Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000047.1:632292-637836[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.2e-07 3e-05 24.5 1.0 1 23 477 499 477 499 0.98

2 8 1.7e-06 9.9e-05 22.8 1.2 1 23 504 526 504 526 0.98

3 8 8.1e-06 0.00046 20.7 0.6 2 23 535 556 535 556 0.98

4 8 7e-06 0.0004 20.9 0.7 1 23 562 584 562 584 0.99

5 8 1.6e-07 9.2e-06 26.1 1.8 1 23 590 612 590 612 0.98

6 8 2e-06 0.00011 22.7 1.1 1 23 618 640 618 640 0.97

7 8 9.7e-05 0.0055 17.3 7.3 1 23 646 668 646 668 0.97

8 8 0.00014 0.0081 16.8 0.9 1 22 674 695 674 695 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.2e-07	3e-05	24.5	1.0	1	23	477	499	477	499	0.98
2	8	1.7e-06	9.9e-05	22.8	1.2	1	23	504	526	504	526	0.98
3	8	8.1e-06	0.00046	20.7	0.6	2	23	535	556	535	556	0.98
4	8	7e-06	0.0004	20.9	0.7	1	23	562	584	562	584	0.99
5	8	1.6e-07	9.2e-06	26.1	1.8	1	23	590	612	590	612	0.98
6	8	2e-06	0.00011	22.7	1.1	1	23	618	640	618	640	0.97
7	8	9.7e-05	0.0055	17.3	7.3	1	23	646	668	646	668	0.97
8	8	0.00014	0.0081	16.8	0.9	1	22	674	695	674	695	0.95

