Sand003314.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synanthedon andrenaeformis
Gene Symbol
-
Assembly
GCA_936447275.2
Location
CAKZFQ020000173.1:529665-540737[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00041 0.026 15.4 3.4 1 23 236 258 236 258 0.98
2 11 0.0013 0.082 13.8 10.3 1 23 264 286 264 286 0.97
3 11 0.00082 0.051 14.4 8.3 1 23 292 314 292 314 0.98
4 11 0.0011 0.068 14.0 1.0 1 23 320 342 320 342 0.97
5 11 1.1e-05 0.00069 20.3 0.9 1 23 348 370 348 370 0.97
6 11 0.00026 0.016 16.0 0.0 1 23 376 398 376 398 0.98
7 11 6.8e-05 0.0042 17.8 0.3 1 23 403 425 403 425 0.96
8 11 0.0021 0.13 13.1 0.3 3 22 433 452 432 455 0.90
9 11 6.2e-05 0.0038 18.0 0.9 1 23 537 559 537 559 0.98
10 11 0.00021 0.013 16.3 1.5 1 23 622 644 622 644 0.96
11 11 4.5e-05 0.0028 18.4 4.3 1 23 654 676 654 676 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCAACCCCGAGCAATGTCACGGGTTTTGGTTACTCGTGGGGCTTTACTAGCTCTGCAGACCCTACCAAAGGTGAAGTGGAGACTCCAAGCAGCCTAAGTTATACATTAGGAAACACGGTATCACCGGAAACTACACTAACGGTGATGTCCCACAAGACTCCACAAGTGCAGGAAAAAGTTGGTACAGTAGTACAAGTGACAAATTCAGCTGCACAAGTTACGAGGGTTGTCTCAGCTCCGGTAACAGCAAGGAGGGCCATGTTTGTACTGAATGAAGCACCCACACACACTATAAATCGAGTATCCCAGCAAAACCAAACTGCTACGATCCAGACGGCAAACTTAGCAGCAAAATCATTCATGACTCCAATAGGACCGTTACAGTTAACTGCGGAAGAATGTAATGAGATTTTAATGAAAAGAGCACTTCAGGCTCAGGGAATCGCCACATCAGTGATTGATGCATCACAATTAAACCACAACCTTCTAAATGGCGGCCTGAAGGGTCTCACCGATGCTACATCACAACAGCAGCAAGATCCTTTAGCCGGTACACCGGTGCACCATCATTTACTACACGCTAAGCAAGAACCGGGCACGGCCAACAGTTCTCCCAAAGCGGTATATTCACAGACGGAAATAATGAACACACAAACGATGACGAACGCAGCCCCGGCCACTGTCAAAGAACGTCCTTACTCCTGCGACGAATGTGGAAAGTCGTTTTTGTTGAAACACCATCTCACCACTCACGCGAGAGTACACACTGGCGAGCGACCGCACGTGTGCTCACACTGTGGCAAGGCGTTCGCGCACAAGCACTGCCTCAACACTCACCTCAAGTTGCACTCGTCCGATCGCCCCTACCACTGTACGGACTGCAACAAGTCTTTCACGCTCAAACATCACTTGCTCACACATTCGAGGGTGCACAGTCGAGATAGGCCGTTTGTCTGCGGAGAGTGCGGTCGCGGATTCCCTTTGAAGCGCCATCTAGTGACACACAGCAAGTACCACGCAGGCGAAAGACCGTATGTCTGTAGCGACTGTGGAGAAAGTTTTGCGCAAAAGGAGCACCTGGTTATGCACAGCCGGTTCCACGGGTCGCTGTCGCCGTTCGTATGCGGTGAGTGCGGGGCGGCGTATGCGCGCAAGTTCCAACTGGTGAACCACGGCCGGGTGCACGGCAAGGTGCCCCACGCGTGCCCCGTCTGCGGCAAGGAGTTCTTGCAGAAGCGCACTCTCGCCGCACACATGAAAATACACACAGGGGAGGGTGTTGTTGCTTGTTTAGAATGCGGAGAAGCCTTCAAGTCTAAAACCGAATTAGATACACATTATAAAATaacaagacactgcaccaacacaacaccctcacagcaacaacagcagcagcagcaacaacaacaacaacaacagcagcagcaacaacaacagcagcaacaacagcagcagcagcagcaacaacaacaacagcagcagcagcagcagcagcaacaacagcaacagactgttataaaacaagATGACTTTAAACCGCAAATTGTACAGGTGATCGGTGCGGATGGTCAAATAGTAACGGAAAAGACTGGCCCAGGATATGTGTGTTCAGAGTGTGGTTCATGTTTCAATACGAAGGAGGCGTTGTCGCTGCACGTCCGGTTGCACGCCGGCGACCGCACGTGTGTCACCGACCTATGTGCGCTCACAGCCGCCTTGCAGCCCGGCCTAGTGGCCGCACACCACGCCACACACAATCAACCAATTCAAATAATCTCGTCAGCGAACCCCAATAACGTAGTACATACGCAAGTCATAACTTCGAATCAGTTAACACCACCTCGACCTAAAATTCACTTTTGCGTAGACTGCGGCAAAGGTTTTGCAGCTAAACACGGCCTATTAGCACATCAAAGGAGACACCCGGACGGCAGCTGTACGCTTCGAACGCACGTGTGCGACCAGTGCGGGAAAGCTTTCTTTCAAAAGAACCATCTCATGCTACACCAGAGACAACACATGGATTTGCCTTCTAGATCGATCTTCTTTTACGAAAATGCAAGTGCCGGTGTGCGGAACCCACCCCGGGTTGAGGAATACGCGAGCGGTGGGAATGCTAAGAGCGGAGCGGGCAGTCGTAAACCAGTTTGCGTTTTAAGCTTGTACGCGCTGAATGTGTATCTAAATGAAGTAACGGGAGTTACAGCCGCGAGATTCGACCTCCGCTACCGGTCTTCCGCCGTTCGCCACCGCCACCGCTCCGCCGGCACTGTGCTCGTAACCTTACTCGTGCCTCGAATCCGGCTGCGCACAAAACAAGTCGAGTACACGTTTCGGCGATACCCCGCAGGCACACGCACTAAAATTAGTTTTGTCACTGACCGTGAAAATATTTGTGCAAAGTCTGCAGCGCAAGTGCAGCAGACGCAGCAGGCGGTGCAGCAAGCGCAGCAGGCGGCGCAACAGGCTCAGCAGGCGCAGCAAGCGCAACAGGCGGCACAGCAAGCACAGCAGGCAGCGCAACAGGTGCAGCAGCAAGTGCAGGCACAGGTGCAGCAGGTGCAGCACAACAACCTCGACATCGACCATCAGGATCACCAGCCGACACACATACAAGTGGTGACGAACCGATCTGGACAGGTGATAGGTAACCAGATAGTGGTGGGCACAGTGGGCCGTCGACTCGTGGGCTCGCAGCTGCACATCGTGGGCCGAGACGGCAAGCCGGTCGTAGCCCATCACGCCAAACCGAGACACCACAACGCGGGTGACGTGAAGGAAATGGGGGGTTTGGTGTTGTCGACGGGGCGAGGGACAGGACTAATCAAGTACGAGATCTCCATACCGCCCCCCACGTCCGTTGTGCAGGTCCAGCAACTCGACTGA
Protein Sequence
MCMPTPSNVTGFGYSWGFTSSADPTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGTVVQVTNSAAQVTRVVSAPVTARRAMFVLNEAPTHTINRVSQQNQTATIQTANLAAKSFMTPIGPLQLTAEECNEILMKRALQAQGIATSVIDASQLNHNLLNGGLKGLTDATSQQQQDPLAGTPVHHHLLHAKQEPGTANSSPKAVYSQTEIMNTQTMTNAAPATVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCSHCGKAFAHKHCLNTHLKLHSSDRPYHCTDCNKSFTLKHHLLTHSRVHSRDRPFVCGECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPFVCGECGAAYARKFQLVNHGRVHGKVPHACPVCGKEFLQKRTLAAHMKIHTGEGVVACLECGEAFKSKTELDTHYKITRHCTNTTPSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTVIKQDDFKPQIVQVIGADGQIVTEKTGPGYVCSECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAHHATHNQPIQIISSANPNNVVHTQVITSNQLTPPRPKIHFCVDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPSRSIFFYENASAGVRNPPRVEEYASGGNAKSGAGSRKPVCVLSLYALNVYLNEVTGVTAARFDLRYRSSAVRHRHRSAGTVLVTLLVPRIRLRTKQVEYTFRRYPAGTRTKISFVTDRENICAKSAAQVQQTQQAVQQAQQAAQQAQQAQQAQQAAQQAQQAAQQVQQQVQAQVQQVQHNNLDIDHQDHQPTHIQVVTNRSGQVIGNQIVVGTVGRRLVGSQLHIVGRDGKPVVAHHAKPRHHNAGDVKEMGGLVLSTGRGTGLIKYEISIPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01387823; iTF_01386964; iTF_01388767;
90% Identity
-
80% Identity
-