Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392411.1:10499604-10506325[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.00011 0.0062 17.2 3.8 1 23 193 215 193 215 0.97

2 27 0.0011 0.066 14.0 0.7 2 20 247 265 246 267 0.93

3 27 0.0002 0.012 16.3 0.7 1 23 292 315 292 315 0.96

4 27 0.0084 0.49 11.2 3.8 1 23 364 387 364 387 0.97

5 27 0.00087 0.051 14.3 0.2 1 23 404 426 404 426 0.96

6 27 0.00035 0.021 15.6 0.9 3 23 457 478 455 478 0.91

7 27 0.011 0.61 10.9 2.7 2 23 515 537 515 537 0.96

8 27 0.00036 0.021 15.5 0.8 1 23 587 610 587 610 0.97

9 27 0.0045 0.26 12.1 0.3 1 23 669 691 669 691 0.97

10 27 0.00059 0.035 14.8 3.6 2 23 703 724 702 724 0.96

11 27 0.071 4.2 8.3 1.8 2 23 736 757 735 757 0.96

12 27 0.0012 0.072 13.8 0.3 1 23 767 789 767 789 0.98

13 27 0.0065 0.38 11.6 2.2 2 23 823 844 822 844 0.94

14 27 0.003 0.18 12.6 4.3 1 23 855 877 855 877 0.98

15 27 0.00023 0.013 16.2 0.2 1 23 885 907 885 907 0.98

16 27 0.0033 0.19 12.5 0.1 2 23 927 949 926 949 0.97

17 27 0.63 37 5.3 0.7 1 23 967 989 967 989 0.96

18 27 0.025 1.5 9.7 2.1 3 23 1030 1051 1028 1051 0.94

19 27 0.00088 0.051 14.3 0.5 1 23 1073 1095 1073 1095 0.97

20 27 0.48 28 5.7 0.5 2 20 1099 1117 1098 1118 0.89

21 27 8.4 4.9e+02 1.8 2.5 2 23 1138 1160 1137 1160 0.82

22 27 0.0055 0.32 11.8 0.6 1 23 1175 1197 1175 1197 0.96

23 27 0.0068 0.39 11.5 1.3 2 23 1236 1258 1235 1258 0.96

24 27 0.99 58 4.7 2.9 2 23 1275 1293 1275 1293 0.90

25 27 0.4 23 6.0 1.4 2 21 1297 1316 1297 1317 0.93

26 27 0.12 6.8 7.6 0.4 2 23 1365 1386 1364 1386 0.95

27 27 0.0016 0.092 13.5 0.4 2 23 1397 1419 1396 1419 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.00011	0.0062	17.2	3.8	1	23	193	215	193	215	0.97
2	27	0.0011	0.066	14.0	0.7	2	20	247	265	246	267	0.93
3	27	0.0002	0.012	16.3	0.7	1	23	292	315	292	315	0.96
4	27	0.0084	0.49	11.2	3.8	1	23	364	387	364	387	0.97
5	27	0.00087	0.051	14.3	0.2	1	23	404	426	404	426	0.96
6	27	0.00035	0.021	15.6	0.9	3	23	457	478	455	478	0.91
7	27	0.011	0.61	10.9	2.7	2	23	515	537	515	537	0.96
8	27	0.00036	0.021	15.5	0.8	1	23	587	610	587	610	0.97
9	27	0.0045	0.26	12.1	0.3	1	23	669	691	669	691	0.97
10	27	0.00059	0.035	14.8	3.6	2	23	703	724	702	724	0.96
11	27	0.071	4.2	8.3	1.8	2	23	736	757	735	757	0.96
12	27	0.0012	0.072	13.8	0.3	1	23	767	789	767	789	0.98
13	27	0.0065	0.38	11.6	2.2	2	23	823	844	822	844	0.94
14	27	0.003	0.18	12.6	4.3	1	23	855	877	855	877	0.98
15	27	0.00023	0.013	16.2	0.2	1	23	885	907	885	907	0.98
16	27	0.0033	0.19	12.5	0.1	2	23	927	949	926	949	0.97
17	27	0.63	37	5.3	0.7	1	23	967	989	967	989	0.96
18	27	0.025	1.5	9.7	2.1	3	23	1030	1051	1028	1051	0.94
19	27	0.00088	0.051	14.3	0.5	1	23	1073	1095	1073	1095	0.97
20	27	0.48	28	5.7	0.5	2	20	1099	1117	1098	1118	0.89
21	27	8.4	4.9e+02	1.8	2.5	2	23	1138	1160	1137	1160	0.82
22	27	0.0055	0.32	11.8	0.6	1	23	1175	1197	1175	1197	0.96
23	27	0.0068	0.39	11.5	1.3	2	23	1236	1258	1235	1258	0.96
24	27	0.99	58	4.7	2.9	2	23	1275	1293	1275	1293	0.90
25	27	0.4	23	6.0	1.4	2	21	1297	1316	1297	1317	0.93
26	27	0.12	6.8	7.6	0.4	2	23	1365	1386	1364	1386	0.95
27	27	0.0016	0.092	13.5	0.4	2	23	1397	1419	1396	1419	0.96

