Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392427.1:4605592-4622175[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00035 0.021 15.6 0.3 1 23 271 293 271 293 0.99

2 11 0.038 2.2 9.1 0.9 2 23 301 322 300 322 0.96

3 11 0.16 9.5 7.2 1.3 1 22 326 347 326 348 0.65

4 11 0.22 13 6.7 2.5 1 23 356 378 356 378 0.98

5 11 7.4e-05 0.0043 17.7 1.2 1 23 384 406 384 406 0.96

6 11 2.4e-06 0.00014 22.4 1.6 1 23 412 435 412 435 0.98

7 11 0.00038 0.022 15.5 0.8 1 21 440 460 440 465 0.93

8 11 0.00026 0.015 16.0 1.1 1 23 473 496 473 496 0.97

9 11 0.0012 0.07 13.9 4.0 1 23 502 525 502 525 0.97

10 11 4.7e-06 0.00027 21.5 2.5 2 23 534 555 534 555 0.98

11 11 0.065 3.8 8.4 0.5 6 23 565 583 562 583 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00035	0.021	15.6	0.3	1	23	271	293	271	293	0.99
2	11	0.038	2.2	9.1	0.9	2	23	301	322	300	322	0.96
3	11	0.16	9.5	7.2	1.3	1	22	326	347	326	348	0.65
4	11	0.22	13	6.7	2.5	1	23	356	378	356	378	0.98
5	11	7.4e-05	0.0043	17.7	1.2	1	23	384	406	384	406	0.96
6	11	2.4e-06	0.00014	22.4	1.6	1	23	412	435	412	435	0.98
7	11	0.00038	0.022	15.5	0.8	1	21	440	460	440	465	0.93
8	11	0.00026	0.015	16.0	1.1	1	23	473	496	473	496	0.97
9	11	0.0012	0.07	13.9	4.0	1	23	502	525	502	525	0.97
10	11	4.7e-06	0.00027	21.5	2.5	2	23	534	555	534	555	0.98
11	11	0.065	3.8	8.4	0.5	6	23	565	583	562	583	0.92

Sequence Information

Coding Sequence: ATGTCTTTCTCCGGCAAAAAGTACAAGAAGGTGAAAGTGGAAAATATAACAGAACACTTGAAGGGTTTTAAGTTCGAAACCAAAGTATTAAGTAACATGAGTGATTCCTCTGGTATTATATCTTTCACAAAGAACGCCGATGGAACCATCAGGTATATGAGCGTTTGCGGCGATGAAGTTAGATTAGATCAGATCATCGTCTTGAACAAGGAATCTGAGTACCTCACTCCTGACGGTCTTAAAATCAAAGTGTTCTTCACACTCGACGGCGACATTTTGACTAACAAATTGTCATACTCAGATGGCAGGGTCGTCAATTATGTCAGAGATTTTTCAGGCAGTGGATTGAAGATGAAAACACAAACGGTACTGCCCGTCCAGACATTGGCCAGCCAAACATTAGAAAAGACTGAGACTGTCATTAATTATATAGGACAAATAGAGATAAGCATAGACAATATAAAATATGAAGACAATGCCTATGATGATGATTTTCATACTGATGAAGATTTACCGCTAGTGTTGTTAAGTAAAAATGAAAGGGGTGTTGTTAAAAATGAAAAAAGTAAGAAGAAAAGAAAAAAATATGGAAAGTTACATTTGAAAGAAAACACATTAAATGAAGAAGAACAATTGGTTGAAAAAAGGTATAAAAACTCTAAAGGAAAAAGACAGAAGACAGTAAGAGAGGGTTTTAGCTCAAGAATGGTTCAAGAAACGGAAGAATATTTGGTTATCAAATTAACCAAAGAACAGGTTTTGGAAGAAATGAAAGAGAAATCAAAGAGTGAAAAATACAAAAGGTCTCTGTTCAAATGTGAGAATTGCGTTAAGGGATTCAATTTTGAAGATGTTCTGAGGGTACATATGGAAACACATTCTAGGGAACGCGGTCCATTAATGTGCGACATATGCACGCAGTACTGTCCGACCACAGTTTCATTAAGGGGCCATATTAAATCTCATACGACAAGGTATCAGTGTAAAGTATGCGGTGCAGTGCGTTTGTCGCGCCAACACTTGTTAGAGCATCACGCGTCTCACGCCGGCGGCGTCTTGCCAACGTACACTTGTGATTTCTGCACTTTCACCACTAACAAACGCACCGTGATTCAGCGTCACGTGAGATCGCATGCGAACCGCGAGCGACACGCGTGTGAAATGTGCGGAAAGTTGTTTAAAAATTTGGAATCCTTGAGGGTGCATACACTACGTCACGACACAACAAAACACTTCCAGTGCGAACTGTGTAGCCGAAAATTCATCTATCAATCACTGCTCAATAAACACATGAAATCAGTTCATTTGCACGAAGATTTTTATTGCGTTGAATGCGATGTCAAATTCAAATCGCCCGAAAATCTAAGGCTACATTTTAGAAACGCAAAGCGTCATAGAGACGCGTCTTCGTTCAGGCACCAATGTTCCCAATGCGCTGAGAAATTCGTGACGAGTTCGACGCTGTCGGTGCACTTGAGCACAGTGCACGGTGCGCCCAAACAGCACAGCTGCGACTTGTGCAGGCGACGGTACAGCAGCAGGGAGGCTTTGCGGTCGCACACCAGGAGGTTTCACGGCGGCGATAAAAAGCCGCAAGAGACGTGTCACATATGTCAGAAAACATTTGCGTACAAAAGCGTGTTGGCGAAACACCTGCGCACGCACACGGGTGAACGGCCCTATACGTGTTTCTGCGGTGCCGCCTTCGCACAACACGCCACGCTCAAAGCTCACCAATTGGCCAAACACAAGAAACAAGAAGATCAAGATTTACAATCGAATCAAATAGCGAATGAGACATAA
Protein Sequence: MSFSGKKYKKVKVENITEHLKGFKFETKVLSNMSDSSGIISFTKNADGTIRYMSVCGDEVRLDQIIVLNKESEYLTPDGLKIKVFFTLDGDILTNKLSYSDGRVVNYVRDFSGSGLKMKTQTVLPVQTLASQTLEKTETVINYIGQIEISIDNIKYEDNAYDDDFHTDEDLPLVLLSKNERGVVKNEKSKKKRKKYGKLHLKENTLNEEEQLVEKRYKNSKGKRQKTVREGFSSRMVQETEEYLVIKLTKEQVLEEMKEKSKSEKYKRSLFKCENCVKGFNFEDVLRVHMETHSRERGPLMCDICTQYCPTTVSLRGHIKSHTTRYQCKVCGAVRLSRQHLLEHHASHAGGVLPTYTCDFCTFTTNKRTVIQRHVRSHANRERHACEMCGKLFKNLESLRVHTLRHDTTKHFQCELCSRKFIYQSLLNKHMKSVHLHEDFYCVECDVKFKSPENLRLHFRNAKRHRDASSFRHQCSQCAEKFVTSSTLSVHLSTVHGAPKQHSCDLCRRRYSSREALRSHTRRFHGGDKKPQETCHICQKTFAYKSVLAKHLRTHTGERPYTCFCGAAFAQHATLKAHQLAKHKKQEDQDLQSNQIANET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386132;
90% Identity: iTF_01387901;
80% Identity: -