Scon005376.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- -
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000017.1:3095467-3108436[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 7.1e-06 0.00088 20.2 1.0 1 23 230 252 230 252 0.98 2 29 0.029 3.6 8.8 1.4 1 23 275 298 275 298 0.96 3 29 3.1e-05 0.0038 18.2 0.5 2 23 305 327 304 327 0.97 4 29 0.00015 0.019 16.0 0.8 1 21 347 367 347 368 0.95 5 29 0.091 11 7.3 0.5 3 23 468 488 466 488 0.94 6 29 0.00034 0.042 14.9 0.5 1 23 494 517 494 517 0.96 7 29 0.00013 0.017 16.2 0.1 1 23 590 613 590 613 0.96 8 29 0.0091 1.1 10.4 0.4 1 23 619 642 619 642 0.96 9 29 0.14 17 6.7 1.5 1 23 655 677 655 677 0.97 10 29 4e-05 0.005 17.8 0.9 3 23 722 743 721 743 0.96 11 29 0.94 1.2e+02 4.1 0.7 2 23 806 829 805 829 0.92 12 29 3.5 4.4e+02 2.3 0.0 2 23 838 860 838 860 0.84 13 29 0.15 19 6.6 0.1 2 23 867 889 866 889 0.93 14 29 1.5e-05 0.0018 19.2 1.2 1 23 897 919 897 919 0.98 15 29 1.4 1.8e+02 3.5 1.3 1 23 951 975 951 975 0.92 16 29 0.00024 0.03 15.4 3.3 1 23 978 1001 978 1001 0.97 17 29 0.004 0.5 11.5 0.8 2 23 1008 1030 1007 1030 0.95 18 29 0.068 8.5 7.7 9.5 1 23 1057 1080 1057 1080 0.94 19 29 0.003 0.38 11.9 1.8 2 23 1092 1113 1091 1114 0.93 20 29 0.43 53 5.2 1.1 1 23 1117 1140 1117 1140 0.94 21 29 0.009 1.1 10.4 2.8 2 23 1147 1170 1146 1170 0.93 22 29 4.2 5.2e+02 2.1 0.0 2 23 1207 1229 1206 1229 0.87 23 29 0.26 32 5.9 2.7 2 23 1238 1260 1238 1260 0.96 24 29 0.23 29 6.0 0.3 2 23 1266 1288 1265 1288 0.93 25 29 0.0029 0.36 12.0 0.5 1 21 1388 1408 1388 1409 0.96 26 29 0.36 45 5.4 1.9 2 23 1506 1528 1505 1528 0.94 27 29 0.36 45 5.4 0.3 2 23 1535 1557 1534 1557 0.94 28 29 0.34 43 5.5 1.8 1 23 1568 1590 1568 1590 0.97 29 29 0.004 0.5 11.5 0.4 3 20 1599 1616 1598 1618 0.95
Sequence Information
- Coding Sequence
- ATGGAGCCCAGAGAGCATGGATACGACGAGCTTTGCAGGCTTTGTGCCTCGTACGATGCTGTCAAAATGGGATTATTCAGCCAGGAAGGCAAGAATCGTCAACTCGTTGATAAAATACAGGCCTGTCTACCCTTCAAGGTAGCAGAGGATGATCGACTGCCAAAGTGTCTTTGCTTACGATGCAtgtttaatttggaaaatttctacGATTTCAGAACAGCATGTGTAAATGCAGTTTCTCTTTTGGAAACCTTTCTGTCTGCAGATAACAGTAAAAATGATGGTGACAGGAGGAGTCTTACAGAACATTGTTCGGCATTACGTTCGGAATTACGTTCGGAACTCCTCAAAGAGAAAGAACATATGCCAATACTCATTCCTGAAGCCCCCGTAGTGAATCCGAACGCAGCATTGGGGACACCACCAAGACTTAATTCTGATGGCGAAGCAGATAATGACGTCGAGGAAGTTCTAGAACAAAGTGGCACGGATGAAgcTGCCGATGATGCTGAAGACAGAAAGTCAGAGGAGTACGAATTGGATATGGAAACGAATCCCAGTGACTTTTTGGAAATGCCACCAATGCTCACAGAAGATGTAGAAGAAAATGAGACAGCGATCGTTTCTCCACGAGCACGTGTACGAGATTCTAGAGGATTTCAGCACAAATCTGAACAGCACGAAGTTTATGTCTGTTCACTTTGTAACAAGGCCTTCAGTTCAAAAGGCCATTTGTCCCTTCACGCGAGAATACACGTCGGTGCAGGTGATGTCATCGGTGAAAAGGTTATCACTGACGATCACACTTCTTACAAAAGACCCTATCAATGCGACCTCTGCTACAAGGCTTACTCGACGGCTAAACATCGATGGGGTCACGTATCAACTAGTCATCGagGTCATCCTGCGGTGACATGTAGCTACTGTTCACGCATTTACTCCACAAGAGGAAACCTAGAAGAACACATACGTTCCAGGCATGCCGGACTGCCACTTCCGCCGGAACTGCCAGTTCCCTACGTTCAACCAGAAAACAAATACCAGTGTAAGACTTGTCCCAAGATGTATACGAACACAACAGATCTTAATAAACACAGTCGAATCTGCATAGGAAGTCAGCAAAAGGAATTGCCAAATAATGACCCAACTATAGAgaagttaaagaaaattcaagttgAGACTTCAGATATGTCGAGTAACGATTCGACCAACGAGACTAAAGATTACAAGAACGCTGAGGCTAAACTTGCAAAAAATCCTCAGCTCACAATTCTAAAACAGGCGCTCACCAAAGGAGATATCTTGAAGAGAAGTTACGATGAAAAATACAAGAATAGTTCTAAAACCAAAAAGCAAGCAAAAACCGATAGTAATGATATTGATGTAAACAAGCTATGGTTCTGTGAATCCTGCCCCCAGAACTTCACCTCGTTCGACAGCTTCAAAGAACACGAACTTTTACATGATGCTAAAAAACCCTACTTTTGTTTATTATGTGAGAAAGATTTCGCCCAAAAATCCTCTTTAAGTAATCATATTGTGACTATGCATGGTGTTGATCCCCATCCTATCATTGACAGCGatagatgtttaaaaaagtcTCTTCTATCCCATGgatggaataaaaaatcagaGCCTACGAACGGAGAACCCAATTTCAATCTCATCAAAAAAGAGGAAGATTCTTCGCCTTATCCCGCAATATCTATAGAAAACGAAGAAGAACTGCCAAGTAACCAAGACAAGATTATCGAAATCGACACAGTCTTCGTTTGCGAAATCTGTACTCGAGATTTTAATGACAGAGCATCCTTATGGCTTCATATCCGAGCCACCCATAAGGAATTCGCCGCCTTTGCTTGCGGAGtctgtttaaaaatctgttctgACAACGCTCAGCTACTCAACCATGTGAATATGTATCATGGAGGTTCCAAACTTCTCATGTCTGAGCAGAGACGTTACAGCTGTACAATTTGCGGAAGACAGCACGATTCtcgaaaaaagttaattaccCACGTTTCGATTCACAACGTGGATCCCAGTTACGATCCTGCGAGTTTCGTTCAACTCAACAGCAATTATTACAACGAGAATCTAAATAGCAACGAAGGCATCGAGCAACCAATTGATGGCGATGTTGAGGATGGAGAGAAAGTTGACTGCTATATCTGTTACAAATCATTCCCTAACGAAGATCATCTTATCAGGCATCAACGAAACGCTCACAAATCCGATCCAGCGGTAGTGATTGGAGAGTCTACAGCGAATGGCAGTGGAACCGGGCCTAATGGAAATGGAAACAGAGCGCAGTATCATTTATTCTACATCTGCGAGCTTTGCGGCAATTCGCATCCCAGCAAATGGGAACGTTGGTTACATGTTTCTAGTATTCACGGAGACGATCCTGAGATCAAGTGTGAGAGGCCAGATTGCGCGAAGATATTCGCGACAAAGACTCTTCGAAACGAACACGCCCAGCATCATGCAATGCAAGGTAGTTCGCCAAACACTTGTGAGATCTGCGGAAAATTGTGGGGAAGCCGAGTGGATTATTGGAAGCACGTGATGGGAGTCCACTCAGACACTGTTCCTCTAATCTGTGGAGTTTGCCTCAAAGTATTCCCTAATGTTCTTCAGTTAAGTGCTCACGTGAAGCAGAAACACTGGCCTTTAACAAACGGTGATTTTAGTTGTGATATTTGTGGCAGGCCTTATTCCAACAAGTCCAAAATGTCCAGACACAGGAAGATTCATGGCCTTGATGGCGAGGGTCACGTGCTTCCAGATCCTAGTGAATACATTAACGATTCAGGGAGACTTGACAACGGAGAAGCCATGGAGGTTGATTTCAGTTGTGAAATGTGTGGAGATTTGAAGTTCCTGAGCCTGGAAGACCTCTGCAATCATCGAAGAATTACACACAACCTCTTCCCCTGCGATTTGTGTAACAAATGTTACGGCAGAACTTCGCACTTGTGGAAACATGTTAATCGGGTTCACAAGGGTCACAAGGACGTCACCTGTCGATTCTGCAAGAAGACAAGCGCCTCAAGAGATCACTTAGCAGCTCATATTGCTAAGATTCACAGATACAAGTCCGATGTGAAAAACGATACAAGAGAACCAGTAAATTTCAGGGTCGCAGCTCCAGAAGAAGAGGTTCTTCATCATTGTGACAGATGCAAGAAGGACTTTTACAAACGGTACTTGCTTCGGCGTCACATGAAAGCATGTCATAAGTATCGAAAGGATCCTGGAGCTCTTTTGACTAGGTGTCGAGCTTGTGAAAGAATATTCAAGGATCGAGCGAGTCTTCAAAAACACATTGAAAATCATCACAGTAGTTACACTTGTCATCTGTGTAACGAAACGATAACTTCGAAGCTGGGGATTATGACTCATAATCGGATTAACCACATGGATCATCCAGATCTTACATGTGAGCTCAATCATTGCAAGAAGCTTTTCCGCACAAAAGAGGATCTTGAATCTCATAAAAAGGATCACAGGATTCACGCAACACCGAATGTTTGTGATTTCTGTGGAGACACTGCcgaaaataaacttaaattaaagatgCATGTCTTATCCTTGCATCGAAACGAAATCGGTGTTTCTTGTGGAGTTTGTCTTATTCCAATGAAAGATCcgaaggatttgaaaaaacatgTGGAGGACACTCACAGAAGTATTCTTTTAAAGCCAAATACTTGTCAGGTTTGTGGAAAGCAGTATGCATCGAAGTGGAAAGCCTTTGATCATACGAAGAAGTGCCATGGAAAGGTTTTTAAGACCTGCAAACAATGCCTGGCTGTGTTTATTACTGAAGAAAGTATGAGGAATCATTATGAATACGTCCACAATGTTCCAAAAGATCAACTGGCTACTTTTGAATACCGCCTCGAAATCGGACGCAAGCGTCACTATGATAACTTAGAAGTCGTGATGAAAGAAGAGCCTGAAGAATTGGAATTCGATGAAGAACCGGCCGAGGATTATTCGAATGATTATAAGAAAGGAATATATGATTCTGATGACTATGATGCTCGAGCTGATTTCTATTCAAGGATGAACAATGAGCAGGAGGAACAGATGCGGCCTTTGAAAAAGATGAAACTGGACTCAAAGgctaaaaagaaagtaaaagagCGACAAACCTACGAGTGCGAGAACTGCAAGGTACAGTTTAATACCAAGACTCAATTTTGGAATCATATTAATCTTTGCCCGAAGCGGAATATGATTACCAAGGAGGAAGTTACAAGTTTCCCAACGTCGATTCTCGAGGCACATTTGAAGAATAATAACCTGATTAAGAGAGAGGAACCTGAACAGGAACTTGACGAAAATAACTTAAACATTCCAGACTTCAATCTCTTTGAAGACATCAATATGCAGTTGTCAGGTCAGAAACCAGTTCAAAATCTTTCGCTTAAATCTTCCTCGGGTAGCAATAAATGTTCGAGGAAGGATTCACGAAAAGTTTACGATGAATCTACAAACACCGAGTGTACCTGCGAAGTTTGTGGGAAGCAGTGGCCGGCGAAGAAGCACCTGTGGCAGCATTTGATTCGCTTTCATCGAGCAGAGGCCGCTGTAACATGCGGGGTTTGCCTGAAACTTTGCACAACTTATGATGACTTGGCTTATCATCTGAAAGCTGCTCACGAGGCTTTGCTGTCTTGTGAGGGAAATAACTTTACTTGTAAAGTTTGCGGAAGGTACCACAATGCCAGGAGCAAATTGTTGTTGCATATGAGCATCCATATCAATTGCAAGAATAATCCGATGTGCAAGAAGTGTAAACGCAGCTTCGAGACGGAGGAAAAATTGAAGGAGCACATTGGGAATTGCGAGGGAAGACAGTCGGGATTGGGAATCAGACATGATGCAGAGGATGTGAAGAATGAAGACAACgatgaaaatgaagataatgatgataatgacGAAAAGGGAAGTTTTATCGGAGATGAGGGAGACGAAAGGGAAGAGAAGGAAGGTAATTATGGATCGGGAGAAGAAAAGGGTTCTGATAATGAAGACAGCAGCTCGGATGATTCTGCAGATTCAGGAACGGATAGTTCCTCTACCTCGAGTGATGATGAAAACgagaatgaagaaaatgaagtaGCAGCTGaatcaagaaataaaagtagacTCGGGGAACTGAGTTGCACGAGTGATAGTGAAGAAGACTCGGACTCGGAAGCCCTTGAGGATGTTGCTGAGATTAAGTCTAATGTAAGGTCTGAAGATGGTAGAGAAAATTTAGTGAGTAAAGACGCAAAAATGGAAGGCATAGGAATAGAGTCCACTTTAGTGTTGTCCGAATCTGATACGAAAGATTCTACAGCATTTGGAGGGTTGGAGAACAAGTTGAGGAAAATTGAAACGAATAATATGGATTATTCGGATGATGAAGGTCCTCCTGTTTTGAGTCCAATGATGCCGTTGTTACCACCACAAGAGGAAGATATGAATAGCCAGATGGATGAGATGAGTCATAAATTGAGTCCGATGGTCACTTTGGAAACAAAGATGGAGCAGGAAATGCAGGattgtaattttgaagatatgCAGATCAACTACcagaaaattgaagataagAATCAAACAAAGGATAAGAATTTGGAGGAATCTGAAGATTCAGAGTCTGAGAgtgaagatgaaaataaaatgtgcatCTATGAAGAAGCTGGGAATCGAGAGACTAAACCAAAAGGCACGAGTGCGATCAGTGACGATGAAGAAGATGCAGAAATGCAGgaaGAAACTAAGGAAGAGGGTACTGCACAAGAGAAAGGAGCAGAAGTAGCTTCTGCCGAATCTGAAGAAGAAAGTGAAAACGAGGAAGTAGAAGAGGAAGAGGATGAAGAGTCCGAAAATGAAAGTGAGCAGGTCCAAATTGCAAACCACAGTAGTCCTGCAACAATCGATCACTCAGAAACACTTTCACAAGATCTAGAAGGGGAAGATTCAGATCAAGAAGAGGTTGAAGAGGCTGAAGAGGCTGAAGAGGCTGAAGAAGGTGAAGAAGGTGAGGAGGAggaagatgaagatgaagaagtTGTAGAAGAGGAACCAGAAGAGAACTTCATAAATGAAAACGCTGAAGTTGAAGAGGAACTAGTCGAGAATAATTCTCTTGTGGAGGAAGAAGTCATAGGTGAAGAAAACTACGAAGACGAAGCGATGATAGACGACGAAATGAACAACGAAGAGCATTCCTTGCAGAATTTAAACAAGACCATCCTCACTGTGGGGAAGGATGCTGAAGGTAATCCCATCTTGATTCGCGAAGTAGTAACTCAATATCCTTACCAGGATGAATACGATTGCGAATCTGAATATCCAAACGTTTCACTTGAACAAACTCCTCTTTTTAATGCCGACGAAAATCAAAGATTATCGGGAGAAAACTTTGGCTTAAATAGTGATAGCCTCGACCAAACCATGACTGAGCCAGAAGTACAGACGGTAGATGAATTAGATCATCACGAGGAGGTGGAGACCGATGAACAAGTCGAAGACAAAGCTGATAGTGATATCGAAGAGTCAAGAACGAGTGCCAAAAGTTAA
- Protein Sequence
