Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392413.1:3863278-3868769[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1e-06 6.1e-05 23.5 1.4 1 23 484 506 484 506 0.98

2 8 1.8e-06 0.0001 22.8 1.2 1 23 511 533 511 533 0.98

3 8 8.3e-06 0.00049 20.7 0.6 2 23 542 563 542 563 0.98

4 8 7.1e-06 0.00042 20.9 0.7 1 23 569 591 569 591 0.99

5 8 1.7e-07 9.6e-06 26.0 1.8 1 23 597 619 597 619 0.98

6 8 2e-06 0.00012 22.6 1.1 1 23 625 647 625 647 0.97

7 8 9.9e-05 0.0058 17.3 7.3 1 23 653 675 653 675 0.97

8 8 0.00015 0.0085 16.8 0.9 1 22 681 702 681 702 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1e-06	6.1e-05	23.5	1.4	1	23	484	506	484	506	0.98
2	8	1.8e-06	0.0001	22.8	1.2	1	23	511	533	511	533	0.98
3	8	8.3e-06	0.00049	20.7	0.6	2	23	542	563	542	563	0.98
4	8	7.1e-06	0.00042	20.9	0.7	1	23	569	591	569	591	0.99
5	8	1.7e-07	9.6e-06	26.0	1.8	1	23	597	619	597	619	0.98
6	8	2e-06	0.00012	22.6	1.1	1	23	625	647	625	647	0.97
7	8	9.9e-05	0.0058	17.3	7.3	1	23	653	675	653	675	0.97
8	8	0.00015	0.0085	16.8	0.9	1	22	681	702	681	702	0.95