Sequence Information

Coding Sequence: ATGGCCCTCAAACTAGGGAAATGCAGACTTTGTCTGAAACTCGGAGACTTTTACTCCATATTCACAACAGACAATGACTTACAACTATCTGAAATGGTTATGGAATGCACCAGAGTTAAAATATTTGATGGCGATGGATTACCAGACAAGGTTTGTTCTGAATGCATTCAGAAACTTAGCAGTGCATACATATTTAAACAACAATGTGAGAGAGCAGACCTAGAGCTACGAAGGAATTACGTACCTCCACCAGGTTTTACGCCACCACCACCAAACAGACAGAGCAGTGATTCCGCTTTTTCCAATCAAACGGATATTTCTTATCAGAATAAACCATCATCTTCTACCGAAGGTAAAGCCTTTCCAGCCACCCGAAAACGCAGTCACGAGAGTATTGACAATGCTTCCTCCAGCAGTCAGTCGCATGACTACAATCCGAGCGGCTCCTCGAAGAAGGTCAAAAAACCCAAACCCATTGCCCAGCCTCAATACAATTCTGACACAGATTTTGATGACAACAGTGGATCAGTGCATTCCGCTGAAGAGGAATCGGACTCTCAAAGAAAGTTGGAGGAGTTCCCTTGCCCGGTCTGCGGCAAATGTTTTGCAACGAAACATAGTATGTCCCAGCACTCGAAAAGTCATTCCCGCAAGAGCTTAACGAAATTAGGTGAAAACGCTGTAGTTAACATACCGAAGAGTAATGTGGAAGACGCTAAGGACGTTGAAGATAGGCTTACGTGTGAGAAGTGTGGAAAGAATTTCAAATTAAAGATCATGCTAAAACGTCACTATGACAAATGCGAGAACACGTTGAAAACTCAAAAGGAATTGTTGATTACACTGGAGCCCGTAGACGCAGTGATCAACACGTTTCAATGTGAAATTTGCACGGCAAAATTCAAGACTGAAGACAAGTTTCGAATACACATGAAAGCGATACATTCAATGAAAAGTGAAAAGTTGGACGCGGCTGAAACGCCAACAGACGTATCGATGCCGTGCATTTTCTGCAAGGAACAGTTCAACGATTACTATTTGTACACATCGCACTTCAACTCGTGCTCAAAGAGAAAGGACACGGATGAATTTGAATGTCCCCTGTGTCAGAGAATGTTGTCGAGGCGGAACACGTTCTTCACTCACATTAGGAACTGTCACTTTGAAACGAGACCGGCTAAACCGCAAGATAAAGGTGGCAGTGACAATTTTGTTTGTCGCATATGCAACAAGAAACTTAGCAATCAGAATCAGCTCATAGAACATCTCGCTGCACATATGTCAAACATGAGTGGAGAATTGGATGAATCTGGGGTTAGCTCACTAAATGATCAGATAGAAACTCCCAATTCAGATTCACTGTTAGATTGTAGTTATTGTGGTAAACAGTTTAAGGGCAAGAAGTGGCTAATGAAACACCTCACTGCTAAACACAATGTCAGCCAACTCGAATTACCATCCACAGCAGTCAATAAGAGTTTACCCAAGGTGATATATAAGGACGACGAGTCTGATTCTAGTCACGACGAAACTGAAGACAATACGTGTGATATATGTGAGAAACAATTCTCATACAGACGTACATTCCTGCAACATAAACGTCTAAAACACAATATGAGTTCGGGTCACAAGAGAGCTAAAATCACTTTGAAGGATTGCGAGGTCCGCTGTCTAATCTGCGACAAAGACATGAAAGTGAGCGAGATAAGTGAACATAATCAGACACATATATCGGCAAACTTGAAACCGAGAAATCTTTACACTTGTGTCGAGTGTGGTGAGAAATTCCAGAGCTGTACTTCTTTAGCTACCCACATAAAAATTGTGCATAGACTGAAACAACCCGGGGCCACTCCGGACAAGGATGATTCTATTAATTTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAACCCCTGGACGACAATGTCCAGAGTTACAACGACTCTACAACGGGTCCGTCTAAATCCGAAGCAACACCGTTAGTAGATCTGAACGGATTCACATGTCCCATTTGCAACAAGAAAATGGGCACGCTTATATCACTCAAACGACACGTAAACTGGCACTCGAATGTCGGCAATAATTTAGAGAAGGCAATGGAATGTTTTGTCTGCAATGAGAAGTTCAAATTTAAAAGCCACTATCGGCTTCATATGCGAGGCCACTACACAGATACTAATCTGGATCCTAAACTTTTGACGTGCACGATCTGCAACCGACGCAGCAAACACCTGCGAGCTGCACAAGCCCACATGAACTTCCACAAGCAGACTCGTTTCAAGAACAAGGACTACGAGTGTTCCATTTGTGGTCGCGTGTTTCAATATAGACGCGTCTACCTCTCGCATATGGCCATACACTTCAAACGAGGGGAGAGCGTCACCAACACCATAGTGGGCGTTCCCAACACCCAGGCTCAGGCTCTTGCCGACGCCCAGGGCAACACCGAAGGAAGCCTCGTCTGCAAACTCTGCGGCAAGGTCTGCGACTCCGAGGTCTCCCTCAAACATCACACAACCTGGCACAGCTCCAAGACTATGCTCTATGGAGCGCGCCACGAATGCCCACTGTGTCACCTCGTATTCACAAACAAGAGGCGGCGGGAGTTGCACATGAGAACCCATTTTGAAGATGACAATGGTCCGTACAAATGTAACATTTGCGGCAAGGGCTACATTGAAGAGGGCTATTTTAATCGGCACGTGAAGGGACACAACTTCGATAATCAATCGCATCAGAAACGCATTGATAATTTGAGAAAGCACAAGGTGAAATGTCCGATATGCGCCAGATACTATCCAGACTTGGTGAAGCTGATTCGTCACCTGCGTCGAACTCATCCGCAGAGTAAGATGATCAAGGAGGACCCTGACGCACCGCCGCCGGTCTATTACTCGTGCCAATTGTGTGCCAAAGTGTTTTTGAACGAGCAGCGGTTGAAAAATCACGAGGAGCGCCATCAACGCAAACCCAAGTGGTACAAGTGTAAGTTTTGCTCTATAAACTCGTTTTCACTTAAAGGCCACAGGATTCATATAAAGGCTCACATGAATAAAAAGTTTACGGACGATCCATTAGATTGTCCGCAGTGCGACGAGAAGTTCTATAAAGGTTATCATCTGCACTACCATTTGCGCGATGTCCACGGTATCTTGGAGACTTGGATCGATGAGGAGGCCGAAGAGAAGGTCTACGGTCCGTTGCAAGAATTCCAGTGTTCGGTCTGTTTCAAAATACTAGCTAACAAGGGCAACTTCGAGCGGCATATAGACTACCATAACACCCTCCGTTGTAATTACTGCTTCGAGTATTTCACCACTCAGAAATTTCTGGACGGTCATTTGGTGTTTAGCTGTGAAAAGCGGAAACTGATTGGAGATACGGAGGTGCATTTGAGGAAAATCAAATGTGACATATGCTATAAGGCATTCCACTTGCAAGTGAAGTTGGATTGCCACTTGCGTGCTCGTCACGACATAACAGTACAGCGGGAGGCTTCCGAGGGAAAGAAGGAATTCGTTTGCGATTTTTGCTTTAGGGTTTTCGAGAATGAAGATTCACTTGTATCACACAAATTGTACCACCGCACGATCGGATACTTTGGTTGCATTTATTGCAATAGAAAATTCAACACAATAACGGTCTACAATAAACACAAGAATCACCACTTCTCCCAGCTGAATGTGGACAAGCCCAACAAGTGTGAGCACTGTGAGAAAACATTTGTACCCTTCCGAGATATGATATATCATATGAGGGACGAGCACGGCGATGACAAGGAATGGATTATAATGCCCAAGGAATCCATTGAAGAAAAATGCAATATTTGCAACAAGGTCTTCCTAAATCTGCACAGACATCTGGAATACCACGAGGAAAATAGATGCAAGAAGTGCGGCGAGTATTTCTTTTCGATGTCAGATTATGACAACCATCTCTGCGCGATCGAGAGCGACGATGAAGTGGGCAATTTGGAGTTAAGTTCGAAACCGGCGTACGAGGAGTGTCGCTTCTGTTTCAAGCCGATCACTAAGAAAGACTCCAAATTGAAGCACGACAAGATTCACAGGGGCTCCGGTGCGATATCTTGCCGGTTCTGTCCTCTGAAATTCAAAACCATCGACGCTTTCAACATACATGCTTTCACGCATCGAAGTCGCAAATACAAGAAGAAGCCGCTCAAGTGTCGCGATTGCGGCGAGAAGTTTATTCAGTACGGACCTTTTATGAAACATCTCAAGTCTGTGCATAAGTTAACGCAGAAGATGCACTATCGAGCGACCGTAATTCCGGACAAGTGCATAGTGTGCGGTGACGATTTCCCCAACTTGCACAATCATTACAGGGCTCACTTGCAGAATCAGTGTCAGCAATGTCACAAATATTTCACTTCTCACAAAGTATTTAGTCATCATGAATGCGATAAGGAGGATTTGGATCCGTCGAAAGTGTTTGTTTGCAATGAAAACTTGAATGAACTTATCAAAACGTATGTTCCGAGAGACAGAGATGAGGCAGAACAAAGATATTATGGCTTGAACGACGAAGACGATGCTGCAGACGCCCAAGATAATACGAGTCAGTATTCAGCCGAAAGCGAGTTTATAGCACTTTTCGAACATCCCGTTATATCTGGAGTACAATCGCTTTTTAAATCGGAAATCGAGAAACTCAGCACAGATGATAGTCAGGATTGTAGTGATGTTCGAAACGGAGATGAGGCTGTTGTTGAAAATAATGATAATAAAACTTTTGCAAAACAAAATGGCAAAGACAAGGACGATGGCAGCGACTGTGACGTCATAGTATTAGATGAAGATTCAGTGGGATTTGACTGCACCTCTAACGTTATTACGATAGATTGA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTTDNDLQLSEMVMECTRVKIFDGDGLPDKVCSECIQKLSSAYIFKQQCERADLELRRNYVPPPGFTPPPPNRQSSDSAFSNQTDISYQNKPSSSTEGKAFPATRKRSHESIDNASSSSQSHDYNPSGSSKKVKKPKPIAQPQYNSDTDFDDNSGSVHSAEEESDSQRKLEEFPCPVCGKCFATKHSMSQHSKSHSRKSLTKLGENAVVNIPKSNVEDAKDVEDRLTCEKCGKNFKLKIMLKRHYDKCENTLKTQKELLITLEPVDAVINTFQCEICTAKFKTEDKFRIHMKAIHSMKSEKLDAAETPTDVSMPCIFCKEQFNDYYLYTSHFNSCSKRKDTDEFECPLCQRMLSRRNTFFTHIRNCHFETRPAKPQDKGGSDNFVCRICNKKLSNQNQLIEHLAAHMSNMSGELDESGVSSLNDQIETPNSDSLLDCSYCGKQFKGKKWLMKHLTAKHNVSQLELPSTAVNKSLPKVIYKDDESDSSHDETEDNTCDICEKQFSYRRTFLQHKRLKHNMSSGHKRAKITLKDCEVRCLICDKDMKVSEISEHNQTHISANLKPRNLYTCVECGEKFQSCTSLATHIKIVHRLKQPGATPDKDDSINLADFCEVVVTKAEPLDDNVQSYNDSTTGPSKSEATPLVDLNGFTCPICNKKMGTLISLKRHVNWHSNVGNNLEKAMECFVCNEKFKFKSHYRLHMRGHYTDTNLDPKLLTCTICNRRSKHLRAAQAHMNFHKQTRFKNKDYECSICGRVFQYRRVYLSHMAIHFKRGESVTNTIVGVPNTQAQALADAQGNTEGSLVCKLCGKVCDSEVSLKHHTTWHSSKTMLYGARHECPLCHLVFTNKRRRELHMRTHFEDDNGPYKCNICGKGYIEEGYFNRHVKGHNFDNQSHQKRIDNLRKHKVKCPICARYYPDLVKLIRHLRRTHPQSKMIKEDPDAPPPVYYSCQLCAKVFLNEQRLKNHEERHQRKPKWYKCKFCSINSFSLKGHRIHIKAHMNKKFTDDPLDCPQCDEKFYKGYHLHYHLRDVHGILETWIDEEAEEKVYGPLQEFQCSVCFKILANKGNFERHIDYHNTLRCNYCFEYFTTQKFLDGHLVFSCEKRKLIGDTEVHLRKIKCDICYKAFHLQVKLDCHLRARHDITVQREASEGKKEFVCDFCFRVFENEDSLVSHKLYHRTIGYFGCIYCNRKFNTITVYNKHKNHHFSQLNVDKPNKCEHCEKTFVPFRDMIYHMRDEHGDDKEWIIMPKESIEEKCNICNKVFLNLHRHLEYHEENRCKKCGEYFFSMSDYDNHLCAIESDDEVGNLELSSKPAYEECRFCFKPITKKDSKLKHDKIHRGSGAISCRFCPLKFKTIDAFNIHAFTHRSRKYKKKPLKCRDCGEKFIQYGPFMKHLKSVHKLTQKMHYRATVIPDKCIVCGDDFPNLHNHYRAHLQNQCQQCHKYFTSHKVFSHHECDKEDLDPSKVFVCNENLNELIKTYVPRDRDEAEQRYYGLNDEDDAADAQDNTSQYSAESEFIALFEHPVISGVQSLFKSEIEKLSTDDSQDCSDVRNGDEAVVENNDNKTFAKQNGKDKDDGSDCDVIVLDEDSVGFDCTSNVITID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386959;
90% Identity: iTF_01386959;
80% Identity: -