Stip006005.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392420.1:8718569-8728426[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00035 0.02 15.6 3.4 1 23 236 258 236 258 0.98 2 11 0.0011 0.064 14.0 10.3 1 23 264 286 264 286 0.97 3 11 0.00068 0.04 14.7 8.3 1 23 292 314 292 314 0.98 4 11 0.00092 0.053 14.3 1.0 1 23 320 342 320 342 0.97 5 11 9.3e-06 0.00054 20.5 0.9 1 23 348 370 348 370 0.97 6 11 0.00022 0.013 16.2 0.0 1 23 376 398 376 398 0.98 7 11 5.7e-05 0.0033 18.0 0.3 1 23 403 425 403 425 0.96 8 11 0.0018 0.1 13.4 0.3 3 22 433 452 432 455 0.90 9 11 5.2e-05 0.003 18.2 0.9 1 23 533 555 533 555 0.98 10 11 0.00026 0.015 16.0 1.5 1 23 618 640 618 640 0.96 11 11 3.8e-05 0.0022 18.6 4.3 1 23 650 672 650 672 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACCCCGAGCAATGTCACGGGTTTTGGTTACTCGTGGGGCTTTACAAGCTCTGCAGACCCTACCAAAGGCGAAGTGGAGACTCCAAGCAGCCTAAGTTATACATTAGGAAACACGGTATCACCGGAAACCACACTTACGGTGATGTCCCACAAGACTCCGCAAGTGCAGGAAAAAGTTGGTACAGTAGTACAAGTGACAAATTCAGCTGCACAAGTTACGAGGGTTGTCTCAGCTCCGGTAACAGCGAGGAGGGCCATGTTTGTACTGAATGAAGCGCCCACACACACTATAAATCGAGTATCCCAGCAAAACCAAACTGCTACGATTCAAACGGCAAACTTAGCAGCCAAATCGTTCATGACTCCAATAGGACCGTTACAGTTAACCGCAGAAGAATGTAATGAGATTTTAATGAAAAGAGCGCTTCAAGCTCAGGGAATTGCCACATCAGTGATTGATGCATCACAATTAAACCACAACCTTCTAAATGGCGGCCTGAAGGGTCTCACCGATGCTACATCACAACAGCCGCAGGATCCTTTAGCCGGTACACCGGTGCACCATCATTTACTACACACTAAGCAAGAACCGGGCACGGCCAACAGTTCTCCCAAAGCGGTATATTCACAGACGGAAATGATGAACACACAAACAATGACGAACGCAGCCCCGGCCACTGTCAAAGAACGTCCTTACTCGTGCGACGAATGTGGAAAGTCGTTTTTGTTGAAACACCATCTCACCACACACGCGAGAGTACACACTGGCGAGCGACCGCACGTGTGCTCACACTGTGGCAAGGCGTTCGCGCACAAGCACTGTCTCAACACTCACCTCAAGTTGCATTCGTCCGATCGCCCCTACCACTGTACTGACTGCAACAAGTCCTTCACGCTCAAACATCACTTGCTCACACATTCGAGGGTGCACAGTCGTGATCGGCCGTTTGTTTGCGGAGAGTGTGGTCGCGGATTCCCTTTGAAGCGCCATCTAGTGACTCACAGCAAGTACCACGCCGGCGAGAGACCGTACGTCTGTAGCGACTGTGGAGAAAGTTTTGCACAAAAGGAGCACCTGGTGATGCACAGCCGGTTCCACGGGTCGCTGTCGCCGTTCGTGTGCGGTGAGTGCGGGGCTGCGTACGCGCGCAAGTTCCAGCTGGTGAACCACGGCCGGGTGCACGGCAAGGTGCCCCACGCGTGCCCCGTCTGCGGCAAGGAGTTCTTGCAGAAGCGCACTCTCGCCGCACACATGAAAATACACACAGGGGAGGGTGTTGTTGCTTGTTTAGAATGCGGAGAAGCATTCAAGTCTAAAACCGAATTAGATACACATTACAAAATAACAAGACACTGCACGAACACGacaccctcacagcaacaacagcagcagcaacagcagcaacaacaacagcagcagcaacagcagcaacaacaacagcagcagcaacaacaacaacaacagcagcagcagcaacaacagcagcagcaacagACTGTTATAAAACAAGATGACTTTAAACCGCAAATTGTACAGGTGATCGGTGCGGATGGTCAAATAGTAACAGATAAGACTGCCCCAGGATATGTATGTTCAGAGTGTGGTTCATGCTTCAATACGAAGGAGGCGTTGTCGCTGCACGTCCGGTTGCACGCCGGCGACCGCACGTGTGTTACCGACCTATGTGCGCTCACAGCCGCCTTGCAGCCCGGCCTAGTGGCCGCACACCACGCCACACACAATCAACCAATTCAAATAATCTCGTCAGCGAACCCCAATAACGTAGTACATACGCAAGTCATAACCTCGAATCAATTAACACCGCCTCGACCTAAAATTCACTTTTGCGTAGAATGCGGCAAAGGTTTTGCAGCCAAACATGGCCTATTAGCACATCAAAGGAGACACCCGGACGGCAGCTGTACGCTTCGAACGCACGTGTGCGACCAGTGCGGGAAAGCCTTCTTCCAAAAGAACCATCTCATGCTACACCAGAGGCAACACATGGATCTGCCTCCTAGATCGTCTGCAGCGCAAGTGCAGCAGACGCAGCAGGCGGTGCAACAAGCGCAGCAGGCGGCGCAACAGGCTCAGCAGGCGCAGCAAGCGCAACAGGCGGCACAGCAAGCGCAGCAGGCGGCGCAACAGGTGCAGCAGCAAGTGCAGGTGCAACAGGTGCAACAGCACAACAACCTCGACATCGACCATCAGGATCACCAGCCGACACACATACAAGTGGTGACGAACCGATCTGGACAGGTGATAGGCAACCAGATAGTGGTGGGCACAGTGGGCCGTCGACTCGTGGGCTCGCAGCTGCACATCGTGGGCCGAGACGGCAAGCCGGTCGTAGCCCATCACGCGAAACCGAGACACCACAACGCGGGTGACGTGAAGGAAATGGGAGGTTTGGTTTTATCGACGGGGCGAGGGACGGGACTAATCAAGTACGAGATCTCCATACCGCCCCCCACGTCCGTTGTGCAGGTCCAGCAACTCGACTGA
- Protein Sequence
- MCMPTPSNVTGFGYSWGFTSSADPTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGTVVQVTNSAAQVTRVVSAPVTARRAMFVLNEAPTHTINRVSQQNQTATIQTANLAAKSFMTPIGPLQLTAEECNEILMKRALQAQGIATSVIDASQLNHNLLNGGLKGLTDATSQQPQDPLAGTPVHHHLLHTKQEPGTANSSPKAVYSQTEMMNTQTMTNAAPATVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCSHCGKAFAHKHCLNTHLKLHSSDRPYHCTDCNKSFTLKHHLLTHSRVHSRDRPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPFVCGECGAAYARKFQLVNHGRVHGKVPHACPVCGKEFLQKRTLAAHMKIHTGEGVVACLECGEAFKSKTELDTHYKITRHCTNTTPSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTVIKQDDFKPQIVQVIGADGQIVTDKTAPGYVCSECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHHATHNQPIQIISSANPNNVVHTQVITSNQLTPPRPKIHFCVECGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSSAAQVQQTQQAVQQAQQAAQQAQQAQQAQQAAQQAQQAAQQVQQQVQVQQVQQHNNLDIDHQDHQPTHIQVVTNRSGQVIGNQIVVGTVGRRLVGSQLHIVGRDGKPVVAHHAKPRHHNAGDVKEMGGLVLSTGRGTGLIKYEISIPPPTSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386067;
- 90% Identity
- iTF_01387823;
- 80% Identity
- -