- MEPREHGYDELCRLCASYDAVKMGLFSQEGKNRQLVDKIQACLPFKVAEDDRLPKCLCLRCMFNLENFYDFRTACVNAVSLLETFLSADNSKNDGDRRSLTEHCSALRSELRSELLKEKEHMPILIPEAPVVNPNAALGTPPRLNSDGEADNDVEEVLEQSGTDEAADDAEDRKSEEYELDMETNPSDFLEMPPMLTEDVEENETAIVSPRARVRDSRGFQHKSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCYKAYSTAKHRWGHVSTSHRGHPAVTCSYCSRIYSTRGNLEEHIRSRHAGLPLPPELPVPYVQPENKYQCKTCPKMYTNTTDLNKHSRICIGSQQKELPNNDPTIEKLKKIQVETSDMSSNDSTNETKDYKNAEAKLAKNPQLTILKQALTKGDILKRSYDEKYKNSSKTKKQAKTDSNDIDVNKLWFCESCPQNFTSFDSFKEHELLHDAKKPYFCLLCEKDFAQKSSLSNHIVTMHGVDPHPIIDSDRCLKKSLLSHGWNKKSEPTNGEPNFNLIKKEEDSSPYPAISIENEEELPSNQDKIIEIDTVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYDPASFVQLNSNYYNENLNSNEGIEQPIDGDVEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSDPAVVIGESTANGSGTGPNGNGNRAQYHLFYICELCGNSHPSKWERWLHVSSIHGDDPEIKCERPDCAKIFATKTLRNEHAQHHAMQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSAHVKQKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEGHVLPDPSEYINDSGRLDNGEAMEVDFSCEMCGDLKFLSLEDLCNHRRITHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHKDVTCRFCKKTSASRDHLAAHIAKIHRYKSDVKNDTREPVNFRVAAPEEEVLHHCDRCKKDFYKRYLLRRHMKACHKYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLGIMTHNRINHMDHPDLTCELNHCKKLFRTKEDLESHKKDHRIHATPNVCDFCGDTAENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDTHRSILLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFKTCKQCLAVFITEESMRNHYEYVHNVPKDQLATFEYRLEIGRKRHYDNLEVVMKEEPEELEFDEEPAEDYSNDYKKGIYDSDDYDARADFYSRMNNEQEEQMRPLKKMKLDSKAKKKVKERQTYECENCKVQFNTKTQFWNHINLCPKRNMITKEEVTSFPTSILEAHLKNNNLIKREEPEQELDENNLNIPDFNLFEDINMQLSGQKPVQNLSLKSSSGSNKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTTYDDLAYHLKAAHEALLSCEGNNFTCKVCGRYHNARSKLLLHMSIHINCKNNPMCKKCKRSFETEEKLKEHIGNCEGRQSGLGIRHDAEDVKNEDNDENEDNDDNDEKGSFIGDEGDEREEKEGNYGSGEEKGSDNEDSSSDDSADSGTDSSSTSSDDENENEENEVAAESRNKSRLGELSCTSDSEEDSDSEALEDVAEIKSNVRSEDGRENLVSKDAKMEGIGIESTLVLSESDTKDSTAFGGLENKLRKIETNNMDYSDDEGPPVLSPMMPLLPPQEEDMNSQMDEMSHKLSPMVTLETKMEQEMQDCNFEDMQINYQKIEDKNQTKDKNLEESEDSESESEDENKMCIYEEAGNRETKPKGTSAISDDEEDAEMQEETKEEGTAQEKGAEVASAESEEESENEEVEEEEDEESENESEQVQIANHSSPATIDHSETLSQDLEGEDSDQEEVEEAEEAEEAEEGEEGEEEEDEDEEVVEEEPEENFINENAEVEEELVENNSLVEEEVIGEENYEDEAMIDDEMNNEEHSLQNLNKTILTVGKDAEGNPILIREVVTQYPYQDEYDCESEYPNVSLEQTPLFNADENQRLSGENFGLNSDSLDQTMTEPEVQTVDELDHHEEVETDEQVEDKADSDIEESRTSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01394568;
- 90% Identity
- iTF_01394568;
- 80% Identity
- -