Sequence Information

Coding Sequence: ATGTGCGAATGGCTTTCACGTGAAGAGTGGTGTGACGTGCAGCTATTATGCAGCGGAAGGGCGTTTAGCGCACATCGAGCTGTTCTTGCTAGTGTCAGCACTTTTCTGAGGAGAACACTGCTGTCATGTCCAATAGAAGAATCCCAAACATATATCGTCTTACCAGACTTCGACGTGGACGCAATGTCTTCAGTTCTTTATTACGTTTACAACGGGGAAGTAATTGTGGCCAAACAAAAATTAGTGATGTTTTTAGAAATTGTAAAAGCTTTACAAATATTTGTGGATCAGACTTTTTTGGAAACAATTAGCGGAACTATAAATGATAGTGATAAATATTTCAACTATGAAGATTTACACATAATTAAAGAGAACGCATTTATTTTATCATCAAACAAAAGAAAACATCAGCAATATGTTACTCTTAAAAAAGGAAAACAATTTGTGGAAATGCCTTCGCAATATTCAGTTGTCCGTTCCGATATTAGCAGTAACCAGGTAAGATGTCAGAACTGGATTGAACATGTGCCTTATTTGGAAAATGTGCAATCGTCACACGAGGACCGACAAAGAGACTCTTCTCTACGTGATTCATTTATCGAGACATATCCTCGAAACGGTAAAGCTAACGGTCGTACGGTAGGCGTGCCAGTAATATCAAATGAACGCTATCGTGAACCGACATCTGCACTCCTGACGAATGCAAATGGTAAACATCTTAAACCTGTAGACGCATTCCCTGTAGCTTTACCTAAAACATTAGAAATTTCTAATGTAAAATCACTACAACAAAACGCACACGGAATTTTCAATGATGCTAGACTTGATGATACTCTCACAAATATTTCAAAAAAAGTAGAAAATTCAGAATTTAATATGAAATTGTTTTTAGAAACTTCCGTGCCAGAAAAACCTTCTATAACAGGAATAAGTGGTTGTGACTTGAAGTCACCATTGACAATGTTTCCTTTAGGTTTGACTGAATGTTCGTTGGCTCGGAATCATATGACATCGTTAGACCTCAGGGTCGGAAATATTATTAATGATACAGTCCATCATCAGATTTGGAGCAATGGGAATTGTTCAAAAACATCTGCAAATAGTTTTAAGGATTTTCATACAGACTCGTGTAAAAAGAACCAAATTAGTCTAAGTAACAACTTAACTAAAGTTGCGATTTTAAATAAAGCAATGGAGAGTCCTTGGTGCTCGCGAATACCACTAAACTACAAACCGTTTCGAAGAAAAGAACACACCACCATACGCGCTTCAAAAGAAAATGCTGCAAAACTCAGGAAAATTCAGGAAAACGATAATAATAATAACTTAGAGGATACAAAAACTACGGAAATTAAACTTGACTCAGACAATGATAAAGTTATCAAAAATGCAACCAAGGAGATATTGAATAATTCATATTCTATAGACAGTCTTATTGCAAAAGATAATTTCGAATGTACGGTTTGTAATCAGATGTTCACAAGTAATGAATCCCTCTCAACGCACATGAGACGCCACACGTCAGCTCGGTACTCCTGCGCGGAGTGTGGCAAAACTTTCTCGCAGCTTCGTAACTACAAGTATCACATGTCGGTACATCGAGGCACCAGGGAGTTTGCTGCTACCTGTACCGTGTGCGGGAAATACTTCAACGATAGGGGTTATTTGAGCAGTCATATGAAAATACACAGGAATCGTAAGGAGTACAAATGTTCAATGTGTCCGAAGTCGTTCAACCAGCGGGTCGCATACAATATGCACGTCAGAATCCACACAGGCGTAAAACCGCACGTGTGCGGTGAGTGCGGCAAGGCGTTTTCTCGCAAGATGTTGTTGAAGCAGCACCAACGCACGCACTCTGGGGAACGGCCGTATGCGTGTGCGCACTGCGGGAAGCGATTCGCGGATCGCTCCAACATGACTCTGCATTTGCGACTTCACACAGGAATCAAACCTTTCTCTTGCACATTGTGTCCAAAGTCATTCACAAAGAAGCACCATTTGAAGTCTCATTTGAACTTCCACACTGGAGCAAAACCTTACTCGTGTCCGCGCTGCAAACTGGGCTTCACACAATCCTCTAACATGCGAACACACCTAAAGAAATGTAACGCACCGGATCCAGCTTCTACTGTTGTTGGAATAGATCCTAATAAAGCATAA
Protein Sequence: MCEWLSREEWCDVQLLCSGRAFSAHRAVLASVSTFLRRTLLSCPIEESQTYIVLPDFDVDAMSSVLYYVYNGEVIVAKQKLVMFLEIVKALQIFVDQTFLETISGTINDSDKYFNYEDLHIIKENAFILSSNKRKHQQYVTLKKGKQFVEMPSQYSVVRSDISSNQVRCQNWIEHVPYLENVQSSHEDRQRDSSLRDSFIETYPRNGKANGRTVGVPVISNERYREPTSALLTNANGKHLKPVDAFPVALPKTLEISNVKSLQQNAHGIFNDARLDDTLTNISKKVENSEFNMKLFLETSVPEKPSITGISGCDLKSPLTMFPLGLTECSLARNHMTSLDLRVGNIINDTVHHQIWSNGNCSKTSANSFKDFHTDSCKKNQISLSNNLTKVAILNKAMESPWCSRIPLNYKPFRRKEHTTIRASKENAAKLRKIQENDNNNNLEDTKTTEIKLDSDNDKVIKNATKEILNNSYSIDSLIAKDNFECTVCNQMFTSNESLSTHMRRHTSARYSCAECGKTFSQLRNYKYHMSVHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCSMCPKSFNQRVAYNMHVRIHTGVKPHVCGECGKAFSRKMLLKQHQRTHSGERPYACAHCGKRFADRSNMTLHLRLHTGIKPFSCTLCPKSFTKKHHLKSHLNFHTGAKPYSCPRCKLGFTQSSNMRTHLKKCNAPDPASTVVGIDPNKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386963;
90% Identity: iTF_01386963;
80% Identity: iTF_01388662;