGATGCAAGAAGGACTTTTACAAACGGTATTTGCTTCGACGTCACATGAAGGCATGTCATAAGTATCGAAAGGATCCTGGCGCTCTTTTGACTAGGTGTCGAGCTTGTGAAAGAATATTCAAGGATCGAGCGAGTCTTCAAAAACATATTGAGAATCATCACAGTAGTTATACTTGTCATTTATGTAACGAAACGATAACTTCGAAGCTGGGGATCATGACTCATAATCGGATTAACCACATGGATCATCCAGATCTTACATGCGAGCTCAGCCATTGTAAGAAGCTTTTCCGCACAAAGGAGGATCTTGAATCTCATAAAAAGGATCACAGGATTCACACAACACCGAATGTTTGTGATTTCTGTGGAGACACTGCCGAAAATAAACTTAAATTGAAGATGCATGTCTTGTCCTTGCATCGAAACGAAATCGGTGTTTCTTGTGGAGTCTGTCTTATTCCGATGAAAGACCCTAAGGATTTGAAAAAACATGTGGAGGACACTCACGGAAGTATACTTTCAAAGCCAAATACTTGTCAGGTTTGTGGAAAGCAGTATGCATCGAAGTGGAAAGCCTTTGATCATACGAAGAAGTGTCATGGAAAAGTTTTTAAAACCTGCAAACAATGCCTGGCTGTGTTTATTACCGAAGAAAGTATGAGGAATCATTATGAACACGTCCACAATGTTCCAAAAGACCAACTAGCTACATTCGAATACCGCCTCGAAATCGGACGCAAGCGTCACTACGATAACTTGGAAGTCGTAATGAAAGAAGAGCCTGAGGAATTGGAATTTGATGAGGAACCGACAGAGGATTATTCGAATGACTACAAGAAAAGAATATCTGATTCTGATGACTATGATGCTCGAGCTGATTTCTATGCAAGGATGAACATCGAGCAGGAGGAACAGATGCAACCTTTGAAAAAGGTAAAGCTGGACTCAAAGGCTAAAAAGAAATTAAAAGAGCGACAAACCTACGAGTGCGAGAACTGCAAGGTACAGTTTAATACCAAGACTCAATTTTGGAATCATATTAACCTTTGTCCGAAGCGAAATATGACTACCAAGGAGGAAGATATAAGTTTCCCAACCTCGATTCTTGAGGCGCATTTGAAGAATAATAATTTAATTAAGAGAGAGGAACCTGAACAGGAACTTGACGAGAATAATTTAAACATTCCAGACTTCAATCTCTTTGAAGATATCAATATGCAGTTATCAGGTCAGAAACCAGTTCAAAATCTTTCACTTAAATCTTCCTCGAGTAATAATAAATGTTCGAGGAAGGATTCACGGAAAGTTTACGATGAATCTACAAACACCGAGTGTACTTGCGAAGTTTGTGGAAAGCAATGGCCGGCGAAGAAGCACCTGTGGCAGCATTTGATTCGTTTTCATCGAACAGAGGCTGCTGTAACATGCGGGGTTTGCCTGAAACTTTGCACAACTTATGATGACTTGGCTTATCATCTGAAAGCTGCTCACGAGGCTTTGCTATCTTGTGAGGGAAATAACTTCACTTGTAAGGTTTGCGGAAGGTACCACAATGCCAGGAGCAAATTGTTGTTGCATATGAGTATTCATATCAACTGCAAGAATAATCCGATGTGCAAAAAGTGCAAACGCAGTTTTGAGACGGAGGAAAAATTGAAAGAACACATTGGGAATTGCGAGGGAAGACAGTCGGGACTGGGAATCAGACATGATGCAGAAGATGTGAAGAATGAAGACAACGATGAAAATGAAGATAATGACGAGAATGATGAGAAGGGAAGTTTTATTGGAGATGAGGGAGACGAGAGGGAAGATAAGGAAGGAAATTATGGATCGGGAGAAGAAAAGGGCTCTGATAATGAAGATAGCAGCTCCGATGATTCTGCAGATTCAGGAACGGATAGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTAGCAGCTGAATCAAGAACTACAAGTAGGCTCGGGGAACTAAGTTGCACGAGTGATAGTGATGAAGACTCAGACTCGGAAGCCCTTGAAGATGCTGCTGAGATTAAATCTAATGTAAGGTCTGAAGATGGTAGAGAAAATTTAGTGAATAAAGATGTAAAAATGGAAGGCATAGGAATTGAGTCCACTTTGGTATTGTCCGAATCCGATACGAAAGATTCTACAGCATTTGGAGGGTTGGAGAACAAACTGATGAAGATTGAAACGAATAATATGGATTATTCGGATGATGAAGGTCCTCCGGTTTTGAGTCCAATGATGCCATTGTTACCACCACAAGAGGAAGATTTGAATAGTCAGGTGGATGAGATGAGTCATAAATTGAGTCCGATGGTCACTTTGGAAACAAAGATGGAGCAGGAAATGCAGGATTGTAATTTTGAAGATAAGCAGATCAACTACCAGAATATTGAAAATAAGAATAAAACGAAGAGTAAAAATTTAGAGGAGTCTGAAGATTCAGAGTCTGAGAGTGAGAATGAAAATAAAATGTGTATCTATGAAGAAGCTGGGAATCGAGAGATTAAACCAGAAGGCTTAAGTGCGATCAGTGACGATGAAGAAGATGCAGAAATGCAGGAAGAAACCAAGGAAGAAGAAACAGCGGAAGAGAAAGGAGCGGAAGTAGCTTCTGCAGAATCTGAAGAAGAAAGTGAAAACGAGAAAATGGAAGAGGAAGAGGAAGAAGAATCCGAAGATGAAAGCGAGCAGGTCCAAATTGCAAACCACAGTAGTCCCGCCACAATCGATCACTCAGAAACACTTTCACAAGATCTTGAAGGGGAAGTTTCAGATCAAGAAGAGGCTGAAGAAGGTGGAGAGGAGGAAGAGGAAGAAGTTGAAGAAGGGGAACCAGAAGAGAACTTCATAAATGCAAACGCTTTAATTGAAGAGGAACTAGCCGAGAATAATTCTCTTGTAGAGGAAGAAGTCGTAGGAGAAGAAAACTACGAAGATGAAGACGAAATGAACAACGAAGATCATTCCTTGCAGAATTTAAATAAGACTATCCTCACTGTCGGAAAGGATTCTGAAGGTAATCCCATCTTGATTCGCGAAGTAGTAACTGAATATCCTTACCAGGACGAATACGATTGCGAATCTGAATATCCAAACGTTTCACATGAACAAACTCCTCTTTTTAATGCCGACGAAAATCAAAGATTATCGAGAGAAACCTTTGGCTTAAATAGTGATAGCCTCGACCAAACCATGACTGAGCCTGAAGTACAGACGGTAGATGAATTAGATCATCACGAGGATGTGGAGACCGATGAACAGGTCGAAGACAAAGCTGATAGTGATATCGAAGAGTCAAGAACGAGTGCCAAAAGTTAA
Protein Sequence
MVCLFFSFEDIKNTIFLLVFQIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVSVLENFLSPDKNENDDDRRNPAEHCSELRSELLKEKEHMPILIPEAPVVNPNAALGTPPRLNCDGEADNYIEEILEQSGTDEAVDDVEDKKSEEYELDMETNPSDFLEMPPMLTEDAEENETANVSARARVRDSRGFQHKSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCYKAYSTAKHRWGHVSTSHRGHPAVTCSYCSRIYSTRGNLEEHIRSRHAGLPLPPELPVPYVQPENKYQCKTCPKMYTNTTDLNKHSRICTGGQQKELPNNDPTLEKLKKIQVEASDMSSNDSTNETKDYKNAEAKLAKNPQLTILKQALTKGDILKRSYDEKYKTSSKTKKQAKIDSNDIDVNKRWFCESCPQNFTTFDSFKEHELLHEAEKPYFCLLCEKDFAQKSSLSNHIVTMHGVDPHPIIDSDKCLKKSVLSHGWNKTSESTNGEPNLVIKKEDASSPYPEISIENEEELPSSQDKIIEIDTVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYDPASFVQLNSNYYNENLNSNEGIEQPVDGDVEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSDPAVVIGESTANGSGSGPNGNGNRAQYHLFYICELCGNSHPSKWERWLHVSSIHGDDPEIKCERPDCAKIFATKTLRNEHAQHHLMQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSSHVKQKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEGHVLPDPSEYINDSGRLDNGEAMEVDFSCEMCGDLKFLTLEDLCNHRRIIHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHKDVTCRFCKKTSASRDHLAAHIAKIHRCKSDVKNDSREPVNFRVAAPEDEALHHCDRCKKDFYKRYLLRRHMKACHKYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLGIMTHNRINHMDHPDLTCELSHCKKLFRTKEDLESHKKDHRIHTTPNVCDFCGDTAENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDTHGSILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFKTCKQCLAVFITEESMRNHYEHVHNVPKDQLATFEYRLEIGRKRHYDNLEVVMKEEPEELEFDEEPTEDYSNDYKKRISDSDDYDARADFYARMNIEQEEQMQPLKKVKLDSKAKKKLKERQTYECENCKVQFNTKTQFWNHINLCPKRNMTTKEEDISFPTSILEAHLKNNNLIKREEPEQELDENNLNIPDFNLFEDINMQLSGQKPVQNLSLKSSSSNNKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRTEAAVTCGVCLKLCTTYDDLAYHLKAAHEALLSCEGNNFTCKVCGRYHNARSKLLLHMSIHINCKNNPMCKKCKRSFETEEKLKEHIGNCEGRQSGLGIRHDAEDVKNEDNDENEDNDENDEKGSFIGDEGDEREDKEGNYGSGEEKGSDNEDSSSDDSADSGTDSSXXXXXXXXXXXXXXVAAESRTTSRLGELSCTSDSDEDSDSEALEDAAEIKSNVRSEDGRENLVNKDVKMEGIGIESTLVLSESDTKDSTAFGGLENKLMKIETNNMDYSDDEGPPVLSPMMPLLPPQEEDLNSQVDEMSHKLSPMVTLETKMEQEMQDCNFEDKQINYQNIENKNKTKSKNLEESEDSESESENENKMCIYEEAGNREIKPEGLSAISDDEEDAEMQEETKEEETAEEKGAEVASAESEEESENEKMEEEEEEESEDESEQVQIANHSSPATIDHSETLSQDLEGEVSDQEEAEEGGEEEEEEVEEGEPEENFINANALIEEELAENNSLVEEEVVGEENYEDEDEMNNEDHSLQNLNKTILTVGKDSEGNPILIREVVTEYPYQDEYDCESEYPNVSHEQTPLFNADENQRLSRETFGLNSDSLDQTMTEPEVQTVDELDHHEDVETDEQVEDKADSDIEESRTSAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01394568;
90% Identity
iTF_01394568;
80% Identity
-