Sequence Information

Coding Sequence: ATGTGCGAATGGCTTTCACGTGAAGAGTGGTGTGACGTGCAGCTATTATGCAGCGGGAGGGCGTTTAGCGCACATCGAGCTGTTCTTGCTAGTGTCAGCACTTTTCTGAGGAGAACACTGCTGTCATGTCCAATAGAAGAATCCCAAACATATATCGTCTTACCAGACTTCGATGTGGACGCAATGTCTTCGGTTCTTTATTACGTATACAACGGGGAAGTAATTGTAGCCAAACAAAAATTAGAGATGTTCTTAGAAATTGTAAAAGCTTTACAAATATTTGTGGATCAGACATTTTTGAACACAATTAGCGGAACTATAAATGATACTGATAAATATTTTAACCATGCAGATTTACACAGGATCAAAGAGAACGCATTTATTTTATCATCAAACAAAAGAAAACACCAGCAATATGTTACTCTTAAGAAAGGACAAAAAATTGTGGAAATGCCTTCGCAATATTCACTTGTCCGTTCTGATATTAGCAGTAAACAGGTAAGATGTCAGAACTGGATTGAACATGTGCCTTATTTGGAAAATGTGCAATCGTCACACGAGGACCGACAAAGAGACTCTTCTCTACGTGATTCATTTATCGAGACATATCCTCGAAACGGTAAAGCTAACGGTCGTACGGTAGGCGTGCCAGTAATATCAAATGAACGCTATCGTGAACCGACATCTGCACTCCTGACGAATGCAAATGGTAAACATCTTAAACCTGTAGACGCATTCCCAGCTTTACCTAAAACACTAGCAATTTCTAATGTAAAATCACTACAACAAAACGCACACGGAATTTTCAATGATGCTAGACTTGATGATACTCTGACAAATATTTCAAACAAAGTAGAAAATTCAGAATTTAATACGAAATTGCTTCTAGAAACTTCCGTGCCAGAAAAACCTTCTATAACAGGAATAAGTGAATTGAAGTCACCATTGAGACTGTTTCCATTAGGTTTGACTGAATGTTCCTTGACTAGGAATTATATGACATCGTTAGACCTCAGAGTCGGAAACATCATTAACGATACAGTCAATCATCAGATTTGGAGCAATGGGAATTGTTCAAAAACATCTGCAAATAGTTTTAAGGATTTTCATACAGACTCGTATAAAATGAACCAAATCTGTGTTAGTAACAACTTAACAAAAGTTGCAATTTTAAATAAAGCAATGGAGAGTCCTTGGTGCTCGCGAATACCACTAAACTACAAACCGTTTCGAAGAAAAGAACACACTAACATACTCGCTaaaaaaGAAAATGCTACAAAACTTAAGAACGATGATAATAATAACTTAGAGGATACAACGACTGCCGAAATTAAACTTAACTTAGACAATGATAAAATTTTCAAAAATGCAACCAAGGAGATATTGAATAATTCATATTCCATAGACAGTCTTATTGCAAAAGATAATTTCGAATGTACAGTTTGTAATCAGGTGTTCACAAGTAATGAATCCCTCTCAACGCACATGAGACGCCACACGTCAGCTCGGTACTCCTGCGCGGAGTGTGGCAAAACTTTCTCGCAGCTTCGTAACTACAAGTATCATATGTCGGTACATCGAGGCACCAGGGAGTTTGCTGCCACCTGTACTGTGTGCGGGAAATACTTCAACGATAGAGGTTATTTGAGCAGCCATATGAAAATACACAGGAATCGTAAAGAGTACAAATGTTCAATGTGTCCGAAATCGTTCAATCAGCGGGTCGCATACAATATGCACGTCAGAATCCACACAGGCGTAAAACCGCACGTGTGCGGTGAGTGTGGCAAGGCGTTTTCTCGCAAGATGTTGTTGAAGCAGCACCAGCGCACGCACTCTGGGGAGCGGCCGTATGCGTGTGCGCACTGCGGGAAGCGATTCGCGGATCGCTCCAACATGACACTGCATTTGCGACTTCACACAGGAATCAAACCGTTCTCTTGCACATTGTGTCCAAAGTCTTTCACAAAGAAGCACCATTTGAAGTCTCATTTGAACTTCCACACTGGAGCAAAACCTTACTCATGTCCGCGCTGCAAGTTGGGCTTCACACAATCCTCTAACATGCGAACACACCTCAAGAAATGTAACGCACCGGATCCAGCTTCTACTGTTGTTTGA
Protein Sequence: MCEWLSREEWCDVQLLCSGRAFSAHRAVLASVSTFLRRTLLSCPIEESQTYIVLPDFDVDAMSSVLYYVYNGEVIVAKQKLEMFLEIVKALQIFVDQTFLNTISGTINDTDKYFNHADLHRIKENAFILSSNKRKHQQYVTLKKGQKIVEMPSQYSLVRSDISSKQVRCQNWIEHVPYLENVQSSHEDRQRDSSLRDSFIETYPRNGKANGRTVGVPVISNERYREPTSALLTNANGKHLKPVDAFPALPKTLAISNVKSLQQNAHGIFNDARLDDTLTNISNKVENSEFNTKLLLETSVPEKPSITGISELKSPLRLFPLGLTECSLTRNYMTSLDLRVGNIINDTVNHQIWSNGNCSKTSANSFKDFHTDSYKMNQICVSNNLTKVAILNKAMESPWCSRIPLNYKPFRRKEHTNILAKKENATKLKNDDNNNLEDTTTAEIKLNLDNDKIFKNATKEILNNSYSIDSLIAKDNFECTVCNQVFTSNESLSTHMRRHTSARYSCAECGKTFSQLRNYKYHMSVHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCSMCPKSFNQRVAYNMHVRIHTGVKPHVCGECGKAFSRKMLLKQHQRTHSGERPYACAHCGKRFADRSNMTLHLRLHTGIKPFSCTLCPKSFTKKHHLKSHLNFHTGAKPYSCPRCKLGFTQSSNMRTHLKKCNAPDPASTVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386884; iTF_01385958; iTF_01387821; iTF_01386064; iTF_01387761; iTF_01388766; iTF_01388662;
90% Identity: iTF_01386884; iTF_01385958; iTF_01387821; iTF_01386064; iTF_01387761; iTF_01388766; iTF_01388662;
80% Identity: iTF_01386884;